Wall clock time and date at job start Sat Apr 11 2020 07:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48505 * 109.46880 * 239.99995 * 3 2 1 5 5 H 1.48505 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47185 * 120.00577 * 3 2 1 7 7 C 1.38945 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99661 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00043 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99764 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00112 * 180.28100 * 10 9 7 13 13 N 1.46904 * 109.46942 * 179.72821 * 12 10 9 14 14 C 1.48793 * 110.99636 * 288.56697 * 13 12 10 15 15 C 1.55469 * 106.93717 * 233.48240 * 14 13 12 16 16 C 1.53402 * 101.74031 * 337.30756 * 15 14 13 17 17 H 1.09004 * 111.70042 * 281.94121 * 16 15 14 18 18 C 1.45470 * 110.99597 * 169.99915 * 13 12 10 19 19 H 1.08991 * 108.75576 * 36.84474 * 18 13 12 20 20 C 1.51100 * 119.09664 * 271.51940 * 18 13 12 21 21 C 1.53872 * 107.32835 * 176.24104 * 20 18 13 22 22 C 1.52716 * 111.52876 * 56.93851 * 21 20 18 23 23 N 1.46073 * 115.92302 * 152.56309 * 16 15 14 24 24 C 1.34775 * 122.71634 * 9.56992 * 23 16 15 25 25 O 1.21626 * 119.99871 * 353.70411 * 24 23 16 26 26 C 1.47268 * 119.99948 * 173.69998 * 24 23 16 27 27 C 1.46680 * 126.94132 * 332.51141 * 26 24 23 28 28 C 1.34492 * 106.33016 * 179.88654 * 27 26 24 29 29 N 1.36442 * 108.85311 * 0.37922 * 28 27 26 30 30 H 0.97006 * 124.84987 * 179.77297 * 29 28 27 31 31 C 1.34660 * 110.30321 * 359.74695 * 29 28 27 32 32 H 0.97005 * 119.99926 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00391 * 0.02562 * 9 7 2 34 34 H 1.09005 * 109.46680 * 299.72578 * 12 10 9 35 35 H 1.08989 * 109.47200 * 59.72290 * 12 10 9 36 36 H 1.09001 * 109.96755 * 352.85892 * 14 13 12 37 37 H 1.09002 * 109.96411 * 114.11540 * 14 13 12 38 38 H 1.09003 * 110.97252 * 219.19334 * 15 14 13 39 39 H 1.08999 * 110.97300 * 95.42391 * 15 14 13 40 40 H 1.09000 * 109.88845 * 295.69925 * 20 18 13 41 41 H 1.09008 * 109.88186 * 56.78876 * 20 18 13 42 42 H 1.08997 * 109.06973 * 177.47020 * 21 20 18 43 43 H 1.08999 * 109.06905 * 296.41572 * 21 20 18 44 44 H 1.08996 * 109.15570 * 71.89378 * 22 21 20 45 45 H 1.08999 * 109.15827 * 191.07198 * 22 21 20 46 46 H 1.07999 * 126.83554 * 0.02562 * 27 26 24 47 47 H 1.08006 * 125.57099 * 180.16044 * 28 27 26 48 48 H 1.07996 * 125.80303 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0080 13 7 2.1983 -5.9795 -0.0145 14 6 2.8801 -6.0903 -1.3323 15 6 2.6866 -7.5535 -1.8208 16 6 2.4222 -8.2905 -0.5016 17 1 3.3437 -8.4668 0.0533 18 6 1.5206 -7.2460 0.2151 19 1 0.5527 -7.2214 -0.2854 20 6 1.3227 -7.7269 1.6339 21 6 0.5035 -9.0277 1.5668 22 6 1.1900 -10.0781 0.6964 23 7 1.6120 -9.5021 -0.5983 24 6 1.2769 -10.0622 -1.7775 25 8 1.5529 -9.4978 -2.8190 26 6 0.5767 -11.3574 -1.8049 27 6 0.6466 -12.4189 -0.7950 28 6 -0.1514 -13.4095 -1.2317 29 7 -0.6950 -13.0427 -2.4282 30 1 -1.3043 -13.5876 -2.9506 31 6 -0.2655 -11.8159 -2.7801 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3906 -0.0005 34 1 0.6176 -4.9253 0.8822 35 1 0.6164 -4.9159 -0.8977 36 1 2.4301 -5.3978 -2.0437 37 1 3.9423 -5.8724 -1.2213 38 1 3.5905 -7.9270 -2.3020 39 1 1.8296 -7.6314 -2.4898 40 1 2.2897 -7.9212 2.0978 41 1 0.7795 -6.9758 2.2075 42 1 0.3821 -9.4244 2.5747 43 1 -0.4799 -8.8082 1.1510 44 1 2.0660 -10.4599 1.2206 45 1 0.4972 -10.8995 0.5138 46 1 1.2224 -12.4065 0.1186 47 1 -0.3297 -14.3441 -0.7207 48 1 -0.5397 -11.2844 -3.6793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272025209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:27 Heat of formation + Delta-G solvation = -17.271103 kcal Electronic energy + Delta-G solvation = -30816.731679 eV Core-core repulsion = 26679.021535 eV Total energy + Delta-G solvation = -4137.710144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26211 -41.51166 -40.13505 -39.01835 -37.11927 -35.89774 -33.99906 -33.34446 -32.90469 -31.41409 -30.09785 -29.87737 -28.20615 -26.32392 -26.04126 -23.76655 -23.01677 -22.43784 -21.44390 -21.16753 -20.80617 -19.98561 -19.82424 -18.81730 -17.76090 -17.34635 -17.00533 -16.56933 -16.50351 -16.13678 -16.02771 -15.64255 -15.48609 -15.26124 -15.13311 -14.76255 -14.53047 -14.51434 -14.36364 -14.02683 -13.79049 -13.64561 -13.48447 -13.45790 -13.01450 -12.93292 -12.90648 -12.56154 -12.42976 -12.27139 -12.12630 -11.97215 -11.85933 -11.71928 -11.55940 -11.48923 -10.48493 -10.33869 -10.01329 -9.74712 -9.54462 -9.26726 -9.20163 -8.46170 -5.95129 0.86815 1.39615 1.40647 1.52183 1.60011 1.91320 2.04502 2.28844 2.45889 2.52613 2.75755 3.18384 3.22406 3.47062 3.66763 3.88983 4.03888 4.10439 4.12662 4.16731 4.20279 4.27282 4.29989 4.34702 4.38945 4.44507 4.47166 4.57434 4.60233 4.73813 4.84907 4.88690 4.95105 4.97822 5.05043 5.09426 5.16800 5.21277 5.26159 5.40358 5.42702 5.58836 5.81219 5.82523 5.97858 6.02848 6.13264 6.55442 6.60634 6.73346 7.12589 7.30501 7.55394 8.11553 8.71269 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002166 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.473131 B =12922.690944 C =13100.608182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.444 3.556 11 O -0.612 6.612 12 C 0.057 3.943 13 N -0.506 5.506 14 C 0.056 3.944 15 C -0.121 4.121 16 C 0.142 3.858 17 H 0.098 0.902 18 C 0.060 3.940 19 H 0.033 0.967 20 C -0.102 4.102 21 C -0.123 4.123 22 C 0.093 3.907 23 N -0.598 5.598 24 C 0.587 3.413 25 O -0.589 6.589 26 C -0.263 4.263 27 C -0.191 4.191 28 C 0.000 4.000 29 N -0.539 5.539 30 H 0.435 0.565 31 C 0.064 3.936 32 H 0.278 0.722 33 H 0.395 0.605 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.164 0.836 47 H 0.207 0.793 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -32.219 1.273 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.498 6.498 12 C -0.075 4.075 13 N -0.230 5.230 14 C -0.072 4.072 15 C -0.159 4.159 16 C 0.037 3.963 17 H 0.116 0.884 18 C -0.049 4.049 19 H 0.051 0.949 20 C -0.140 4.140 21 C -0.161 4.161 22 C -0.028 4.028 23 N -0.330 5.330 24 C 0.379 3.621 25 O -0.471 6.471 26 C -0.273 4.273 27 C -0.214 4.214 28 C -0.128 4.128 29 N -0.134 5.134 30 H 0.275 0.725 31 C -0.074 4.074 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.138 0.862 46 H 0.181 0.819 47 H 0.224 0.776 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.743 -31.795 1.077 32.328 hybrid contribution -0.788 1.244 -1.143 1.864 sum -6.531 -30.551 -0.065 31.241 Atomic orbital electron populations 1.69678 1.06849 1.29335 1.50423 1.26069 0.96594 1.02456 0.96322 0.84969 0.77739 0.76531 0.78962 1.19817 1.19372 1.19560 1.19625 0.92682 0.83930 1.49925 0.90312 1.41922 1.09235 1.04688 1.65473 1.20644 0.88284 0.85719 0.82256 1.90481 1.15543 1.87813 1.55932 1.21889 0.93575 0.89209 1.02829 1.62853 1.27479 1.01953 1.30748 1.23160 0.99765 0.95921 0.88377 1.22810 1.03420 0.92835 0.96884 1.21936 0.94019 0.83875 0.96457 0.88387 1.22347 0.95649 0.88087 0.98850 0.94939 1.21309 1.01571 0.97522 0.93620 1.21928 0.98449 0.94025 1.01741 1.22455 1.01330 0.97184 0.81806 1.47873 1.51745 1.26335 1.07002 1.17941 0.77512 0.84391 0.82226 1.90719 1.57574 1.64884 1.33914 1.20357 1.09392 0.96371 1.01186 1.22393 1.04999 0.93433 1.00585 1.22420 1.00065 1.01892 0.88453 1.41685 1.38248 1.14404 1.19110 0.72522 1.21880 0.98506 0.87419 0.99555 0.91304 0.77146 0.87368 0.92366 0.94709 0.91515 0.90862 0.89909 0.90522 0.91569 0.87091 0.92264 0.89661 0.86227 0.81863 0.77620 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 13.05 21.66 0.28 -51.08 16 2 C -0.01 -0.83 5.50 84.92 0.47 -0.36 16 3 Si 0.99 44.35 29.55 68.60 2.03 46.37 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.33 -19.62 9.68 84.04 0.81 -18.81 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.58 -31.24 5.29 -306.98 -1.62 -32.87 16 10 C 0.44 22.73 7.53 87.66 0.66 23.39 16 11 O -0.61 -35.87 15.21 -3.07 -0.05 -35.92 16 12 C 0.06 2.22 5.03 85.56 0.43 2.65 16 13 N -0.51 -18.70 4.83 -867.41 -4.19 -22.89 16 14 C 0.06 2.12 5.76 86.79 0.50 2.62 16 15 C -0.12 -3.98 5.15 31.58 0.16 -3.81 16 16 C 0.14 3.92 3.32 46.06 0.15 4.07 16 17 H 0.10 2.60 8.11 -2.38 -0.02 2.58 16 18 C 0.06 1.73 1.75 45.42 0.08 1.81 16 19 H 0.03 1.00 7.73 -2.39 -0.02 0.99 16 20 C -0.10 -2.22 5.97 30.27 0.18 -2.04 16 21 C -0.12 -1.79 5.92 30.79 0.18 -1.61 16 22 C 0.09 1.34 5.28 86.03 0.45 1.80 16 23 N -0.60 -13.86 2.91 -794.42 -2.31 -16.17 16 24 C 0.59 15.67 7.67 86.62 0.66 16.33 16 25 O -0.59 -20.25 13.76 -4.11 -0.06 -20.31 16 26 C -0.26 -5.08 5.74 -19.04 -0.11 -5.19 16 27 C -0.19 -2.27 8.71 23.62 0.21 -2.06 16 28 C 0.00 0.00 11.89 83.12 0.99 0.99 16 29 N -0.54 -3.78 5.90 -194.56 -1.15 -4.93 16 30 H 0.43 0.01 8.96 -92.70 -0.83 -0.83 16 31 C 0.06 0.96 11.79 83.91 0.99 1.95 16 32 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 33 H 0.39 20.42 7.90 -92.71 -0.73 19.69 16 34 H 0.11 3.75 8.07 -2.38 -0.02 3.74 16 35 H 0.06 2.19 7.89 -2.39 -0.02 2.17 16 36 H 0.03 1.43 7.42 -2.39 -0.02 1.41 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.08 3.02 5.96 -2.39 -0.01 3.01 16 40 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 41 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 45 H 0.12 1.36 4.24 -2.39 -0.01 1.35 16 46 H 0.16 1.36 6.53 -2.91 -0.02 1.34 16 47 H 0.21 -0.25 8.06 -2.91 -0.02 -0.28 16 48 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -81.15 379.86 -0.80 -81.95 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.55 Total: 34.11 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.82 Total: 21.73 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -8.99 Total: -127.94 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -0.10 Total: -56.23 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -81.15 -0.80 -81.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272025209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.678 kcal (2) G-P(sol) polarization free energy of solvation -81.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds