Wall clock time and date at job start Sat Apr 11 2020 07:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48505 * 109.46880 * 239.99995 * 3 2 1 5 5 H 1.48505 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47185 * 120.00577 * 3 2 1 7 7 C 1.38945 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99661 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00043 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99764 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00112 * 180.28100 * 10 9 7 13 13 N 1.46904 * 109.46942 * 179.72821 * 12 10 9 14 14 C 1.48793 * 110.99636 * 288.56697 * 13 12 10 15 15 C 1.55469 * 106.93717 * 233.48240 * 14 13 12 16 16 C 1.53402 * 101.74031 * 337.30756 * 15 14 13 17 17 H 1.09004 * 111.70042 * 281.94121 * 16 15 14 18 18 C 1.45470 * 110.99597 * 169.99915 * 13 12 10 19 19 H 1.08991 * 108.75576 * 36.84474 * 18 13 12 20 20 C 1.51100 * 119.09664 * 271.51940 * 18 13 12 21 21 C 1.53872 * 107.32835 * 176.24104 * 20 18 13 22 22 C 1.52716 * 111.52876 * 56.93851 * 21 20 18 23 23 N 1.46073 * 115.92302 * 152.56309 * 16 15 14 24 24 C 1.34775 * 122.71634 * 9.56992 * 23 16 15 25 25 O 1.21626 * 119.99871 * 353.70411 * 24 23 16 26 26 C 1.47268 * 119.99948 * 173.69998 * 24 23 16 27 27 C 1.46680 * 126.94132 * 332.51141 * 26 24 23 28 28 C 1.34492 * 106.33016 * 179.88654 * 27 26 24 29 29 N 1.36442 * 108.85311 * 0.37922 * 28 27 26 30 30 H 0.97006 * 124.84987 * 179.77297 * 29 28 27 31 31 C 1.34660 * 110.30321 * 359.74695 * 29 28 27 32 32 H 0.97005 * 119.99926 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00391 * 0.02562 * 9 7 2 34 34 H 1.09005 * 109.46680 * 299.72578 * 12 10 9 35 35 H 1.08989 * 109.47200 * 59.72290 * 12 10 9 36 36 H 1.09001 * 109.96755 * 352.85892 * 14 13 12 37 37 H 1.09002 * 109.96411 * 114.11540 * 14 13 12 38 38 H 1.09003 * 110.97252 * 219.19334 * 15 14 13 39 39 H 1.08999 * 110.97300 * 95.42391 * 15 14 13 40 40 H 1.09000 * 109.88845 * 295.69925 * 20 18 13 41 41 H 1.09008 * 109.88186 * 56.78876 * 20 18 13 42 42 H 1.08997 * 109.06973 * 177.47020 * 21 20 18 43 43 H 1.08999 * 109.06905 * 296.41572 * 21 20 18 44 44 H 1.08996 * 109.15570 * 71.89378 * 22 21 20 45 45 H 1.08999 * 109.15827 * 191.07198 * 22 21 20 46 46 H 1.07999 * 126.83554 * 0.02562 * 27 26 24 47 47 H 1.08006 * 125.57099 * 180.16044 * 28 27 26 48 48 H 1.07996 * 125.80303 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0080 13 7 2.1983 -5.9795 -0.0145 14 6 2.8801 -6.0903 -1.3323 15 6 2.6866 -7.5535 -1.8208 16 6 2.4222 -8.2905 -0.5016 17 1 3.3437 -8.4668 0.0533 18 6 1.5206 -7.2460 0.2151 19 1 0.5527 -7.2214 -0.2854 20 6 1.3227 -7.7269 1.6339 21 6 0.5035 -9.0277 1.5668 22 6 1.1900 -10.0781 0.6964 23 7 1.6120 -9.5021 -0.5983 24 6 1.2769 -10.0622 -1.7775 25 8 1.5529 -9.4978 -2.8190 26 6 0.5767 -11.3574 -1.8049 27 6 0.6466 -12.4189 -0.7950 28 6 -0.1514 -13.4095 -1.2317 29 7 -0.6950 -13.0427 -2.4282 30 1 -1.3043 -13.5876 -2.9506 31 6 -0.2655 -11.8159 -2.7801 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3906 -0.0005 34 1 0.6176 -4.9253 0.8822 35 1 0.6164 -4.9159 -0.8977 36 1 2.4301 -5.3978 -2.0437 37 1 3.9423 -5.8724 -1.2213 38 1 3.5905 -7.9270 -2.3020 39 1 1.8296 -7.6314 -2.4898 40 1 2.2897 -7.9212 2.0978 41 1 0.7795 -6.9758 2.2075 42 1 0.3821 -9.4244 2.5747 43 1 -0.4799 -8.8082 1.1510 44 1 2.0660 -10.4599 1.2206 45 1 0.4972 -10.8995 0.5138 46 1 1.2224 -12.4065 0.1186 47 1 -0.3297 -14.3441 -0.7207 48 1 -0.5397 -11.2844 -3.6793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272025209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:28 Heat of formation + Delta-G solvation = 9.428325 kcal Electronic energy + Delta-G solvation = -30815.573905 eV Core-core repulsion = 26679.021535 eV Total energy + Delta-G solvation = -4136.552370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57391 -40.54196 -38.53691 -37.58215 -35.98374 -33.79914 -32.98181 -31.99310 -31.14554 -30.45618 -29.48016 -28.89051 -26.49727 -25.36993 -24.16405 -22.78990 -22.09776 -21.39298 -20.77534 -19.90661 -19.38584 -19.03908 -18.10561 -17.69332 -16.21069 -16.00656 -15.92073 -15.42922 -15.08207 -14.92536 -14.52190 -14.45406 -14.24152 -14.06226 -13.99301 -13.77082 -13.62149 -13.38522 -13.21687 -13.03730 -12.60515 -12.41216 -12.26807 -12.03337 -11.75030 -11.45864 -11.39850 -11.08805 -11.00611 -10.93602 -10.83665 -10.54387 -10.48685 -10.38410 -10.13643 -9.45559 -9.40102 -9.09043 -8.76880 -8.54460 -8.34379 -7.87764 -7.76396 -6.33596 -3.73974 1.58829 2.06262 2.72065 3.03045 3.25808 3.30441 3.30491 3.35387 4.00443 4.05483 4.26413 4.43040 4.60638 4.70659 4.78444 4.81633 4.89796 4.97216 5.08036 5.11883 5.22214 5.26942 5.34314 5.41481 5.46877 5.50782 5.56709 5.62481 5.64139 5.80512 5.81223 5.86518 5.93751 6.02271 6.11372 6.26570 6.30160 6.30780 6.34047 6.41280 6.51187 6.58050 6.76023 7.04509 7.31707 7.41227 7.50099 7.62606 8.14949 8.25421 8.71489 9.26852 9.64059 10.16861 10.84410 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002166 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.473131 B =12922.690944 C =13100.608182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.296 4.296 8 H 0.102 0.898 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.043 3.957 13 N -0.493 5.493 14 C 0.053 3.947 15 C -0.135 4.135 16 C 0.137 3.863 17 H 0.092 0.908 18 C 0.058 3.942 19 H 0.042 0.958 20 C -0.103 4.103 21 C -0.132 4.132 22 C 0.096 3.904 23 N -0.599 5.599 24 C 0.596 3.404 25 O -0.542 6.542 26 C -0.228 4.228 27 C -0.175 4.175 28 C -0.017 4.017 29 N -0.555 5.555 30 H 0.418 0.582 31 C 0.070 3.930 32 H 0.271 0.729 33 H 0.391 0.609 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.150 0.850 47 H 0.169 0.831 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -29.660 -0.221 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.425 4.425 8 H 0.120 0.880 9 N -0.206 5.206 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.089 4.089 13 N -0.217 5.217 14 C -0.075 4.075 15 C -0.173 4.173 16 C 0.033 3.967 17 H 0.110 0.890 18 C -0.053 4.053 19 H 0.060 0.940 20 C -0.141 4.141 21 C -0.170 4.170 22 C -0.026 4.026 23 N -0.331 5.331 24 C 0.386 3.614 25 O -0.421 6.421 26 C -0.238 4.238 27 C -0.199 4.199 28 C -0.145 4.145 29 N -0.149 5.149 30 H 0.254 0.746 31 C -0.066 4.066 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.168 0.832 47 H 0.186 0.814 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.312 -29.182 -0.443 29.502 hybrid contribution -1.192 0.526 -0.649 1.455 sum -5.503 -28.656 -1.092 29.201 Atomic orbital electron populations 1.69611 1.05898 1.28088 1.51026 1.25243 0.95630 0.99635 0.97577 0.85929 0.78733 0.80575 0.79028 1.19973 1.21063 1.19939 1.19638 0.93297 0.82258 1.47351 0.88029 1.41858 1.09118 1.04565 1.65031 1.19740 0.88426 0.84462 0.84152 1.90514 1.13629 1.87010 1.54620 1.22059 0.93919 0.91587 1.01336 1.62864 1.27094 1.00710 1.30987 1.23283 1.01018 0.94762 0.88443 1.23021 1.04147 0.94093 0.96049 1.22088 0.93529 0.82998 0.98128 0.88982 1.22235 0.96522 0.89817 0.96678 0.93959 1.21246 1.00795 0.96082 0.96007 1.21943 0.99542 0.95633 0.99921 1.22167 1.00027 0.96920 0.83477 1.47774 1.52350 1.27242 1.05777 1.17360 0.77865 0.83475 0.82654 1.90757 1.55569 1.63397 1.32362 1.20405 1.07824 0.96805 0.98811 1.22204 1.03701 0.93732 1.00274 1.21826 1.02096 1.01418 0.89170 1.41647 1.38813 1.15444 1.19032 0.74593 1.21811 0.98679 0.86305 0.99834 0.91950 0.77586 0.89669 0.93358 0.92614 0.89742 0.90789 0.88401 0.90856 0.91226 0.90303 0.91749 0.91617 0.88067 0.83219 0.81389 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 13.05 55.50 0.72 -24.53 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.57 -14.96 5.29 -10.96 -0.06 -15.02 16 10 C 0.45 11.05 7.53 -10.98 -0.08 10.97 16 11 O -0.57 -16.12 15.21 5.55 0.08 -16.04 16 12 C 0.04 0.82 5.03 -4.97 -0.03 0.80 16 13 N -0.49 -8.88 4.83 -225.52 -1.09 -9.97 16 14 C 0.05 0.94 5.76 -1.46 -0.01 0.93 16 15 C -0.13 -2.10 5.15 -25.21 -0.13 -2.23 16 16 C 0.14 1.88 3.32 -66.63 -0.22 1.66 16 17 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 18 C 0.06 0.84 1.75 -68.12 -0.12 0.72 16 19 H 0.04 0.65 7.73 -51.93 -0.40 0.25 16 20 C -0.10 -1.21 5.97 -27.23 -0.16 -1.37 16 21 C -0.13 -1.15 5.92 -26.42 -0.16 -1.31 16 22 C 0.10 0.83 5.28 -3.44 -0.02 0.81 16 23 N -0.60 -7.16 2.91 -165.07 -0.48 -7.64 16 24 C 0.60 7.91 7.67 -12.59 -0.10 7.81 16 25 O -0.54 -8.90 13.76 5.25 0.07 -8.82 16 26 C -0.23 -2.33 5.74 -103.35 -0.59 -2.93 16 27 C -0.18 -1.30 8.71 -37.50 -0.33 -1.62 16 28 C -0.02 -0.09 11.89 -16.82 -0.20 -0.29 16 29 N -0.55 -2.76 5.90 -12.85 -0.08 -2.84 16 30 H 0.42 0.68 8.96 -40.82 -0.37 0.31 16 31 C 0.07 0.56 11.79 -16.84 -0.20 0.36 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.39 9.87 7.90 -40.82 -0.32 9.55 16 34 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 35 H 0.05 0.89 7.89 -51.94 -0.41 0.48 16 36 H 0.06 1.06 7.42 -51.93 -0.39 0.68 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.67 5.96 -51.93 -0.31 1.36 16 40 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.74 4.24 -51.93 -0.22 0.52 16 46 H 0.15 0.89 6.53 -52.49 -0.34 0.55 16 47 H 0.17 0.36 8.06 -52.48 -0.42 -0.06 16 48 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -35.79 379.86 -9.61 -45.40 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.91 Total: 10.98 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -2.58 Total: 6.14 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.98 Total: -60.00 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.16 Total: -24.86 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.79 -9.61 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272025209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.828 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds