Wall clock time and date at job start Sat Apr 11 2020 07:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47227 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.46997 * 30.00050 * 3 2 1 6 6 H 1.48501 * 109.47279 * 150.00198 * 3 2 1 7 7 C 1.37879 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99688 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46777 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.33958 * 122.78706 * 270.00187 * 11 10 9 13 13 O 1.21224 * 125.41221 * 359.96451 * 12 11 10 14 14 C 1.51453 * 109.17854 * 179.97438 * 12 11 10 15 15 C 1.53736 * 103.35582 * 359.97438 * 14 12 11 16 16 C 1.52535 * 110.30924 * 118.68028 * 15 14 12 17 17 C 1.53219 * 109.19443 * 178.69896 * 16 15 14 18 18 C 1.53047 * 109.20899 * 303.22565 * 17 16 15 19 19 N 1.46843 * 109.62575 * 59.62495 * 18 17 16 20 20 C 1.46897 * 111.00337 * 173.77670 * 19 18 17 21 21 C 1.50697 * 109.46983 * 66.04483 * 20 19 18 22 22 C 1.39877 * 126.04137 * 269.99922 * 21 20 19 23 23 N 1.30833 * 108.20100 * 180.02562 * 22 21 20 24 24 N 1.40085 * 108.20858 * 0.02562 * 23 22 21 25 25 H 0.97001 * 126.03073 * 179.97438 * 24 23 22 26 26 C 1.34945 * 107.92516 * 0.02562 * 24 23 22 27 27 C 1.46957 * 111.15229 * 297.84190 * 19 18 17 28 28 C 1.34052 * 122.78356 * 89.99960 * 11 10 9 29 29 O 1.21233 * 125.50327 * 359.97438 * 28 11 10 30 30 H 0.96994 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47184 * 59.99745 * 9 7 2 32 32 H 1.08996 * 109.47032 * 299.99472 * 9 7 2 33 33 H 1.09000 * 109.46875 * 60.00180 * 10 9 7 34 34 H 1.08996 * 109.47081 * 299.99654 * 10 9 7 35 35 H 1.08995 * 110.64079 * 241.52768 * 14 12 11 36 36 H 1.08999 * 110.64488 * 118.46102 * 14 12 11 37 37 H 1.09006 * 109.51374 * 58.78012 * 16 15 14 38 38 H 1.08997 * 109.51594 * 298.61449 * 16 15 14 39 39 H 1.09000 * 109.51510 * 183.31023 * 17 16 15 40 40 H 1.08993 * 109.51863 * 63.14958 * 17 16 15 41 41 H 1.08995 * 109.44620 * 299.57710 * 18 17 16 42 42 H 1.08997 * 109.41837 * 179.65297 * 18 17 16 43 43 H 1.08999 * 109.46818 * 306.04419 * 20 19 18 44 44 H 1.09000 * 109.47268 * 186.04266 * 20 19 18 45 45 H 1.07995 * 125.89269 * 0.02562 * 22 21 20 46 46 H 1.07994 * 126.12681 * 180.02562 * 26 24 23 47 47 H 1.09002 * 109.45332 * 180.80926 * 27 19 18 48 48 H 1.08998 * 109.45218 * 300.74491 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 6 6.2119 -2.6364 -1.1263 13 8 5.7617 -2.6369 -2.2519 14 6 7.6839 -2.6358 -0.7700 15 6 7.6772 -2.6349 0.7673 16 6 8.3618 -3.8895 1.3005 17 6 8.3696 -3.8468 2.8320 18 6 9.0622 -2.5634 3.2965 19 7 8.3434 -1.3965 2.7693 20 6 8.8930 -0.1486 3.3155 21 6 10.3015 0.0416 2.8146 22 6 11.4658 -0.4207 3.4369 23 7 12.4898 -0.0624 2.7057 24 7 12.0090 0.6408 1.5936 25 1 12.5481 1.0241 0.8842 26 6 10.6636 0.6916 1.6843 27 6 8.3621 -1.3815 1.2999 28 6 6.2124 -2.6366 1.1269 29 8 5.7639 -2.6363 2.2532 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6808 0.8904 32 1 3.8752 -0.6797 -0.8895 33 1 3.6585 -3.1502 -0.8903 34 1 3.6579 -3.1506 0.8896 35 1 8.1714 -1.7391 -1.1524 36 1 8.1721 -3.5324 -1.1519 37 1 9.3869 -3.9294 0.9319 38 1 7.8181 -4.7721 0.9635 39 1 8.9093 -4.7117 3.2176 40 1 7.3445 -3.8617 3.2020 41 1 10.0890 -2.5526 2.9311 42 1 9.0642 -2.5266 4.3858 43 1 8.8983 -0.1999 4.4043 44 1 8.2767 0.6911 2.9944 45 1 11.5113 -0.9772 4.3613 46 1 9.9954 1.1648 0.9801 47 1 7.8346 -0.4985 0.9391 48 1 9.3942 -1.3555 0.9503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272550071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:40 Heat of formation + Delta-G solvation = -9.291338 kcal Electronic energy + Delta-G solvation = -31814.266598 eV Core-core repulsion = 27676.902483 eV Total energy + Delta-G solvation = -4137.364115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.21322 -42.14988 -39.99859 -38.95654 -36.93029 -36.23218 -35.02310 -33.63270 -32.35720 -32.00667 -30.96759 -28.89319 -27.16359 -27.11537 -25.24198 -23.91702 -23.31014 -23.12409 -22.31163 -21.56613 -20.89769 -19.64392 -19.15321 -18.56271 -17.77878 -17.48161 -17.34103 -16.47754 -16.36994 -15.98903 -15.81680 -15.74367 -15.32770 -15.23894 -15.08853 -14.95872 -14.88264 -14.76754 -14.55677 -14.00506 -13.89801 -13.64056 -13.47605 -13.43379 -13.24486 -13.00746 -12.95418 -12.65941 -12.27023 -12.12970 -11.95329 -11.83244 -11.70263 -11.57833 -11.53186 -11.36146 -11.11951 -10.84262 -10.70143 -10.57805 -10.54896 -9.49552 -9.03833 -8.36102 -6.42034 0.61781 1.00435 1.29502 1.32234 1.43735 1.64076 1.81643 1.86473 2.10520 2.30359 2.95243 2.98253 3.20051 3.31739 3.54111 3.64454 3.89467 4.03243 4.07915 4.13044 4.21435 4.27674 4.32052 4.38739 4.44823 4.55850 4.59975 4.63372 4.65331 4.66710 4.75491 4.80488 4.82760 4.90826 4.95691 5.07768 5.10793 5.15306 5.19279 5.23420 5.28797 5.51330 5.54834 5.70469 6.01477 6.15224 6.24861 6.32671 6.46436 6.48302 6.62819 6.75418 6.91651 7.22574 8.80275 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003414 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.547980 B = 8199.893903 C = 9042.970186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.536 4.536 8 H 0.040 0.960 9 C -0.007 4.007 10 C 0.121 3.879 11 N -0.583 5.583 12 C 0.517 3.483 13 O -0.526 6.526 14 C -0.131 4.131 15 C -0.081 4.081 16 C -0.095 4.095 17 C -0.128 4.128 18 C 0.066 3.934 19 N -0.541 5.541 20 C 0.135 3.865 21 C -0.280 4.280 22 C 0.058 3.942 23 N -0.331 5.331 24 N -0.471 5.471 25 H 0.450 0.550 26 C 0.076 3.924 27 C 0.080 3.920 28 C 0.530 3.470 29 O -0.483 6.483 30 H 0.269 0.731 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.192 0.808 46 H 0.198 0.802 47 H 0.071 0.929 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.190 -2.196 3.889 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.574 4.574 8 H 0.058 0.942 9 C -0.045 4.045 10 C -0.001 4.001 11 N -0.325 5.325 12 C 0.308 3.692 13 O -0.400 6.400 14 C -0.171 4.171 15 C -0.085 4.085 16 C -0.133 4.133 17 C -0.166 4.166 18 C -0.061 4.061 19 N -0.263 5.263 20 C 0.007 3.993 21 C -0.293 4.293 22 C -0.129 4.129 23 N -0.154 5.154 24 N -0.180 5.180 25 H 0.296 0.704 26 C -0.074 4.074 27 C -0.048 4.048 28 C 0.319 3.681 29 O -0.353 6.353 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.209 0.791 46 H 0.215 0.785 47 H 0.090 0.910 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 31.285 -2.179 3.987 31.613 hybrid contribution -0.855 0.968 -0.511 1.389 sum 30.430 -1.210 3.476 30.651 Atomic orbital electron populations 1.70036 1.08081 1.28412 1.51755 1.25929 0.95669 1.03348 0.93703 0.85690 0.79436 0.78491 0.79288 1.18898 1.20115 1.17700 1.21192 0.90915 0.93786 1.51523 0.94212 1.19618 0.95019 0.93695 0.96163 1.21482 0.76855 0.99007 1.02717 1.47293 1.09282 1.65526 1.10414 1.21691 0.91800 0.72662 0.83003 1.90747 1.79022 1.47548 1.22734 1.22712 0.90646 1.09887 0.93815 1.21222 0.90794 1.00940 0.95545 1.21516 1.01770 0.93621 0.96403 1.21725 1.01764 0.97973 0.95093 1.21992 0.95081 0.89161 0.99904 1.62252 1.54609 1.03073 1.06404 1.20464 0.87672 0.91319 0.99859 1.20943 0.97656 1.11026 0.99717 1.24075 0.89629 0.99151 0.99999 1.77306 1.23965 1.15683 0.98410 1.46399 1.05819 1.44677 1.21142 0.70445 1.22891 0.85765 0.99359 0.99368 1.21876 0.99749 0.94425 0.88745 1.21144 0.90368 0.73403 0.83191 1.90714 1.78088 1.44499 1.21988 0.92156 0.96531 0.96781 0.90487 0.90444 0.83477 0.82852 0.87366 0.91157 0.89443 0.92741 0.93436 0.90641 0.89574 0.90617 0.79131 0.78476 0.91030 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.69 5.47 84.66 0.46 1.15 16 3 Si 0.95 45.73 27.47 68.60 1.88 47.61 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.25 -11.59 6.54 99.48 0.65 -10.93 16 7 C -0.54 -32.27 9.66 25.60 0.25 -32.02 16 8 H 0.04 2.59 7.99 -2.91 -0.02 2.57 16 9 C -0.01 -0.34 4.37 29.85 0.13 -0.21 16 10 C 0.12 5.21 5.50 86.38 0.48 5.69 16 11 N -0.58 -19.97 2.56 -756.73 -1.94 -21.91 16 12 C 0.52 15.32 8.09 88.02 0.71 16.03 16 13 O -0.53 -19.70 17.48 -2.86 -0.05 -19.75 16 14 C -0.13 -2.04 6.30 30.34 0.19 -1.85 16 15 C -0.08 -1.50 0.69 -52.98 -0.04 -1.53 16 16 C -0.10 -1.34 4.60 30.51 0.14 -1.20 16 17 C -0.13 -2.12 5.81 30.68 0.18 -1.94 16 18 C 0.07 1.00 4.98 86.33 0.43 1.43 16 19 N -0.54 -9.92 4.23 -901.85 -3.81 -13.73 16 20 C 0.14 2.07 5.86 85.56 0.50 2.57 16 21 C -0.28 -3.57 3.99 -20.14 -0.08 -3.65 16 22 C 0.06 0.80 10.79 85.24 0.92 1.72 16 23 N -0.33 -5.36 12.70 -57.02 -0.72 -6.08 16 24 N -0.47 -5.01 7.36 -57.59 -0.42 -5.43 16 25 H 0.45 2.27 8.96 -213.33 -1.91 0.36 16 26 C 0.08 0.75 10.51 83.54 0.88 1.63 16 27 C 0.08 1.28 3.32 86.11 0.29 1.57 16 28 C 0.53 16.16 6.52 87.81 0.57 16.73 16 29 O -0.48 -18.12 15.01 -2.88 -0.04 -18.16 16 30 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 32 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 33 H 0.08 3.39 7.83 -2.39 -0.02 3.37 16 34 H 0.08 3.43 7.84 -2.39 -0.02 3.41 16 35 H 0.15 1.48 7.72 -2.39 -0.02 1.46 16 36 H 0.15 1.41 7.72 -2.39 -0.02 1.40 16 37 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 1.33 6.25 -2.39 -0.01 1.31 16 41 H 0.05 0.61 6.71 -2.39 -0.02 0.59 16 42 H 0.08 1.12 8.05 -2.39 -0.02 1.10 16 43 H 0.09 1.27 8.06 -2.39 -0.02 1.25 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 46 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 47 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 48 H 0.08 0.87 6.47 -2.39 -0.02 0.85 16 Total: -1.00 -83.40 381.45 0.22 -83.18 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.98 Total: 8.12 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.01 Total: 6.11 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -6.60 Total: -107.10 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.09 Total: -37.91 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -83.40 0.22 -83.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272550071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.888 kcal (2) G-P(sol) polarization free energy of solvation -83.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds