Wall clock time and date at job start Sat Apr 11 2020 07:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47050 * 239.99222 * 3 2 1 5 5 H 1.48498 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47067 * 119.99671 * 3 2 1 7 7 C 1.37879 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46940 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00442 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99812 * 179.97438 * 11 10 9 14 14 C 1.46839 * 120.38048 * 359.73476 * 13 11 10 15 15 C 1.52871 * 109.07607 * 236.84939 * 14 13 11 16 16 C 1.53180 * 108.82779 * 308.91356 * 15 14 13 17 17 C 1.52853 * 117.65943 * 269.84942 * 16 15 14 18 18 C 1.52812 * 117.71613 * 200.98611 * 16 15 14 19 19 H 1.09000 * 117.50073 * 0.13988 * 18 16 15 20 20 C 1.50705 * 117.49955 * 215.10107 * 18 16 15 21 21 O 1.21306 * 119.99968 * 263.94537 * 20 18 16 22 22 N 1.34775 * 119.99745 * 83.95534 * 20 18 16 23 23 C 1.40764 * 119.99512 * 179.97438 * 22 20 18 24 24 C 1.40251 * 126.08513 * 0.02562 * 23 22 20 25 25 N 1.30822 * 108.34036 * 179.97438 * 24 23 22 26 26 N 1.40068 * 108.36744 * 0.02562 * 25 24 23 27 27 H 0.97002 * 126.05414 * 180.02562 * 26 25 24 28 28 C 1.35760 * 126.07838 * 179.71419 * 23 22 20 29 29 C 1.53189 * 115.07317 * 55.31545 * 16 15 14 30 30 C 1.46845 * 120.38203 * 180.02562 * 13 11 10 31 31 H 0.96998 * 119.99956 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47009 * 59.99045 * 9 7 2 33 33 H 1.09007 * 109.46883 * 299.99820 * 9 7 2 34 34 H 1.09000 * 109.46886 * 59.99998 * 10 9 7 35 35 H 1.08997 * 109.46805 * 300.00016 * 10 9 7 36 36 H 1.08999 * 109.58232 * 356.68507 * 14 13 11 37 37 H 1.09002 * 109.58059 * 117.09102 * 14 13 11 38 38 H 1.08999 * 109.66735 * 189.04341 * 15 14 13 39 39 H 1.08996 * 109.44676 * 68.65561 * 15 14 13 40 40 H 1.09000 * 117.49972 * 359.75456 * 17 16 15 41 41 H 1.08995 * 117.50273 * 144.78313 * 17 16 15 42 42 H 0.96996 * 120.00333 * 359.97438 * 22 20 18 43 43 H 1.08004 * 125.82957 * 359.96800 * 24 23 22 44 44 H 1.08001 * 126.21480 * 0.02740 * 28 23 22 45 45 H 1.09003 * 109.58602 * 184.77080 * 29 16 15 46 46 H 1.09001 * 109.58859 * 64.33579 * 29 16 15 47 47 H 1.08993 * 109.58105 * 242.91434 * 30 13 11 48 48 H 1.09001 * 109.57844 * 3.31468 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1343 0.0008 14 6 3.6339 -6.1441 -0.0062 15 6 4.1226 -6.9404 -1.2162 16 6 3.4143 -8.2985 -1.2331 17 6 4.0836 -9.4570 -0.4940 18 6 4.0676 -9.4310 -2.0241 19 1 5.0062 -9.2128 -2.5336 20 6 3.1568 -10.4043 -2.7272 21 8 2.8650 -11.4547 -2.1952 22 7 2.6666 -10.1077 -3.9471 23 6 1.8163 -11.0171 -4.6040 24 6 1.3977 -12.2612 -4.1100 25 7 0.6164 -12.8160 -5.0006 26 7 0.5080 -11.9480 -6.0946 27 1 -0.0098 -12.1058 -6.8995 28 6 1.2509 -10.8432 -5.8259 29 6 1.8839 -8.2328 -1.2148 30 6 1.4399 -7.4109 0.0008 31 1 -0.4850 0.8400 -0.0004 32 1 0.6246 -2.5570 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 2.8719 -3.6043 0.8905 35 1 2.8719 -3.6043 -0.8894 36 1 4.0058 -5.1215 -0.0698 37 1 4.0005 -6.6121 0.9075 38 1 5.1998 -7.0909 -1.1456 39 1 3.8869 -6.3939 -2.1294 40 1 5.0326 -9.2558 0.0029 41 1 3.4353 -10.1777 0.0043 42 1 2.8997 -9.2677 -4.3724 43 1 1.6734 -12.6883 -3.1571 44 1 1.3722 -9.9839 -6.4687 45 1 1.4757 -9.2410 -1.1432 46 1 1.5277 -7.7560 -2.1280 47 1 1.6661 -7.9597 0.9149 48 1 0.3680 -7.2217 -0.0582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271767704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:16 Heat of formation + Delta-G solvation = -2.195487 kcal Electronic energy + Delta-G solvation = -29890.226255 eV Core-core repulsion = 25753.169839 eV Total energy + Delta-G solvation = -4137.056416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37582 -41.50683 -40.61650 -38.92385 -36.28027 -35.72370 -35.57856 -33.29857 -32.30763 -32.03834 -30.97008 -30.00422 -27.75657 -25.44451 -24.97843 -24.47273 -23.40884 -23.11755 -21.81975 -21.20274 -20.63729 -19.25784 -19.04878 -18.71937 -18.01638 -17.57109 -16.76360 -16.73687 -16.58932 -16.47295 -16.33254 -15.82787 -15.44024 -15.25523 -15.10978 -14.81545 -14.69445 -14.54391 -14.17161 -14.06597 -13.84873 -13.74054 -13.27375 -13.15046 -12.94086 -12.74995 -12.61200 -12.47632 -12.14029 -11.95312 -11.93893 -11.88532 -11.76227 -11.47885 -11.29033 -11.20917 -10.95102 -10.72251 -10.66580 -10.57995 -10.53323 -9.53940 -8.81752 -8.15114 -6.29320 0.76630 1.29142 1.44469 1.49022 1.56629 1.72565 1.76642 2.04283 2.11192 2.27962 2.45876 2.74001 3.17841 3.53747 3.63179 3.77073 3.83992 3.90340 3.96049 4.04866 4.12612 4.15995 4.33369 4.46716 4.49297 4.53612 4.56768 4.58969 4.65310 4.68522 4.77747 4.85033 4.96001 4.99774 5.01972 5.09261 5.12344 5.18891 5.27012 5.37324 5.51686 5.65531 5.69572 5.77448 5.88099 6.20025 6.37805 6.42895 6.47186 6.65763 6.89553 7.22076 7.31661 7.41158 8.97403 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002044 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.378719 B =13692.234197 C =14457.109535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.974 3.026 4 H -0.260 1.260 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.114 4.114 11 C 0.508 3.492 12 O -0.596 6.596 13 N -0.608 5.608 14 C 0.099 3.901 15 C -0.090 4.090 16 C -0.095 4.095 17 C -0.132 4.132 18 C -0.170 4.170 19 H 0.165 0.835 20 C 0.541 3.459 21 O -0.566 6.566 22 N -0.628 5.628 23 C -0.026 4.026 24 C 0.033 3.967 25 N -0.320 5.320 26 N -0.464 5.464 27 H 0.458 0.542 28 C 0.048 3.952 29 C -0.089 4.089 30 C 0.114 3.886 31 H 0.262 0.738 32 H -0.020 1.020 33 H -0.022 1.022 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.427 0.573 43 H 0.188 0.812 44 H 0.225 0.775 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.731 -22.438 -11.247 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.153 4.153 11 C 0.299 3.701 12 O -0.476 6.476 13 N -0.342 5.342 14 C -0.022 4.022 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.169 4.169 18 C -0.190 4.190 19 H 0.182 0.818 20 C 0.330 3.670 21 O -0.444 6.444 22 N -0.273 5.273 23 C -0.130 4.130 24 C -0.154 4.154 25 N -0.145 5.145 26 N -0.177 5.177 27 H 0.306 0.694 28 C -0.102 4.102 29 C -0.128 4.128 30 C -0.009 4.009 31 H 0.070 0.930 32 H -0.002 1.002 33 H -0.004 1.004 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.265 0.735 43 H 0.204 0.796 44 H 0.241 0.759 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.086 -24.079 -11.115 29.573 hybrid contribution -0.372 1.651 -0.304 1.720 sum 12.714 -22.428 -11.419 28.197 Atomic orbital electron populations 1.70184 1.08402 1.27802 1.51565 1.26168 0.95701 1.04041 0.94729 0.85369 0.78016 0.77252 0.79574 1.18435 1.21670 1.18652 1.21691 0.94079 0.91425 1.50623 0.90258 1.18694 0.93740 0.92681 0.94428 1.21625 0.99183 0.89839 1.04658 1.21466 0.87612 0.86856 0.74192 1.90642 1.16965 1.88058 1.51941 1.48178 1.08319 1.04559 1.73103 1.21978 0.77080 1.03122 1.00064 1.21535 1.01148 0.91767 0.98360 1.21434 0.93317 0.91361 1.03487 1.23197 1.03655 0.98785 0.91272 1.22372 1.01389 0.99139 0.96111 0.81799 1.20234 0.79843 0.86648 0.80295 1.90591 1.60290 1.27138 1.66414 1.42714 1.46059 1.20801 1.17773 1.18023 1.04906 0.94278 0.95824 1.24410 0.96670 0.94212 1.00115 1.77309 1.22505 1.17850 0.96798 1.46189 1.40387 1.13612 1.17507 0.69420 1.22694 0.96274 0.94390 0.96884 1.21413 0.94056 0.99333 0.97958 1.21449 0.96784 0.83762 0.98875 0.92957 1.00175 1.00389 0.87844 0.87465 0.88122 0.89253 0.86469 0.90644 0.84943 0.89506 0.73494 0.79578 0.75862 0.91597 0.91837 0.90240 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 13.29 21.45 0.28 -59.14 16 2 C -0.01 -0.53 5.46 84.65 0.46 -0.06 16 3 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.86 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.33 4.26 29.85 0.13 2.46 16 10 C -0.11 -4.40 3.97 29.85 0.12 -4.28 16 11 C 0.51 19.61 7.69 87.66 0.67 20.28 16 12 O -0.60 -29.75 15.36 -3.04 -0.05 -29.80 16 13 N -0.61 -16.24 2.93 -819.74 -2.40 -18.64 16 14 C 0.10 1.60 6.32 86.27 0.55 2.14 16 15 C -0.09 -0.94 5.81 30.61 0.18 -0.76 16 16 C -0.10 -1.20 1.94 -52.17 -0.10 -1.30 16 17 C -0.13 -1.52 9.45 30.56 0.29 -1.23 16 18 C -0.17 -1.82 5.90 -11.59 -0.07 -1.88 16 19 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 20 C 0.54 9.27 6.06 87.66 0.53 9.80 16 21 O -0.57 -14.13 13.77 -3.11 -0.04 -14.18 16 22 N -0.63 -8.44 5.47 -304.04 -1.66 -10.10 16 23 C -0.03 -0.44 6.90 37.62 0.26 -0.18 16 24 C 0.03 0.75 10.84 85.33 0.92 1.68 16 25 N -0.32 -7.10 12.69 -56.78 -0.72 -7.82 16 26 N -0.46 -6.11 7.40 -56.81 -0.42 -6.53 16 27 H 0.46 2.77 8.96 -213.34 -1.91 0.86 16 28 C 0.05 0.51 12.05 83.50 1.01 1.52 16 29 C -0.09 -1.74 5.23 30.76 0.16 -1.58 16 30 C 0.11 2.87 6.44 86.42 0.56 3.42 16 31 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 32 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 33 H -0.02 -1.41 8.10 -2.38 -0.02 -1.43 16 34 H 0.10 3.50 7.88 -2.39 -0.02 3.48 16 35 H 0.11 3.53 7.73 -2.39 -0.02 3.51 16 36 H 0.10 1.58 5.86 -2.39 -0.01 1.56 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 0.47 8.10 -2.39 -0.02 0.45 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.40 7.93 -2.39 -0.02 1.38 16 42 H 0.43 2.92 8.83 -92.71 -0.82 2.10 16 43 H 0.19 4.88 5.92 -2.91 -0.02 4.86 16 44 H 0.22 0.27 8.06 -2.91 -0.02 0.24 16 45 H 0.07 1.40 7.36 -2.39 -0.02 1.39 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.06 1.92 6.96 -2.39 -0.02 1.91 16 Total: -1.00 -90.13 393.89 1.19 -88.94 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -1.72 Total: 11.68 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.90 Total: 0.15 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.92 Total: -102.23 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.09 Total: -43.98 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -90.13 1.19 -88.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271767704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.747 kcal (2) G-P(sol) polarization free energy of solvation -90.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds