Wall clock time and date at job start Sat Apr 11 2020 07:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99976 * 2 1 4 4 H 1.48498 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47001 * 299.99690 * 3 2 1 6 6 H 1.48497 * 109.47182 * 59.99935 * 3 2 1 7 7 C 1.37878 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47552 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47386 * 179.97438 * 10 9 7 12 12 C 1.33967 * 122.78469 * 89.98150 * 11 10 9 13 13 O 1.21233 * 125.40634 * 359.97438 * 12 11 10 14 14 C 1.51449 * 109.17875 * 180.26588 * 12 11 10 15 15 C 1.53730 * 103.35973 * 359.60206 * 14 12 11 16 16 C 1.52534 * 110.52718 * 241.58670 * 15 14 12 17 17 C 1.53225 * 109.20031 * 181.42972 * 16 15 14 18 18 C 1.53044 * 109.20099 * 56.77729 * 17 16 15 19 19 N 1.46860 * 109.62498 * 300.36624 * 18 17 16 20 20 C 1.46900 * 110.99770 * 186.22625 * 19 18 17 21 21 C 1.50701 * 109.47267 * 45.86067 * 20 19 18 22 22 C 1.39871 * 126.03987 * 269.69099 * 21 20 19 23 23 N 1.30835 * 108.20194 * 179.81754 * 22 21 20 24 24 N 1.40091 * 108.20542 * 0.43304 * 23 22 21 25 25 H 0.96991 * 126.03673 * 179.73603 * 24 23 22 26 26 C 1.34951 * 107.92466 * 359.72398 * 24 23 22 27 27 C 1.46953 * 111.14074 * 62.17153 * 19 18 17 28 28 C 1.34057 * 122.78856 * 269.97917 * 11 10 9 29 29 O 1.21223 * 125.50458 * 0.03211 * 28 11 10 30 30 H 0.97002 * 120.00206 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47528 * 59.99593 * 9 7 2 32 32 H 1.09001 * 109.47317 * 300.00278 * 9 7 2 33 33 H 1.09010 * 109.46425 * 60.00057 * 10 9 7 34 34 H 1.08996 * 109.47152 * 300.00634 * 10 9 7 35 35 H 1.08997 * 110.64507 * 118.20542 * 14 12 11 36 36 H 1.09001 * 110.64194 * 241.27033 * 14 12 11 37 37 H 1.09003 * 109.51559 * 301.34982 * 16 15 14 38 38 H 1.09005 * 109.51704 * 61.51597 * 16 15 14 39 39 H 1.08994 * 109.51619 * 296.86024 * 17 16 15 40 40 H 1.08999 * 109.51390 * 176.69019 * 17 16 15 41 41 H 1.09005 * 109.44163 * 180.32510 * 18 17 16 42 42 H 1.08993 * 109.42024 * 60.40225 * 18 17 16 43 43 H 1.09001 * 109.46913 * 165.86003 * 20 19 18 44 44 H 1.08996 * 109.47256 * 285.85860 * 20 19 18 45 45 H 1.08005 * 125.89521 * 359.97438 * 22 21 20 46 46 H 1.07998 * 126.12781 * 179.97438 * 26 24 23 47 47 H 1.09009 * 109.45094 * 179.18277 * 27 19 18 48 48 H 1.08991 * 109.43943 * 59.24384 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.1493 -5.5591 -1.1248 13 8 1.3735 -5.1690 -2.2506 14 6 0.4078 -6.8305 -0.7679 15 6 0.4177 -6.8279 0.7693 16 6 1.1626 -8.0480 1.3015 17 6 1.1233 -8.0339 2.8332 18 6 -0.3340 -7.9926 3.2989 19 7 -0.9859 -6.7864 2.7727 20 6 -2.3410 -6.6390 3.3204 21 6 -2.3106 -6.8792 4.8078 22 6 -2.4901 -8.1107 5.4463 23 7 -2.3916 -7.9201 6.7369 24 7 -2.1558 -6.5575 6.9614 25 1 -2.0446 -6.1325 7.8261 26 6 -2.1105 -5.9407 5.7619 27 6 -1.0097 -6.7949 1.3034 28 6 1.1505 -5.5594 1.1284 29 8 1.3749 -5.1707 2.2545 30 1 -0.4850 0.8400 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 2.8719 -3.6043 0.8906 34 1 2.8719 -3.6043 -0.8894 35 1 -0.6134 -6.7993 -1.1477 36 1 0.9352 -7.7037 -1.1520 37 1 0.6846 -8.9557 0.9332 38 1 2.1986 -8.0182 0.9636 39 1 1.6488 -7.1535 3.2028 40 1 1.6031 -8.9338 3.2180 41 1 -0.3664 -7.9766 4.3883 42 1 -0.8565 -8.8764 2.9332 43 1 -2.7051 -5.6308 3.1226 44 1 -3.0043 -7.3639 2.8487 45 1 -2.6753 -9.0561 4.9581 46 1 -1.9447 -4.8869 5.5936 47 1 -1.5112 -5.8965 0.9433 48 1 -1.5483 -7.6758 0.9545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272550072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:43 Heat of formation + Delta-G solvation = -10.828299 kcal Electronic energy + Delta-G solvation = -31452.839379 eV Core-core repulsion = 27315.408616 eV Total energy + Delta-G solvation = -4137.430763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.15090 -42.12815 -39.98239 -38.93134 -36.89391 -36.20523 -35.03937 -33.44904 -32.38794 -31.71048 -31.26815 -28.63326 -27.05501 -27.00697 -25.22242 -23.97528 -23.64147 -23.13443 -22.39913 -21.49551 -20.76027 -19.52639 -18.84372 -18.60301 -17.66292 -17.47327 -17.25529 -16.82400 -16.49615 -15.95667 -15.75491 -15.44310 -15.31944 -15.23172 -15.04726 -14.93595 -14.81464 -14.70775 -14.32996 -13.99854 -13.79894 -13.65209 -13.46391 -13.34460 -13.20199 -12.92233 -12.77743 -12.68963 -12.53375 -12.12811 -12.06239 -11.91849 -11.71370 -11.57344 -11.40276 -11.32808 -11.06528 -10.67920 -10.62394 -10.53854 -10.49268 -9.51679 -8.90261 -8.27222 -6.40224 0.65135 1.00585 1.37363 1.38753 1.52025 1.68319 1.78851 1.92686 2.08205 2.37869 2.99286 3.06498 3.23951 3.35579 3.57328 3.67142 3.89106 4.03883 4.10335 4.17415 4.24435 4.29553 4.38409 4.43269 4.54088 4.56646 4.62717 4.65044 4.68190 4.72897 4.74225 4.81417 4.82161 4.90266 4.92444 5.05677 5.11698 5.28632 5.33007 5.33386 5.38037 5.55137 5.69939 5.71621 6.06185 6.07518 6.29071 6.36032 6.43191 6.52036 6.72561 6.74352 6.95914 7.29374 8.85594 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.003311 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.794876 B = 8453.942017 C =10354.359274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.116 3.884 11 N -0.583 5.583 12 C 0.515 3.485 13 O -0.530 6.530 14 C -0.130 4.130 15 C -0.079 4.079 16 C -0.093 4.093 17 C -0.127 4.127 18 C 0.068 3.932 19 N -0.552 5.552 20 C 0.139 3.861 21 C -0.245 4.245 22 C 0.061 3.939 23 N -0.329 5.329 24 N -0.476 5.476 25 H 0.448 0.552 26 C 0.074 3.926 27 C 0.076 3.924 28 C 0.529 3.471 29 O -0.487 6.487 30 H 0.266 0.734 31 H -0.012 1.012 32 H -0.011 1.011 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.184 0.816 47 H 0.064 0.936 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 -23.162 7.310 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.084 0.916 9 C -0.006 4.006 10 C -0.005 4.005 11 N -0.325 5.325 12 C 0.306 3.694 13 O -0.405 6.405 14 C -0.169 4.169 15 C -0.083 4.083 16 C -0.130 4.130 17 C -0.165 4.165 18 C -0.059 4.059 19 N -0.277 5.277 20 C 0.011 3.989 21 C -0.256 4.256 22 C -0.126 4.126 23 N -0.151 5.151 24 N -0.185 5.185 25 H 0.294 0.706 26 C -0.075 4.075 27 C -0.052 4.052 28 C 0.318 3.682 29 O -0.358 6.358 30 H 0.075 0.925 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.138 0.862 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.220 0.780 46 H 0.201 0.799 47 H 0.082 0.918 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.968 -22.765 8.654 24.856 hybrid contribution 0.077 1.873 -0.500 1.940 sum -4.891 -20.892 8.155 22.954 Atomic orbital electron populations 1.70111 1.07922 1.27979 1.50884 1.26011 0.95845 1.03562 0.94148 0.85296 0.79059 0.78123 0.77950 1.18385 1.20092 1.20073 1.21501 0.93705 0.91638 1.51711 0.91633 1.19078 0.94191 0.92840 0.94515 1.21658 0.95009 0.81503 1.02343 1.47305 1.51782 1.23021 1.10421 1.21781 0.77498 0.87106 0.83004 1.90729 1.55572 1.71352 1.22825 1.22722 1.04885 0.95581 0.93743 1.21212 0.97833 0.93726 0.95520 1.21536 1.00314 0.95334 0.95864 1.21712 0.97104 1.02182 0.95462 1.22005 0.93927 0.90235 0.99721 1.61887 1.19247 1.40453 1.06084 1.20248 0.88539 1.01398 0.88698 1.20031 1.16363 0.93033 0.96213 1.24152 0.98455 0.99585 0.90399 1.77252 1.24729 0.94431 1.18708 1.46332 1.57626 1.05941 1.08639 0.70600 1.22754 0.98917 1.00300 0.85483 1.21931 0.92191 1.02980 0.88079 1.21207 0.77555 0.86284 0.83131 1.90689 1.52982 1.69981 1.22139 0.92549 0.99406 0.99264 0.90478 0.90425 0.83591 0.82276 0.86201 0.91163 0.93500 0.89515 0.91655 0.92546 0.91489 0.91904 0.78036 0.79895 0.91753 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -32.55 9.11 25.60 0.23 -32.32 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.79 5.30 29.85 0.16 1.95 16 10 C 0.12 5.33 5.50 86.38 0.47 5.81 16 11 N -0.58 -22.00 2.56 -756.73 -1.94 -23.94 16 12 C 0.51 16.96 8.09 88.02 0.71 17.68 16 13 O -0.53 -21.67 17.48 -2.88 -0.05 -21.72 16 14 C -0.13 -2.32 6.30 30.33 0.19 -2.13 16 15 C -0.08 -1.62 0.69 -52.98 -0.04 -1.66 16 16 C -0.09 -1.36 4.61 30.51 0.14 -1.22 16 17 C -0.13 -2.34 5.81 30.68 0.18 -2.16 16 18 C 0.07 1.19 4.77 86.33 0.41 1.60 16 19 N -0.55 -11.65 4.17 -901.81 -3.76 -15.41 16 20 C 0.14 2.56 5.77 85.56 0.49 3.05 16 21 C -0.24 -4.65 4.18 -20.14 -0.08 -4.73 16 22 C 0.06 1.07 10.39 85.24 0.89 1.95 16 23 N -0.33 -6.89 12.70 -57.02 -0.72 -7.62 16 24 N -0.48 -8.60 7.36 -57.59 -0.42 -9.02 16 25 H 0.45 5.60 8.96 -213.34 -1.91 3.68 16 26 C 0.07 1.44 11.90 83.54 0.99 2.44 16 27 C 0.08 1.41 3.95 86.11 0.34 1.75 16 28 C 0.53 17.80 6.52 87.81 0.57 18.37 16 29 O -0.49 -19.88 15.01 -2.85 -0.04 -19.92 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.08 3.52 7.84 -2.38 -0.02 3.50 16 34 H 0.08 3.53 7.83 -2.39 -0.02 3.51 16 35 H 0.15 1.91 7.71 -2.39 -0.02 1.89 16 36 H 0.16 1.60 7.72 -2.39 -0.02 1.58 16 37 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.05 1.28 6.26 -2.39 -0.01 1.26 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.33 5.64 -2.38 -0.01 1.32 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 45 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.06 1.44 8.13 -2.38 -0.02 1.42 16 48 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -84.51 387.24 0.57 -83.94 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -0.93 Total: 13.03 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.13 Total: 11.00 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -6.56 Total: -113.75 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.09 Total: -41.64 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -84.51 0.57 -83.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272550072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.113 kcal (2) G-P(sol) polarization free energy of solvation -84.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds