Wall clock time and date at job start Sat Apr 11 2020 07:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99804 * 2 1 4 4 H 1.48502 * 109.47269 * 269.99709 * 3 2 1 5 5 H 1.48500 * 109.47330 * 29.99702 * 3 2 1 6 6 H 1.48502 * 109.47003 * 150.00042 * 3 2 1 7 7 C 1.37881 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99602 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99906 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46906 * 179.97438 * 9 7 2 11 11 C 1.34960 * 125.97614 * 124.99994 * 10 9 7 12 12 C 1.35247 * 107.85557 * 179.74732 * 11 10 9 13 13 C 1.40398 * 107.86781 * 0.43149 * 12 11 10 14 14 N 1.40203 * 125.97290 * 179.82696 * 13 12 11 15 15 C 1.34777 * 119.99516 * 359.71443 * 14 13 12 16 16 O 1.21591 * 120.00287 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99604 * 180.02562 * 15 14 13 18 18 C 1.47718 * 134.43204 * 0.02562 * 17 15 14 19 19 C 1.53213 * 85.89841 * 204.11996 * 18 17 15 20 20 C 1.53442 * 115.02490 * 220.50755 * 19 18 17 21 21 C 1.54990 * 103.84987 * 227.69215 * 20 19 18 22 22 C 1.55054 * 102.31461 * 339.05287 * 21 20 19 23 23 O 1.42973 * 115.37298 * 93.47862 * 19 18 17 24 24 C 1.47708 * 134.43412 * 180.02562 * 17 15 14 25 25 H 1.09002 * 113.80965 * 41.63583 * 24 17 15 26 26 C 1.53002 * 113.91263 * 270.14005 * 24 17 15 27 27 C 1.52999 * 117.49782 * 152.30539 * 26 24 17 28 28 C 1.52998 * 117.49922 * 83.68150 * 26 24 17 29 29 N 1.31208 * 108.05642 * 359.56394 * 13 12 11 30 30 H 0.97004 * 119.99958 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47457 * 60.00168 * 9 7 2 32 32 H 1.08997 * 109.47600 * 300.00050 * 9 7 2 33 33 H 1.07993 * 126.07283 * 0.02562 * 11 10 9 34 34 H 1.07998 * 126.06552 * 180.25580 * 12 11 10 35 35 H 0.96990 * 119.99658 * 179.71385 * 14 13 12 36 36 H 1.08993 * 113.81129 * 89.87223 * 18 17 15 37 37 H 1.09004 * 113.80273 * 318.35898 * 18 17 15 38 38 H 1.09007 * 110.54988 * 109.09963 * 20 19 18 39 39 H 1.08993 * 110.54877 * 346.28693 * 20 19 18 40 40 H 1.09002 * 110.87097 * 97.31699 * 21 20 19 41 41 H 1.09003 * 110.87247 * 220.79173 * 21 20 19 42 42 H 1.09001 * 110.58845 * 155.22690 * 22 21 20 43 43 H 1.08994 * 110.58771 * 278.14611 * 22 21 20 44 44 H 1.08994 * 115.54885 * 298.01220 * 26 24 17 45 45 H 1.08998 * 117.50317 * 359.97438 * 27 26 24 46 46 H 1.09001 * 117.49977 * 145.02322 * 27 26 24 47 47 H 1.09002 * 117.49972 * 214.97973 * 28 26 24 48 48 H 1.09002 * 117.49686 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2421 -4.6224 0.8952 12 6 3.2572 -5.4456 0.5474 13 6 3.8693 -4.9142 -0.5990 14 7 4.9658 -5.4648 -1.2774 15 6 5.5302 -6.6050 -0.8323 16 8 5.0881 -7.1563 0.1572 17 7 6.5846 -7.1340 -1.4842 18 6 7.3602 -6.7483 -2.6807 19 6 7.7243 -8.2327 -2.7878 20 6 9.1801 -8.5173 -3.1802 21 6 9.0607 -9.5746 -4.3072 22 6 7.6480 -10.1637 -4.0597 23 8 6.8743 -9.0125 -3.6326 24 6 7.4269 -8.3314 -1.2880 25 1 6.8658 -9.2231 -1.0084 26 6 8.6488 -8.0912 -0.3990 27 6 9.1978 -9.2849 0.3849 28 6 8.4470 -8.1698 1.1155 29 7 3.2322 -3.8153 -0.9278 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8902 33 1 1.5776 -4.7525 1.7365 34 1 3.5474 -6.3497 1.0620 35 1 5.3181 -5.0252 -2.0669 36 1 8.2103 -6.1014 -2.4644 37 1 6.7461 -6.3854 -3.5049 38 1 9.7327 -8.9224 -2.3324 39 1 9.6596 -7.6125 -3.5536 40 1 9.1189 -9.1041 -5.2888 41 1 9.8261 -10.3434 -4.2011 42 1 7.2414 -10.5840 -4.9796 43 1 7.6796 -10.9180 -3.2736 44 1 9.3668 -7.3618 -0.7739 45 1 8.6882 -10.2413 0.2677 46 1 10.2772 -9.3411 0.5258 47 1 9.0325 -7.4923 1.7371 48 1 7.4438 -8.3930 1.4787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414402948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:39 Heat of formation + Delta-G solvation = 84.633838 kcal Electronic energy + Delta-G solvation = -30282.432657 eV Core-core repulsion = 26149.141443 eV Total energy + Delta-G solvation = -4133.291214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58724 -40.43715 -39.00734 -37.72816 -36.10111 -34.56378 -33.28272 -32.59076 -31.07539 -29.71708 -29.19172 -27.13095 -26.60288 -25.85097 -23.11654 -22.65232 -22.46648 -21.93697 -21.37405 -20.28455 -19.62538 -18.86441 -17.98663 -16.95597 -16.56277 -16.49034 -16.38607 -15.89961 -15.57320 -15.41687 -14.87766 -14.68206 -14.52378 -14.13275 -14.04782 -13.79884 -13.67629 -13.20097 -12.76599 -12.58756 -12.30240 -12.16944 -12.10425 -12.04092 -11.78728 -11.72576 -11.67098 -11.41822 -11.11622 -11.00462 -10.86229 -10.77891 -10.60627 -10.35596 -10.22065 -9.98031 -9.86067 -9.57596 -9.43742 -8.87295 -8.59827 -8.02839 -7.33930 -6.20810 -4.25577 2.13167 2.72949 3.11379 3.20494 3.25800 3.31293 3.34476 3.38471 3.58459 3.79228 3.91493 4.05644 4.19905 4.23146 4.36810 4.45407 4.52574 4.62695 4.70243 4.76500 4.80087 5.03326 5.11024 5.14101 5.17443 5.21242 5.27661 5.31595 5.34256 5.37309 5.44312 5.50185 5.64044 5.65420 5.67812 5.80145 5.89154 5.95653 6.38081 6.50630 6.60648 6.76427 6.89539 7.08764 7.23696 7.57744 7.73853 7.88159 8.03768 8.12833 8.68260 8.73138 8.85465 9.39690 10.87844 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002196 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.644462 B =12749.257380 C =13036.229589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.278 3.722 14 N -0.641 5.641 15 C 0.742 3.258 16 O -0.564 6.564 17 N -0.649 5.649 18 C 0.105 3.895 19 C 0.081 3.919 20 C -0.140 4.140 21 C -0.155 4.155 22 C 0.043 3.957 23 O -0.342 6.342 24 C 0.180 3.820 25 H 0.095 0.905 26 C -0.164 4.164 27 C -0.169 4.169 28 C -0.162 4.162 29 N -0.308 5.308 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.405 0.595 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.821 -21.386 -6.293 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.024 3.976 14 N -0.290 5.290 15 C 0.445 3.555 16 O -0.439 6.439 17 N -0.388 5.388 18 C -0.018 4.018 19 C 0.039 3.961 20 C -0.178 4.178 21 C -0.192 4.192 22 C -0.033 4.033 23 O -0.260 6.260 24 C 0.076 3.924 25 H 0.113 0.887 26 C -0.183 4.183 27 C -0.206 4.206 28 C -0.199 4.199 29 N -0.140 5.140 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.239 0.761 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.723 -20.449 -6.330 29.794 hybrid contribution 0.715 0.645 0.185 0.981 sum 21.438 -19.804 -6.144 29.825 Atomic orbital electron populations 1.69924 1.06023 1.27557 1.49912 1.24950 0.94986 0.99526 0.94687 0.86328 0.79658 0.82174 0.78327 1.20367 1.21002 1.19746 1.21266 0.93993 0.89417 1.51831 0.91333 1.19722 0.85623 0.81304 0.99214 1.49044 1.23291 1.19800 1.18186 1.22537 1.00359 0.90230 0.96787 1.21498 1.02080 1.06249 1.01914 1.18782 0.90549 0.93993 0.94288 1.41315 1.31479 1.24783 1.31429 1.15023 0.79116 0.79732 0.81676 1.90849 1.64353 1.62347 1.26358 1.48991 1.30340 1.28872 1.30605 1.23387 0.95456 0.94988 0.88012 1.23033 0.90045 0.92675 0.90299 1.22822 0.95191 1.00406 0.99395 1.23160 0.97708 0.98794 0.99568 1.23787 0.90499 0.88889 1.00141 1.88949 1.36414 1.35841 1.64804 1.22362 0.88379 0.88231 0.93462 0.88696 1.22318 0.99120 1.02669 0.94238 1.22961 1.00307 0.93529 1.03830 1.22941 1.02568 1.01323 0.93100 1.77322 1.03828 1.16462 1.16348 0.92370 0.93788 0.92553 0.81552 0.82276 0.76070 0.88414 0.89082 0.89099 0.89663 0.90299 0.89986 0.88568 0.91754 0.87135 0.88569 0.88391 0.88586 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.96 9.24 -34.44 -0.32 -15.28 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.26 6.77 6.26 -5.19 -0.03 6.73 16 10 N -0.32 -7.79 3.67 -62.56 -0.23 -8.02 16 11 C 0.05 1.07 11.44 -17.24 -0.20 0.87 16 12 C -0.29 -6.08 9.61 -39.83 -0.38 -6.46 16 13 C 0.28 6.00 8.11 -154.36 -1.25 4.75 16 14 N -0.64 -11.29 5.45 -15.50 -0.08 -11.37 16 15 C 0.74 12.58 8.73 -86.91 -0.76 11.82 16 16 O -0.56 -11.22 14.20 5.29 0.08 -11.14 16 17 N -0.65 -8.14 3.43 -180.22 -0.62 -8.76 16 18 C 0.10 0.92 7.60 -3.27 -0.02 0.89 16 19 C 0.08 0.66 1.47 -90.28 -0.13 0.52 16 20 C -0.14 -0.69 5.84 -25.45 -0.15 -0.83 16 21 C -0.15 -0.67 7.15 -24.59 -0.18 -0.85 16 22 C 0.04 0.27 7.77 38.24 0.30 0.56 16 23 O -0.34 -3.41 11.30 -35.23 -0.40 -3.81 16 24 C 0.18 1.78 4.27 -67.16 -0.29 1.50 16 25 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 26 C -0.16 -1.30 3.80 -90.62 -0.34 -1.64 16 27 C -0.17 -1.09 10.12 -26.73 -0.27 -1.36 16 28 C -0.16 -1.49 10.25 -26.73 -0.27 -1.76 16 29 N -0.31 -7.45 12.42 31.44 0.39 -7.06 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.17 2.87 8.06 -52.49 -0.42 2.44 16 34 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 35 H 0.40 6.07 8.43 -40.82 -0.34 5.73 16 36 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.38 6.47 -51.93 -0.34 0.04 16 39 H 0.08 0.33 7.93 -51.93 -0.41 -0.09 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.11 0.74 7.75 -51.93 -0.40 0.34 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -34.95 398.10 -10.81 -45.76 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.26 Total: 5.65 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -4.40 Total: 1.08 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.20 Total: -60.21 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.32 Total: -14.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.95 -10.81 -45.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414402948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.394 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds