Wall clock time and date at job start Sat Apr 11 2020 07:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48497 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46722 * 299.99903 * 3 2 1 6 6 H 1.48497 * 109.47198 * 59.99909 * 3 2 1 7 7 C 1.37886 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99807 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46926 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46893 * 179.97438 * 10 9 7 12 12 C 1.46276 * 118.71121 * 90.00262 * 11 10 9 13 13 C 1.52561 * 109.56233 * 163.93759 * 12 11 10 14 14 C 1.53392 * 113.81134 * 273.97152 * 13 12 11 15 15 N 1.48057 * 86.02445 * 221.83776 * 14 13 12 16 16 C 1.46899 * 110.99980 * 137.22926 * 15 14 13 17 17 C 1.50694 * 109.47119 * 70.54580 * 16 15 14 18 18 C 1.34661 * 120.73100 * 259.99522 * 17 16 15 19 19 N 1.35903 * 121.27400 * 180.02562 * 18 17 16 20 20 H 0.97002 * 118.60346 * 180.02562 * 19 18 17 21 21 C 1.35910 * 122.80467 * 359.97438 * 19 18 17 22 22 C 1.34662 * 121.27141 * 0.02562 * 21 19 18 23 23 C 1.46867 * 120.73066 * 79.72214 * 17 16 15 24 24 N 1.32186 * 121.21474 * 0.02562 * 23 17 16 25 25 C 1.48059 * 90.84098 * 24.30134 * 15 14 13 26 26 O 1.42688 * 112.47406 * 45.21992 * 13 12 11 27 27 C 1.43040 * 112.94950 * 295.90042 * 26 13 12 28 28 C 1.33715 * 118.71742 * 270.02236 * 11 10 9 29 29 O 1.21278 * 118.38062 * 3.18725 * 28 11 10 30 30 H 0.96990 * 120.00188 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47015 * 60.00465 * 9 7 2 32 32 H 1.09000 * 109.47229 * 300.00611 * 9 7 2 33 33 H 1.08997 * 109.47188 * 60.00211 * 10 9 7 34 34 H 1.08994 * 109.47035 * 299.99937 * 10 9 7 35 35 H 1.08998 * 109.45583 * 283.96079 * 12 11 10 36 36 H 1.08998 * 109.45725 * 43.90735 * 12 11 10 37 37 H 1.09004 * 113.77903 * 336.11700 * 14 13 12 38 38 H 1.09000 * 113.78713 * 107.55193 * 14 13 12 39 39 H 1.09000 * 109.46708 * 190.54949 * 16 15 14 40 40 H 1.09000 * 109.47253 * 310.53913 * 16 15 14 41 41 H 1.08001 * 119.36671 * 359.97438 * 18 17 16 42 42 H 1.07991 * 119.36779 * 179.97438 * 21 19 18 43 43 H 1.08001 * 120.73171 * 180.02562 * 22 21 19 44 44 H 0.97002 * 120.00216 * 179.97438 * 24 23 17 45 45 H 1.09003 * 113.78350 * 221.41639 * 25 15 14 46 46 H 1.09000 * 113.78684 * 89.97723 * 25 15 14 47 47 H 1.09007 * 109.35351 * 287.07236 * 27 26 13 48 48 H 1.09001 * 109.22804 * 167.44674 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 1.1611 -5.5398 -1.2825 13 6 0.7771 -7.0004 -1.0663 14 6 1.9722 -7.9619 -1.0696 15 7 1.1133 -8.8630 -1.8711 16 6 1.8691 -9.4637 -2.9782 17 6 2.8557 -10.4620 -2.4296 18 6 4.1531 -10.1349 -2.2772 19 7 5.0523 -11.0266 -1.7840 20 1 5.9772 -10.7498 -1.6902 21 6 4.7107 -12.2895 -1.4157 22 6 3.4427 -12.7301 -1.5227 23 6 2.4222 -11.8112 -2.0437 24 7 1.1608 -12.1867 -2.1664 25 6 0.3077 -7.7130 -2.3409 26 8 -0.0986 -7.1752 0.0466 27 6 0.5049 -6.8167 1.2929 28 6 1.1916 -5.4867 1.1730 29 8 1.4689 -4.8873 2.1902 30 1 -0.4850 0.8399 0.0004 31 1 0.6242 -2.5568 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.8720 -3.6044 0.8894 34 1 2.8720 -3.6044 -0.8905 35 1 0.3187 -5.0039 -1.7200 36 1 2.0156 -5.4850 -1.9569 37 1 2.8391 -7.5838 -1.6116 38 1 2.2230 -8.3549 -0.0843 39 1 1.1808 -9.9681 -3.6565 40 1 2.4045 -8.6829 -3.5185 41 1 4.4856 -9.1451 -2.5531 42 1 5.4710 -12.9528 -1.0307 43 1 3.1809 -13.7353 -1.2270 44 1 0.8939 -13.0823 -1.9064 45 1 -0.7644 -7.9083 -2.3660 46 1 0.6808 -7.2612 -3.2600 47 1 1.2351 -7.5763 1.5723 48 1 -0.2661 -6.7572 2.0611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272808055.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:51 Heat of formation + Delta-G solvation = 28.386706 kcal Electronic energy + Delta-G solvation = -30566.759570 eV Core-core repulsion = 26431.029298 eV Total energy + Delta-G solvation = -4135.730273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33014 -40.26125 -39.12594 -36.69480 -35.42203 -35.04271 -33.15239 -32.89919 -30.56029 -30.07897 -29.29851 -27.63361 -26.65896 -26.22880 -24.51314 -23.69901 -22.84684 -21.91158 -21.35021 -20.05435 -18.83454 -18.35458 -17.40161 -17.31924 -16.76047 -16.47767 -16.18277 -15.84773 -15.67427 -15.17904 -14.82950 -14.51503 -14.48714 -14.35243 -14.21795 -14.12530 -13.56310 -13.39867 -13.02893 -12.87123 -12.68545 -12.62331 -12.35037 -12.15659 -11.66742 -11.58507 -11.44387 -11.31304 -11.29172 -10.97985 -10.85753 -10.64107 -10.15679 -9.91663 -9.84174 -9.81106 -9.29084 -9.24571 -8.99760 -8.79776 -8.35686 -8.09093 -7.52442 -6.00322 -4.03675 1.16209 1.29121 2.70044 2.92554 3.19695 3.31016 3.37878 3.38943 3.42130 3.49407 3.84897 4.13716 4.30483 4.31722 4.35785 4.46306 4.53384 4.77595 4.84342 4.97006 5.08504 5.10419 5.13689 5.20376 5.29481 5.35672 5.39827 5.44069 5.46056 5.56971 5.62457 5.66886 5.76145 5.84011 5.97746 6.06199 6.22604 6.39613 6.48500 6.69580 6.72748 6.84976 6.88064 6.92144 6.97710 7.60597 7.72337 7.93948 8.00236 8.28821 8.35442 8.53676 9.03188 9.59995 11.11167 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.002270 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.546858 B =12331.781946 C =12672.718245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.114 3.886 11 N -0.596 5.596 12 C 0.100 3.900 13 C 0.073 3.927 14 C -0.018 4.018 15 N -0.447 5.447 16 C 0.089 3.911 17 C -0.148 4.148 18 C 0.108 3.892 19 N -0.616 5.616 20 H 0.414 0.586 21 C 0.123 3.877 22 C -0.270 4.270 23 C 0.262 3.738 24 N -0.715 5.715 25 C 0.025 3.975 26 O -0.334 6.334 27 C 0.052 3.948 28 C 0.480 3.520 29 O -0.539 6.539 30 H 0.260 0.740 31 H 0.015 0.985 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.134 0.866 44 H 0.323 0.677 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.931 -26.336 -7.741 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.024 4.024 10 C -0.006 4.006 11 N -0.329 5.329 12 C -0.024 4.024 13 C 0.032 3.968 14 C -0.147 4.147 15 N -0.169 5.169 16 C -0.039 4.039 17 C -0.157 4.157 18 C -0.019 4.019 19 N -0.223 5.223 20 H 0.248 0.752 21 C -0.004 4.004 22 C -0.299 4.299 23 C 0.077 3.923 24 N -0.331 5.331 25 C -0.104 4.104 26 O -0.251 6.251 27 C -0.027 4.027 28 C 0.267 3.733 29 O -0.417 6.417 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.152 0.848 44 H 0.136 0.864 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.408 -26.111 -7.300 28.698 hybrid contribution 1.986 0.807 0.072 2.145 sum 11.394 -25.304 -7.228 28.677 Atomic orbital electron populations 1.69983 1.06087 1.26551 1.50471 1.25014 0.94847 0.99295 0.95211 0.86506 0.80027 0.83685 0.77582 1.19726 1.21024 1.20958 1.21114 0.92976 0.90716 1.51073 0.92541 1.19356 0.94374 0.90968 0.97718 1.21937 0.95507 0.81806 1.01373 1.47673 1.56265 1.24222 1.04745 1.21984 1.01656 0.91959 0.86819 1.22903 0.91610 0.92644 0.89691 1.24524 0.95619 0.93604 1.00947 1.68794 1.13826 1.19045 1.15236 1.21130 0.94776 0.94639 0.93403 1.19948 0.92319 0.94637 1.08754 1.21275 0.89947 0.94107 0.96621 1.40805 1.11974 1.10953 1.58583 0.75229 1.21382 0.97775 0.85542 0.95697 1.22840 0.93436 1.01407 1.12231 1.20993 0.89568 0.91257 0.90476 1.70449 1.14623 1.22884 1.25108 1.23974 1.02237 0.89968 0.94212 1.88127 1.36913 1.86599 1.13482 1.22774 0.99537 0.92704 0.87690 1.20690 0.80413 0.88251 0.83959 1.90756 1.54217 1.62276 1.34486 0.92995 0.96643 0.95894 0.90730 0.91887 0.90108 0.89900 0.90537 0.89209 0.88757 0.93923 0.82712 0.82938 0.84801 0.86383 0.87625 0.89462 0.89859 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.36 5.29 -27.88 -0.15 0.22 16 10 C 0.11 2.41 5.21 -4.04 -0.02 2.38 16 11 N -0.60 -10.72 2.84 -174.67 -0.50 -11.21 16 12 C 0.10 1.37 5.88 -4.39 -0.03 1.35 16 13 C 0.07 0.89 1.16 -90.52 -0.10 0.79 16 14 C -0.02 -0.19 6.42 -2.99 -0.02 -0.20 16 15 N -0.45 -4.93 6.25 -242.41 -1.52 -6.45 16 16 C 0.09 0.82 4.75 -4.98 -0.02 0.80 16 17 C -0.15 -1.33 5.14 -102.40 -0.53 -1.86 16 18 C 0.11 0.62 10.58 -17.01 -0.18 0.44 16 19 N -0.62 -2.32 5.22 -13.14 -0.07 -2.39 16 20 H 0.41 0.19 8.88 -40.82 -0.36 -0.17 16 21 C 0.12 0.56 11.13 -17.01 -0.19 0.37 16 22 C -0.27 -2.06 10.20 -37.35 -0.38 -2.44 16 23 C 0.26 2.81 7.13 -80.73 -0.58 2.23 16 24 N -0.72 -9.08 13.68 34.43 0.47 -8.61 16 25 C 0.02 0.26 7.38 -2.99 -0.02 0.23 16 26 O -0.33 -4.92 10.66 -35.23 -0.38 -5.30 16 27 C 0.05 0.76 6.65 35.75 0.24 1.00 16 28 C 0.48 9.00 7.57 -11.72 -0.09 8.91 16 29 O -0.54 -12.41 16.33 5.56 0.09 -12.32 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.68 7.29 -51.93 -0.38 1.30 16 34 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 37 H 0.08 0.63 7.55 -51.93 -0.39 0.24 16 38 H 0.09 1.02 7.01 -51.93 -0.36 0.66 16 39 H 0.09 1.01 8.02 -51.93 -0.42 0.59 16 40 H 0.04 0.30 7.55 -51.93 -0.39 -0.09 16 41 H 0.16 0.49 8.01 -52.49 -0.42 0.07 16 42 H 0.15 0.16 8.06 -52.49 -0.42 -0.26 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.32 3.68 8.82 -40.82 -0.36 3.32 16 45 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.09 0.68 7.75 -51.93 -0.40 0.28 16 47 H 0.08 1.05 7.15 -51.92 -0.37 0.67 16 48 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -38.84 394.82 -9.88 -48.72 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.18 Total: 0.75 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.48 Total: 0.66 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.87 Total: -55.25 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.28 Total: -17.62 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.84 -9.88 -48.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272808055.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.108 kcal (2) G-P(sol) polarization free energy of solvation -38.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds