Wall clock time and date at job start Sat Apr 11 2020 07:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99976 * 2 1 4 4 H 1.48498 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47001 * 299.99690 * 3 2 1 6 6 H 1.48497 * 109.47182 * 59.99935 * 3 2 1 7 7 C 1.37878 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47552 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47386 * 179.97438 * 10 9 7 12 12 C 1.33967 * 122.78469 * 89.98150 * 11 10 9 13 13 O 1.21233 * 125.40634 * 359.97438 * 12 11 10 14 14 C 1.51449 * 109.17875 * 180.26588 * 12 11 10 15 15 C 1.53730 * 103.35973 * 359.60206 * 14 12 11 16 16 C 1.52534 * 110.52718 * 241.58670 * 15 14 12 17 17 C 1.53225 * 109.20031 * 181.42972 * 16 15 14 18 18 C 1.53044 * 109.20099 * 56.77729 * 17 16 15 19 19 N 1.46860 * 109.62498 * 300.36624 * 18 17 16 20 20 C 1.46900 * 110.99770 * 186.22625 * 19 18 17 21 21 C 1.50701 * 109.47267 * 45.86067 * 20 19 18 22 22 C 1.39871 * 126.03987 * 269.69099 * 21 20 19 23 23 N 1.30835 * 108.20194 * 179.81754 * 22 21 20 24 24 N 1.40091 * 108.20542 * 0.43304 * 23 22 21 25 25 H 0.96991 * 126.03673 * 179.73603 * 24 23 22 26 26 C 1.34951 * 107.92466 * 359.72398 * 24 23 22 27 27 C 1.46953 * 111.14074 * 62.17153 * 19 18 17 28 28 C 1.34057 * 122.78856 * 269.97917 * 11 10 9 29 29 O 1.21223 * 125.50458 * 0.03211 * 28 11 10 30 30 H 0.97002 * 120.00206 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47528 * 59.99593 * 9 7 2 32 32 H 1.09001 * 109.47317 * 300.00278 * 9 7 2 33 33 H 1.09010 * 109.46425 * 60.00057 * 10 9 7 34 34 H 1.08996 * 109.47152 * 300.00634 * 10 9 7 35 35 H 1.08997 * 110.64507 * 118.20542 * 14 12 11 36 36 H 1.09001 * 110.64194 * 241.27033 * 14 12 11 37 37 H 1.09003 * 109.51559 * 301.34982 * 16 15 14 38 38 H 1.09005 * 109.51704 * 61.51597 * 16 15 14 39 39 H 1.08994 * 109.51619 * 296.86024 * 17 16 15 40 40 H 1.08999 * 109.51390 * 176.69019 * 17 16 15 41 41 H 1.09005 * 109.44163 * 180.32510 * 18 17 16 42 42 H 1.08993 * 109.42024 * 60.40225 * 18 17 16 43 43 H 1.09001 * 109.46913 * 165.86003 * 20 19 18 44 44 H 1.08996 * 109.47256 * 285.85860 * 20 19 18 45 45 H 1.08005 * 125.89521 * 359.97438 * 22 21 20 46 46 H 1.07998 * 126.12781 * 179.97438 * 26 24 23 47 47 H 1.09009 * 109.45094 * 179.18277 * 27 19 18 48 48 H 1.08991 * 109.43943 * 59.24384 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.1493 -5.5591 -1.1248 13 8 1.3735 -5.1690 -2.2506 14 6 0.4078 -6.8305 -0.7679 15 6 0.4177 -6.8279 0.7693 16 6 1.1626 -8.0480 1.3015 17 6 1.1233 -8.0339 2.8332 18 6 -0.3340 -7.9926 3.2989 19 7 -0.9859 -6.7864 2.7727 20 6 -2.3410 -6.6390 3.3204 21 6 -2.3106 -6.8792 4.8078 22 6 -2.4901 -8.1107 5.4463 23 7 -2.3916 -7.9201 6.7369 24 7 -2.1558 -6.5575 6.9614 25 1 -2.0446 -6.1325 7.8261 26 6 -2.1105 -5.9407 5.7619 27 6 -1.0097 -6.7949 1.3034 28 6 1.1505 -5.5594 1.1284 29 8 1.3749 -5.1707 2.2545 30 1 -0.4850 0.8400 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 2.8719 -3.6043 0.8906 34 1 2.8719 -3.6043 -0.8894 35 1 -0.6134 -6.7993 -1.1477 36 1 0.9352 -7.7037 -1.1520 37 1 0.6846 -8.9557 0.9332 38 1 2.1986 -8.0182 0.9636 39 1 1.6488 -7.1535 3.2028 40 1 1.6031 -8.9338 3.2180 41 1 -0.3664 -7.9766 4.3883 42 1 -0.8565 -8.8764 2.9332 43 1 -2.7051 -5.6308 3.1226 44 1 -3.0043 -7.3639 2.8487 45 1 -2.6753 -9.0561 4.9581 46 1 -1.9447 -4.8869 5.5936 47 1 -1.5112 -5.8965 0.9433 48 1 -1.5483 -7.6758 0.9545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272550072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:43 Heat of formation + Delta-G solvation = 15.224663 kcal Electronic energy + Delta-G solvation = -31451.709638 eV Core-core repulsion = 27315.408616 eV Total energy + Delta-G solvation = -4136.301022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94441 -41.37513 -38.86005 -37.70716 -35.46402 -34.89714 -33.29984 -32.22080 -31.64385 -30.66283 -29.83143 -27.53353 -26.27542 -25.20595 -23.94901 -23.19247 -22.37202 -21.74206 -21.47866 -20.25539 -19.97858 -18.32996 -17.88837 -16.91171 -16.34463 -16.07782 -15.95390 -15.73995 -15.05456 -14.69537 -14.58892 -14.52682 -14.49071 -14.34408 -13.92749 -13.72657 -13.61185 -13.17628 -12.98208 -12.90727 -12.75355 -12.48419 -12.42334 -12.23319 -12.03681 -11.70852 -11.48950 -11.07655 -10.96930 -10.89526 -10.79072 -10.63174 -10.54914 -10.14516 -10.06035 -9.87714 -9.79712 -9.39344 -9.18072 -8.79498 -8.77364 -8.37994 -8.17061 -6.02785 -4.05893 1.74649 1.95432 2.51496 2.73580 3.03261 3.20136 3.31521 3.38649 3.43293 3.85119 4.25038 4.37061 4.45440 4.46639 4.49218 4.62049 4.79100 4.92058 4.98995 5.04535 5.12842 5.29744 5.33283 5.34032 5.37850 5.43876 5.47823 5.52570 5.56179 5.64226 5.67735 5.79032 5.86818 5.99715 6.00754 6.06788 6.09186 6.35978 6.36954 6.41185 6.71728 7.02572 7.07832 7.08950 7.33332 7.45280 7.60632 7.74958 7.81573 7.94204 8.25608 8.37999 8.99374 9.57945 11.08898 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.003311 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.794876 B = 8453.942017 C =10354.359274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.015 3.985 10 C 0.102 3.898 11 N -0.570 5.570 12 C 0.524 3.476 13 O -0.486 6.486 14 C -0.152 4.152 15 C -0.093 4.093 16 C -0.098 4.098 17 C -0.127 4.127 18 C 0.062 3.938 19 N -0.523 5.523 20 C 0.134 3.866 21 C -0.236 4.236 22 C 0.057 3.943 23 N -0.301 5.301 24 N -0.480 5.480 25 H 0.439 0.561 26 C 0.086 3.914 27 C 0.078 3.922 28 C 0.539 3.461 29 O -0.450 6.450 30 H 0.261 0.739 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.027 0.973 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.178 0.822 46 H 0.180 0.820 47 H 0.084 0.916 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 -20.622 7.887 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.022 4.022 10 C -0.017 4.017 11 N -0.312 5.312 12 C 0.312 3.688 13 O -0.359 6.359 14 C -0.192 4.192 15 C -0.097 4.097 16 C -0.135 4.135 17 C -0.164 4.164 18 C -0.066 4.066 19 N -0.247 5.247 20 C 0.006 3.994 21 C -0.248 4.248 22 C -0.131 4.131 23 N -0.123 5.123 24 N -0.187 5.187 25 H 0.283 0.717 26 C -0.062 4.062 27 C -0.051 4.051 28 C 0.325 3.675 29 O -0.318 6.318 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.045 0.955 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.195 0.805 46 H 0.197 0.803 47 H 0.102 0.898 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.734 -20.187 9.210 22.688 hybrid contribution 0.015 1.038 -0.727 1.267 sum -4.719 -19.149 8.483 21.469 Atomic orbital electron populations 1.69979 1.06099 1.26607 1.50390 1.24984 0.94864 0.99314 0.95034 0.86477 0.80114 0.83493 0.77577 1.19626 1.20952 1.20952 1.21059 0.93091 0.90435 1.51291 0.92325 1.19356 0.94184 0.90804 0.97886 1.22196 0.96086 0.80762 1.02635 1.47082 1.51523 1.24057 1.08518 1.20653 0.78239 0.85623 0.84281 1.90756 1.53865 1.69831 1.21399 1.22578 1.03894 0.98072 0.94694 1.21132 0.97700 0.96033 0.94854 1.21441 1.00043 0.95178 0.96877 1.21736 0.97037 1.03188 0.94452 1.22070 0.94133 0.89804 1.00553 1.61979 1.18259 1.38992 1.05472 1.20310 0.88729 1.01646 0.88686 1.19902 1.16150 0.92711 0.96059 1.23784 0.99546 0.98863 0.90895 1.77302 1.23615 0.93640 1.17748 1.46310 1.57896 1.06311 1.08228 0.71725 1.22531 0.98856 0.99828 0.85016 1.21872 0.92960 1.01955 0.88295 1.20124 0.78227 0.84882 0.84255 1.90710 1.51628 1.68658 1.20812 0.92976 0.96135 0.95916 0.90215 0.90290 0.86471 0.86570 0.90636 0.91259 0.89307 0.91547 0.90166 0.95459 0.89838 0.94157 0.80482 0.80285 0.89801 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.41 5.30 -27.88 -0.15 0.26 16 10 C 0.10 2.23 5.50 -4.05 -0.02 2.20 16 11 N -0.57 -10.45 2.56 -115.41 -0.30 -10.74 16 12 C 0.52 8.75 8.09 -10.98 -0.09 8.66 16 13 O -0.49 -9.84 17.48 5.60 0.10 -9.74 16 14 C -0.15 -1.64 6.30 -27.14 -0.17 -1.81 16 15 C -0.09 -1.08 0.69 -155.74 -0.11 -1.19 16 16 C -0.10 -0.91 4.61 -26.85 -0.12 -1.04 16 17 C -0.13 -1.31 5.81 -26.59 -0.15 -1.47 16 18 C 0.06 0.62 4.77 -3.82 -0.02 0.60 16 19 N -0.52 -5.93 4.17 -236.39 -0.98 -6.92 16 20 C 0.13 1.32 5.77 -4.98 -0.03 1.30 16 21 C -0.24 -2.34 4.18 -105.05 -0.44 -2.78 16 22 C 0.06 0.54 10.39 -17.37 -0.18 0.36 16 23 N -0.30 -3.28 12.70 30.63 0.39 -2.89 16 24 N -0.48 -4.34 7.36 30.45 0.22 -4.11 16 25 H 0.44 2.69 8.96 -182.61 -1.64 1.05 16 26 C 0.09 0.82 11.90 -17.22 -0.20 0.62 16 27 C 0.08 0.83 3.95 -4.08 -0.02 0.81 16 28 C 0.54 8.95 6.52 -11.24 -0.07 8.88 16 29 O -0.45 -8.74 15.01 5.61 0.08 -8.66 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.71 7.84 -51.92 -0.41 1.30 16 34 H 0.08 1.70 7.83 -51.93 -0.41 1.30 16 35 H 0.12 1.05 7.71 -51.93 -0.40 0.65 16 36 H 0.12 0.93 7.72 -51.93 -0.40 0.53 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.21 6.26 -51.93 -0.32 0.88 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.88 5.64 -51.93 -0.29 0.59 16 42 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 45 H 0.18 1.27 8.06 -52.48 -0.42 0.84 16 46 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.08 0.99 8.13 -51.92 -0.42 0.57 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -36.08 387.24 -9.60 -45.68 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.48 Total: -0.85 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.19 Total: 1.83 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.07 Total: -50.92 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.08 -9.60 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272550072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.907 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds