Wall clock time and date at job start Sat Apr 11 2020 07:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48502 * 109.46874 * 270.00116 * 3 2 1 5 5 H 1.48495 * 109.47110 * 30.00290 * 3 2 1 6 6 H 1.48496 * 109.46869 * 150.00277 * 3 2 1 7 7 C 1.37870 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00626 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.53008 * 109.47176 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.33967 * 122.78470 * 89.98031 * 11 10 9 13 13 O 1.21233 * 125.40634 * 359.97438 * 12 11 10 14 14 C 1.51449 * 109.17875 * 180.26123 * 12 11 10 15 15 C 1.53742 * 103.35747 * 359.62889 * 14 12 11 16 16 C 1.52524 * 110.49494 * 241.56875 * 15 14 12 17 17 C 1.53229 * 109.19576 * 181.45107 * 16 15 14 18 18 C 1.53056 * 109.20783 * 56.77769 * 17 16 15 19 19 N 1.46847 * 109.61182 * 300.36031 * 18 17 16 20 20 C 1.46906 * 110.99748 * 186.23269 * 19 18 17 21 21 C 1.50699 * 109.47084 * 293.95774 * 20 19 18 22 22 C 1.39865 * 125.89898 * 94.71444 * 21 20 19 23 23 C 1.35319 * 107.91854 * 179.86034 * 22 21 20 24 24 N 1.34948 * 107.74356 * 0.39361 * 23 22 21 25 25 H 0.97001 * 126.03351 * 179.74597 * 24 23 22 26 26 N 1.30837 * 125.89661 * 275.01961 * 21 20 19 27 27 C 1.46961 * 111.15455 * 62.17538 * 19 18 17 28 28 C 1.34057 * 122.78837 * 269.99835 * 11 10 9 29 29 O 1.21230 * 125.50114 * 0.02562 * 28 11 10 30 30 H 0.97002 * 119.99415 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46686 * 60.00145 * 9 7 2 32 32 H 1.08996 * 109.47391 * 299.99841 * 9 7 2 33 33 H 1.08999 * 109.46339 * 59.99976 * 10 9 7 34 34 H 1.08996 * 109.47018 * 300.00299 * 10 9 7 35 35 H 1.08999 * 110.63973 * 118.22312 * 14 12 11 36 36 H 1.08995 * 110.64030 * 241.28675 * 14 12 11 37 37 H 1.08992 * 109.51940 * 301.36849 * 16 15 14 38 38 H 1.09000 * 109.51896 * 61.48894 * 16 15 14 39 39 H 1.08995 * 109.51798 * 176.69866 * 17 16 15 40 40 H 1.09003 * 109.51922 * 296.86063 * 17 16 15 41 41 H 1.09002 * 109.44128 * 60.40161 * 18 17 16 42 42 H 1.08995 * 109.45053 * 180.34297 * 18 17 16 43 43 H 1.09002 * 109.46426 * 53.95542 * 20 19 18 44 44 H 1.08992 * 109.47165 * 173.95251 * 20 19 18 45 45 H 1.07998 * 126.04253 * 359.97438 * 22 21 20 46 46 H 1.07996 * 126.12905 * 180.14982 * 23 22 21 47 47 H 1.08994 * 109.45168 * 179.18659 * 27 19 18 48 48 H 1.08998 * 109.45241 * 59.25191 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.2128 -2.6358 1.1235 13 8 5.7633 -2.6346 2.2494 14 6 7.6845 -2.6295 0.7660 15 6 7.6766 -2.6365 -0.7713 16 6 8.3608 -3.8917 -1.3031 17 6 8.3685 -3.8507 -2.8349 18 6 9.0613 -2.5680 -3.3008 19 7 8.3424 -1.4005 -2.7750 20 6 8.8920 -0.1532 -3.3228 21 6 10.3006 0.0376 -2.8222 22 6 11.4677 -0.3451 -3.4913 23 6 12.5231 0.0000 -2.7181 24 7 12.0406 0.5727 -1.5954 25 1 12.5686 0.9154 -0.8574 26 7 10.6427 0.5849 -1.6842 27 6 8.3614 -1.3836 -1.3056 28 6 6.2115 -2.6371 -1.1297 29 8 5.7622 -2.6371 -2.2557 30 1 -0.4849 0.8401 0.0004 31 1 3.8751 -0.6804 0.8889 32 1 3.8746 -0.6801 -0.8911 33 1 3.6578 -3.1505 -0.8907 34 1 3.6585 -3.1502 0.8892 35 1 8.1682 -1.7296 1.1457 36 1 8.1769 -3.5229 1.1500 37 1 9.3858 -3.9315 -0.9348 38 1 7.8175 -4.7739 -0.9645 39 1 8.9078 -4.7163 -3.2196 40 1 7.3432 -3.8657 -3.2047 41 1 10.0881 -2.5569 -2.9352 42 1 9.0636 -2.5319 -4.3902 43 1 8.8973 -0.2059 -4.4116 44 1 8.2757 0.6869 -3.0028 45 1 11.5177 -0.8289 -4.4556 46 1 13.5648 -0.1583 -2.9549 47 1 7.8338 -0.5003 -0.9459 48 1 9.3935 -1.3571 -0.9562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272537409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:37 Heat of formation + Delta-G solvation = -8.472787 kcal Electronic energy + Delta-G solvation = -31784.727463 eV Core-core repulsion = 27647.398843 eV Total energy + Delta-G solvation = -4137.328620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26100 -42.10840 -40.06589 -39.02943 -36.97225 -36.30643 -35.08289 -33.72453 -32.10439 -32.01952 -30.83042 -28.99458 -27.86235 -27.18068 -25.27074 -24.29494 -23.33446 -22.93409 -22.05660 -21.61377 -20.65082 -19.57844 -19.17985 -18.91012 -17.83696 -17.54226 -17.40438 -16.62501 -16.41377 -16.15753 -15.89793 -15.81084 -15.31928 -15.18479 -15.08918 -14.99334 -14.80263 -14.62241 -14.40226 -14.32387 -13.95016 -13.65531 -13.59114 -13.43940 -13.32890 -13.03850 -12.95940 -12.69524 -12.42197 -12.15101 -11.97189 -11.92549 -11.73777 -11.57052 -11.54482 -11.45491 -11.17074 -10.86675 -10.76020 -10.61867 -10.38030 -9.59502 -9.25852 -8.38723 -6.43961 0.56238 1.01722 1.27245 1.28300 1.39951 1.58291 1.79979 1.84230 2.09689 2.27219 2.85337 2.95506 3.12598 3.23929 3.45674 3.57199 3.77428 3.95969 3.99138 4.10381 4.19870 4.25820 4.29387 4.35697 4.41514 4.51825 4.53193 4.59790 4.60744 4.66134 4.73392 4.78824 4.85990 4.86341 4.93148 4.95567 5.06410 5.12673 5.15144 5.16289 5.23426 5.48619 5.51751 5.71283 5.94869 6.05393 6.13111 6.19158 6.42250 6.53257 6.60429 6.78638 6.86237 7.20575 8.77545 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003407 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.094276 B = 8217.046473 C = 9053.529336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.015 3.985 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.534 4.534 8 H 0.044 0.956 9 C -0.009 4.009 10 C 0.121 3.879 11 N -0.583 5.583 12 C 0.518 3.482 13 O -0.524 6.524 14 C -0.133 4.133 15 C -0.082 4.082 16 C -0.095 4.095 17 C -0.126 4.126 18 C 0.063 3.937 19 N -0.534 5.534 20 C 0.133 3.867 21 C 0.034 3.966 22 C -0.279 4.279 23 C 0.071 3.929 24 N -0.474 5.474 25 H 0.449 0.551 26 N -0.325 5.325 27 C 0.088 3.912 28 C 0.531 3.469 29 O -0.480 6.480 30 H 0.270 0.730 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.160 0.840 46 H 0.215 0.785 47 H 0.056 0.944 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.708 -4.725 -6.874 36.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.572 4.572 8 H 0.062 0.938 9 C -0.047 4.047 10 C 0.000 4.000 11 N -0.325 5.325 12 C 0.309 3.691 13 O -0.399 6.399 14 C -0.172 4.172 15 C -0.085 4.085 16 C -0.133 4.133 17 C -0.164 4.164 18 C -0.064 4.064 19 N -0.257 5.257 20 C 0.003 3.997 21 C -0.134 4.134 22 C -0.309 4.309 23 C -0.077 4.077 24 N -0.184 5.184 25 H 0.295 0.705 26 N -0.151 5.151 27 C -0.041 4.041 28 C 0.320 3.680 29 O -0.350 6.350 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.130 0.870 44 H 0.088 0.912 45 H 0.178 0.822 46 H 0.232 0.768 47 H 0.075 0.925 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 34.108 -4.131 -6.017 34.881 hybrid contribution 0.381 0.873 0.017 0.952 sum 34.489 -3.259 -6.001 35.159 Atomic orbital electron populations 1.70027 1.07873 1.28374 1.51726 1.25849 0.95634 1.03036 0.93767 0.85758 0.79222 0.78995 0.79318 1.18935 1.19775 1.18456 1.21164 0.90691 0.93896 1.51452 0.93818 1.19638 0.95276 0.93815 0.95968 1.21505 0.76595 0.98894 1.02993 1.47275 1.09435 1.65488 1.10288 1.21629 0.91664 0.72688 0.83105 1.90741 1.78999 1.47497 1.22636 1.22694 0.90936 1.09585 0.93988 1.21225 0.91076 1.00725 0.95504 1.21534 1.01784 0.93298 0.96658 1.21737 1.01987 0.97881 0.94791 1.22107 0.95130 0.88786 1.00388 1.62248 1.54180 1.02756 1.06472 1.20731 0.86095 0.92107 1.00730 1.23328 0.98564 0.98302 0.93160 1.21720 0.90450 1.13931 1.04788 1.23217 1.01606 0.95842 0.87040 1.46500 1.04730 1.48637 1.18497 0.70527 1.77334 0.91494 1.24803 1.21439 1.21775 0.99548 0.94299 0.88470 1.21069 0.90231 0.73448 0.83266 1.90704 1.77983 1.44477 1.21840 0.92092 0.96972 0.96929 0.90060 0.90227 0.84497 0.82410 0.87338 0.90582 0.88603 0.92506 0.93137 0.89773 0.87036 0.91196 0.82202 0.76834 0.92512 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.93 13.96 21.45 0.30 -60.63 16 2 C 0.02 0.95 5.47 84.65 0.46 1.41 16 3 Si 0.94 47.66 27.47 68.60 1.88 49.55 16 4 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -12.77 6.54 99.48 0.65 -12.12 16 7 C -0.53 -32.87 9.66 25.60 0.25 -32.62 16 8 H 0.04 2.88 7.99 -2.91 -0.02 2.86 16 9 C -0.01 -0.46 4.37 29.85 0.13 -0.33 16 10 C 0.12 5.44 5.50 86.38 0.48 5.91 16 11 N -0.58 -21.39 2.56 -756.73 -1.94 -23.33 16 12 C 0.52 16.90 8.09 88.02 0.71 17.61 16 13 O -0.52 -21.02 17.48 -2.88 -0.05 -21.07 16 14 C -0.13 -2.58 6.30 30.34 0.19 -2.38 16 15 C -0.08 -1.77 0.69 -52.98 -0.04 -1.81 16 16 C -0.10 -1.45 4.61 30.51 0.14 -1.31 16 17 C -0.13 -2.13 5.81 30.69 0.18 -1.95 16 18 C 0.06 1.02 5.03 86.33 0.43 1.45 16 19 N -0.53 -11.66 4.23 -901.78 -3.81 -15.47 16 20 C 0.13 2.63 5.94 85.56 0.51 3.14 16 21 C 0.03 0.60 4.82 43.10 0.21 0.81 16 22 C -0.28 -3.33 9.91 21.99 0.22 -3.11 16 23 C 0.07 0.55 11.99 83.54 1.00 1.55 16 24 N -0.47 -5.32 7.36 -57.59 -0.42 -5.74 16 25 H 0.45 2.46 8.96 -213.33 -1.91 0.55 16 26 N -0.33 -6.28 11.67 -47.39 -0.55 -6.83 16 27 C 0.09 1.92 3.42 86.11 0.29 2.21 16 28 C 0.53 17.48 6.52 87.81 0.57 18.06 16 29 O -0.48 -18.77 15.02 -2.87 -0.04 -18.81 16 30 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 31 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 33 H 0.08 3.67 7.84 -2.39 -0.02 3.65 16 34 H 0.08 3.61 7.83 -2.39 -0.02 3.59 16 35 H 0.14 2.23 7.72 -2.39 -0.02 2.21 16 36 H 0.16 1.87 7.72 -2.39 -0.02 1.85 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.39 6.26 -2.39 -0.01 1.38 16 41 H 0.05 0.69 6.91 -2.39 -0.02 0.67 16 42 H 0.08 1.23 8.05 -2.39 -0.02 1.21 16 43 H 0.11 1.81 8.06 -2.39 -0.02 1.79 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 46 H 0.22 -0.24 8.06 -2.91 -0.02 -0.27 16 47 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 48 H 0.07 1.36 6.61 -2.39 -0.02 1.34 16 Total: -1.00 -85.32 382.47 0.12 -85.19 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -0.98 Total: 8.52 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.74 Total: 8.63 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -6.43 Total: -112.00 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.09 Total: -39.88 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.88 Total: 49.55 kcal Total: -85.32 0.12 -85.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272537409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.721 kcal (2) G-P(sol) polarization free energy of solvation -85.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds