Wall clock time and date at job start Sat Apr 11 2020 07:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47227 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.46997 * 30.00050 * 3 2 1 6 6 H 1.48501 * 109.47279 * 150.00198 * 3 2 1 7 7 C 1.37879 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99688 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46777 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.33958 * 122.78706 * 270.00187 * 11 10 9 13 13 O 1.21224 * 125.41221 * 359.96451 * 12 11 10 14 14 C 1.51453 * 109.17854 * 179.97438 * 12 11 10 15 15 C 1.53736 * 103.35582 * 359.97438 * 14 12 11 16 16 C 1.52535 * 110.30924 * 118.68028 * 15 14 12 17 17 C 1.53219 * 109.19443 * 178.69896 * 16 15 14 18 18 C 1.53047 * 109.20899 * 303.22565 * 17 16 15 19 19 N 1.46843 * 109.62575 * 59.62495 * 18 17 16 20 20 C 1.46897 * 111.00337 * 173.77670 * 19 18 17 21 21 C 1.50697 * 109.46983 * 66.04483 * 20 19 18 22 22 C 1.39877 * 126.04137 * 269.99922 * 21 20 19 23 23 N 1.30833 * 108.20100 * 180.02562 * 22 21 20 24 24 N 1.40085 * 108.20858 * 0.02562 * 23 22 21 25 25 H 0.97001 * 126.03073 * 179.97438 * 24 23 22 26 26 C 1.34945 * 107.92516 * 0.02562 * 24 23 22 27 27 C 1.46957 * 111.15229 * 297.84190 * 19 18 17 28 28 C 1.34052 * 122.78356 * 89.99960 * 11 10 9 29 29 O 1.21233 * 125.50327 * 359.97438 * 28 11 10 30 30 H 0.96994 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47184 * 59.99745 * 9 7 2 32 32 H 1.08996 * 109.47032 * 299.99472 * 9 7 2 33 33 H 1.09000 * 109.46875 * 60.00180 * 10 9 7 34 34 H 1.08996 * 109.47081 * 299.99654 * 10 9 7 35 35 H 1.08995 * 110.64079 * 241.52768 * 14 12 11 36 36 H 1.08999 * 110.64488 * 118.46102 * 14 12 11 37 37 H 1.09006 * 109.51374 * 58.78012 * 16 15 14 38 38 H 1.08997 * 109.51594 * 298.61449 * 16 15 14 39 39 H 1.09000 * 109.51510 * 183.31023 * 17 16 15 40 40 H 1.08993 * 109.51863 * 63.14958 * 17 16 15 41 41 H 1.08995 * 109.44620 * 299.57710 * 18 17 16 42 42 H 1.08997 * 109.41837 * 179.65297 * 18 17 16 43 43 H 1.08999 * 109.46818 * 306.04419 * 20 19 18 44 44 H 1.09000 * 109.47268 * 186.04266 * 20 19 18 45 45 H 1.07995 * 125.89269 * 0.02562 * 22 21 20 46 46 H 1.07994 * 126.12681 * 180.02562 * 26 24 23 47 47 H 1.09002 * 109.45332 * 180.80926 * 27 19 18 48 48 H 1.08998 * 109.45218 * 300.74491 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 6 6.2119 -2.6364 -1.1263 13 8 5.7617 -2.6369 -2.2519 14 6 7.6839 -2.6358 -0.7700 15 6 7.6772 -2.6349 0.7673 16 6 8.3618 -3.8895 1.3005 17 6 8.3696 -3.8468 2.8320 18 6 9.0622 -2.5634 3.2965 19 7 8.3434 -1.3965 2.7693 20 6 8.8930 -0.1486 3.3155 21 6 10.3015 0.0416 2.8146 22 6 11.4658 -0.4207 3.4369 23 7 12.4898 -0.0624 2.7057 24 7 12.0090 0.6408 1.5936 25 1 12.5481 1.0241 0.8842 26 6 10.6636 0.6916 1.6843 27 6 8.3621 -1.3815 1.2999 28 6 6.2124 -2.6366 1.1269 29 8 5.7639 -2.6363 2.2532 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6808 0.8904 32 1 3.8752 -0.6797 -0.8895 33 1 3.6585 -3.1502 -0.8903 34 1 3.6579 -3.1506 0.8896 35 1 8.1714 -1.7391 -1.1524 36 1 8.1721 -3.5324 -1.1519 37 1 9.3869 -3.9294 0.9319 38 1 7.8181 -4.7721 0.9635 39 1 8.9093 -4.7117 3.2176 40 1 7.3445 -3.8617 3.2020 41 1 10.0890 -2.5526 2.9311 42 1 9.0642 -2.5266 4.3858 43 1 8.8983 -0.1999 4.4043 44 1 8.2767 0.6911 2.9944 45 1 11.5113 -0.9772 4.3613 46 1 9.9954 1.1648 0.9801 47 1 7.8346 -0.4985 0.9391 48 1 9.3942 -1.3555 0.9503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272550071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:41 Heat of formation + Delta-G solvation = 17.576999 kcal Electronic energy + Delta-G solvation = -31813.101500 eV Core-core repulsion = 27676.902483 eV Total energy + Delta-G solvation = -4136.199017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12633 -41.55077 -38.97455 -37.83747 -35.59054 -35.03883 -33.36713 -32.35487 -31.80633 -30.40141 -30.33152 -27.86606 -26.50403 -25.44177 -24.08038 -23.23326 -22.49172 -21.54867 -21.49214 -20.47733 -20.16453 -18.59056 -17.94684 -17.24066 -16.41432 -16.25057 -16.14374 -15.61374 -15.22618 -15.14363 -14.82422 -14.68915 -14.34292 -14.19880 -14.05452 -13.83871 -13.66849 -13.35692 -13.20630 -13.17068 -12.78012 -12.66149 -12.60272 -12.50916 -12.20944 -11.73637 -11.58819 -11.16288 -11.04811 -10.99184 -10.93516 -10.68678 -10.66203 -10.23782 -10.03104 -10.00944 -9.80999 -9.50851 -9.28551 -9.01631 -8.94178 -8.55768 -8.38185 -6.06456 -4.05637 1.50972 1.82462 2.37420 2.52959 2.91566 3.05242 3.30703 3.37265 3.41332 3.71792 4.13310 4.26227 4.35037 4.36900 4.44132 4.47761 4.53195 4.79772 4.88947 4.92392 5.03333 5.15070 5.24213 5.26144 5.27698 5.32073 5.33867 5.46730 5.51334 5.55571 5.63059 5.70630 5.73036 5.82955 5.87905 5.93856 5.94842 6.17118 6.23544 6.29434 6.50557 6.85372 6.89984 6.97330 7.08501 7.16179 7.26409 7.43062 7.67386 7.70958 8.19053 8.46960 8.95832 9.54782 11.06613 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003414 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.547980 B = 8199.893903 C = 9042.970186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.075 0.925 9 C -0.020 4.020 10 C 0.111 3.889 11 N -0.572 5.572 12 C 0.523 3.477 13 O -0.484 6.484 14 C -0.152 4.152 15 C -0.094 4.094 16 C -0.097 4.097 17 C -0.127 4.127 18 C 0.061 3.939 19 N -0.515 5.515 20 C 0.130 3.870 21 C -0.271 4.271 22 C 0.062 3.938 23 N -0.298 5.298 24 N -0.478 5.478 25 H 0.439 0.561 26 C 0.068 3.932 27 C 0.078 3.922 28 C 0.537 3.463 29 O -0.447 6.447 30 H 0.264 0.736 31 H 0.022 0.978 32 H 0.015 0.985 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.181 0.819 46 H 0.175 0.825 47 H 0.078 0.922 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.181 -3.109 4.494 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.094 0.906 9 C -0.059 4.059 10 C -0.008 4.008 11 N -0.315 5.315 12 C 0.311 3.689 13 O -0.357 6.357 14 C -0.192 4.192 15 C -0.098 4.098 16 C -0.135 4.135 17 C -0.165 4.165 18 C -0.067 4.067 19 N -0.237 5.237 20 C 0.001 3.999 21 C -0.284 4.284 22 C -0.126 4.126 23 N -0.120 5.120 24 N -0.186 5.186 25 H 0.282 0.718 26 C -0.081 4.081 27 C -0.050 4.050 28 C 0.323 3.677 29 O -0.315 6.315 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.198 0.802 46 H 0.192 0.808 47 H 0.097 0.903 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 27.224 -3.079 4.591 27.779 hybrid contribution 0.498 1.323 -0.742 1.596 sum 27.722 -1.756 3.849 28.043 Atomic orbital electron populations 1.69897 1.06221 1.27002 1.50657 1.24946 0.94721 0.99072 0.94302 0.86786 0.80454 0.83683 0.78481 1.20238 1.21175 1.19053 1.20882 0.88527 0.94852 1.51552 0.90649 1.19837 0.97855 0.91288 0.96874 1.21992 0.73557 1.01717 1.03557 1.47120 1.10938 1.64846 1.08585 1.20667 0.89504 0.74422 0.84280 1.90766 1.77783 1.45750 1.21356 1.22576 0.95243 1.06593 0.94820 1.21157 0.94791 0.99069 0.94810 1.21433 1.00242 0.94883 0.96976 1.21741 1.03587 0.96712 0.94441 1.22035 0.94848 0.90005 0.99836 1.62274 1.53406 1.02115 1.05928 1.20586 0.87250 0.92181 0.99896 1.21043 0.98368 1.09971 0.99057 1.23829 0.89742 0.99327 0.99675 1.77341 1.23036 1.14355 0.97257 1.46369 1.05549 1.45242 1.21393 0.71781 1.22528 0.85648 1.00404 0.99513 1.21858 0.98768 0.95571 0.88831 1.20172 0.88284 0.74936 0.84280 1.90729 1.76962 1.43101 1.20701 0.92598 0.95926 0.96676 0.89664 0.89478 0.86734 0.86482 0.90791 0.91147 0.91340 0.89117 0.94725 0.90629 0.89529 0.89900 0.80229 0.80773 0.90340 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.02 -0.51 4.37 -27.88 -0.12 -0.63 16 10 C 0.11 2.31 5.50 -4.04 -0.02 2.29 16 11 N -0.57 -9.90 2.56 -115.41 -0.30 -10.19 16 12 C 0.52 8.19 8.09 -10.98 -0.09 8.10 16 13 O -0.48 -9.27 17.48 5.61 0.10 -9.17 16 14 C -0.15 -1.52 6.30 -27.13 -0.17 -1.69 16 15 C -0.09 -1.02 0.69 -155.74 -0.11 -1.13 16 16 C -0.10 -0.87 4.60 -26.86 -0.12 -0.99 16 17 C -0.13 -1.19 5.81 -26.59 -0.15 -1.35 16 18 C 0.06 0.53 4.98 -3.83 -0.02 0.52 16 19 N -0.52 -5.29 4.23 -236.41 -1.00 -6.29 16 20 C 0.13 1.12 5.86 -4.98 -0.03 1.09 16 21 C -0.27 -2.12 3.99 -105.05 -0.42 -2.54 16 22 C 0.06 0.50 10.79 -17.36 -0.19 0.32 16 23 N -0.30 -2.78 12.70 30.62 0.39 -2.39 16 24 N -0.48 -3.29 7.36 30.44 0.22 -3.07 16 25 H 0.44 1.78 8.96 -182.61 -1.64 0.14 16 26 C 0.07 0.46 10.51 -17.22 -0.18 0.28 16 27 C 0.08 0.76 3.32 -4.08 -0.01 0.75 16 28 C 0.54 8.40 6.52 -11.25 -0.07 8.33 16 29 O -0.45 -8.25 15.01 5.60 0.08 -8.17 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 32 H 0.01 0.38 7.57 -51.93 -0.39 -0.01 16 33 H 0.08 1.78 7.83 -51.93 -0.41 1.38 16 34 H 0.09 1.81 7.84 -51.93 -0.41 1.40 16 35 H 0.11 0.91 7.72 -51.93 -0.40 0.51 16 36 H 0.12 0.89 7.72 -51.93 -0.40 0.49 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.12 6.25 -51.93 -0.32 0.80 16 41 H 0.03 0.29 6.71 -51.93 -0.35 -0.06 16 42 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.09 0.69 8.06 -51.93 -0.42 0.27 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 48 H 0.05 0.42 6.47 -51.93 -0.34 0.09 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -36.49 381.45 -9.20 -45.69 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.41 Total: -2.42 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.14 Total: -0.02 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.09 Total: -49.13 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.18 Total: -17.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.49 -9.20 -45.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272550071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.265 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds