Wall clock time and date at job start Sat Apr 11 2020 07:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99804 * 2 1 4 4 H 1.48502 * 109.47269 * 269.99709 * 3 2 1 5 5 H 1.48500 * 109.47330 * 29.99702 * 3 2 1 6 6 H 1.48502 * 109.47003 * 150.00042 * 3 2 1 7 7 C 1.37881 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99602 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99906 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46906 * 179.97438 * 9 7 2 11 11 C 1.34960 * 125.97614 * 124.99994 * 10 9 7 12 12 C 1.35247 * 107.85557 * 179.74732 * 11 10 9 13 13 C 1.40398 * 107.86781 * 0.43149 * 12 11 10 14 14 N 1.40203 * 125.97290 * 179.82696 * 13 12 11 15 15 C 1.34777 * 119.99516 * 359.71443 * 14 13 12 16 16 O 1.21591 * 120.00287 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99604 * 180.02562 * 15 14 13 18 18 C 1.47718 * 134.43204 * 0.02562 * 17 15 14 19 19 C 1.53213 * 85.89841 * 204.11996 * 18 17 15 20 20 C 1.53442 * 115.02490 * 220.50755 * 19 18 17 21 21 C 1.54990 * 103.84987 * 227.69215 * 20 19 18 22 22 C 1.55054 * 102.31461 * 339.05287 * 21 20 19 23 23 O 1.42973 * 115.37298 * 93.47862 * 19 18 17 24 24 C 1.47708 * 134.43412 * 180.02562 * 17 15 14 25 25 H 1.09002 * 113.80965 * 41.63583 * 24 17 15 26 26 C 1.53002 * 113.91263 * 270.14005 * 24 17 15 27 27 C 1.52999 * 117.49782 * 152.30539 * 26 24 17 28 28 C 1.52998 * 117.49922 * 83.68150 * 26 24 17 29 29 N 1.31208 * 108.05642 * 359.56394 * 13 12 11 30 30 H 0.97004 * 119.99958 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47457 * 60.00168 * 9 7 2 32 32 H 1.08997 * 109.47600 * 300.00050 * 9 7 2 33 33 H 1.07993 * 126.07283 * 0.02562 * 11 10 9 34 34 H 1.07998 * 126.06552 * 180.25580 * 12 11 10 35 35 H 0.96990 * 119.99658 * 179.71385 * 14 13 12 36 36 H 1.08993 * 113.81129 * 89.87223 * 18 17 15 37 37 H 1.09004 * 113.80273 * 318.35898 * 18 17 15 38 38 H 1.09007 * 110.54988 * 109.09963 * 20 19 18 39 39 H 1.08993 * 110.54877 * 346.28693 * 20 19 18 40 40 H 1.09002 * 110.87097 * 97.31699 * 21 20 19 41 41 H 1.09003 * 110.87247 * 220.79173 * 21 20 19 42 42 H 1.09001 * 110.58845 * 155.22690 * 22 21 20 43 43 H 1.08994 * 110.58771 * 278.14611 * 22 21 20 44 44 H 1.08994 * 115.54885 * 298.01220 * 26 24 17 45 45 H 1.08998 * 117.50317 * 359.97438 * 27 26 24 46 46 H 1.09001 * 117.49977 * 145.02322 * 27 26 24 47 47 H 1.09002 * 117.49972 * 214.97973 * 28 26 24 48 48 H 1.09002 * 117.49686 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2421 -4.6224 0.8952 12 6 3.2572 -5.4456 0.5474 13 6 3.8693 -4.9142 -0.5990 14 7 4.9658 -5.4648 -1.2774 15 6 5.5302 -6.6050 -0.8323 16 8 5.0881 -7.1563 0.1572 17 7 6.5846 -7.1340 -1.4842 18 6 7.3602 -6.7483 -2.6807 19 6 7.7243 -8.2327 -2.7878 20 6 9.1801 -8.5173 -3.1802 21 6 9.0607 -9.5746 -4.3072 22 6 7.6480 -10.1637 -4.0597 23 8 6.8743 -9.0125 -3.6326 24 6 7.4269 -8.3314 -1.2880 25 1 6.8658 -9.2231 -1.0084 26 6 8.6488 -8.0912 -0.3990 27 6 9.1978 -9.2849 0.3849 28 6 8.4470 -8.1698 1.1155 29 7 3.2322 -3.8153 -0.9278 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8902 33 1 1.5776 -4.7525 1.7365 34 1 3.5474 -6.3497 1.0620 35 1 5.3181 -5.0252 -2.0669 36 1 8.2103 -6.1014 -2.4644 37 1 6.7461 -6.3854 -3.5049 38 1 9.7327 -8.9224 -2.3324 39 1 9.6596 -7.6125 -3.5536 40 1 9.1189 -9.1041 -5.2888 41 1 9.8261 -10.3434 -4.2011 42 1 7.2414 -10.5840 -4.9796 43 1 7.6796 -10.9180 -3.2736 44 1 9.3668 -7.3618 -0.7739 45 1 8.6882 -10.2413 0.2677 46 1 10.2772 -9.3411 0.5258 47 1 9.0325 -7.4923 1.7371 48 1 7.4438 -8.3930 1.4787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414402948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:38 Heat of formation + Delta-G solvation = 62.467175 kcal Electronic energy + Delta-G solvation = -30283.393875 eV Core-core repulsion = 26149.141443 eV Total energy + Delta-G solvation = -4134.252432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48956 -41.99143 -40.23948 -38.45781 -36.88746 -36.19419 -35.24965 -33.11930 -32.83449 -31.02368 -30.61530 -28.56764 -27.72790 -26.71761 -24.94160 -23.43279 -23.13501 -22.72358 -22.41106 -21.83205 -20.97493 -19.79778 -19.05568 -18.70171 -18.20504 -17.56940 -17.27379 -16.90883 -16.79050 -16.37911 -16.19767 -15.95368 -15.61168 -15.54443 -15.16563 -14.77712 -14.52375 -14.30013 -14.26090 -13.96328 -13.83016 -13.66381 -13.20061 -12.96273 -12.74862 -12.70889 -12.53339 -12.40694 -12.30642 -12.20963 -12.08072 -12.03183 -11.64281 -11.55592 -11.41558 -11.36248 -11.25264 -10.96905 -10.72931 -10.52456 -9.95259 -9.72660 -9.06918 -8.33435 -6.47747 0.92263 1.04792 1.37394 1.38381 1.49925 1.65957 1.88947 2.33728 2.35350 2.58006 2.76424 2.94417 2.97979 3.14595 3.53843 3.75778 3.82611 3.91977 4.02199 4.05996 4.09825 4.16589 4.23342 4.29814 4.39423 4.45383 4.53799 4.63414 4.68577 4.80020 4.80579 4.82603 4.88485 4.91373 4.91888 5.00616 5.01968 5.06186 5.16498 5.20400 5.21921 5.26165 5.29907 5.55823 5.77501 5.89716 5.95879 5.99415 6.27155 6.61867 6.69884 7.07472 7.21990 7.36713 8.74214 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002196 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.644462 B =12749.257380 C =13036.229589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.273 3.727 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.294 4.294 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.734 3.266 16 O -0.602 6.602 17 N -0.651 5.651 18 C 0.100 3.900 19 C 0.089 3.911 20 C -0.133 4.133 21 C -0.147 4.147 22 C 0.033 3.967 23 O -0.378 6.378 24 C 0.173 3.827 25 H 0.070 0.930 26 C -0.159 4.159 27 C -0.139 4.139 28 C -0.190 4.190 29 N -0.347 5.347 30 H 0.273 0.727 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.203 0.797 34 H 0.163 0.837 35 H 0.416 0.584 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.134 0.866 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.101 0.899 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.049 -21.690 -7.070 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.326 4.326 13 C 0.029 3.971 14 N -0.287 5.287 15 C 0.437 3.563 16 O -0.480 6.480 17 N -0.389 5.389 18 C -0.022 4.022 19 C 0.048 3.952 20 C -0.171 4.171 21 C -0.184 4.184 22 C -0.043 4.043 23 O -0.297 6.297 24 C 0.070 3.930 25 H 0.089 0.911 26 C -0.178 4.178 27 C -0.177 4.177 28 C -0.227 4.227 29 N -0.178 5.178 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.220 0.780 34 H 0.180 0.820 35 H 0.252 0.748 36 H 0.148 0.852 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.152 0.848 45 H 0.116 0.884 46 H 0.144 0.856 47 H 0.119 0.881 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.006 -20.795 -7.152 32.556 hybrid contribution -0.267 0.559 0.396 0.735 sum 23.739 -20.237 -6.755 31.917 Atomic orbital electron populations 1.70001 1.07217 1.28790 1.49917 1.25763 0.95882 1.02774 0.93864 0.85325 0.78338 0.78022 0.78587 1.19725 1.19573 1.19753 1.21388 0.93345 0.90955 1.52868 0.93023 1.19354 0.85642 0.81471 0.98128 1.48844 1.23843 1.20392 1.19512 1.23136 1.00347 0.88747 0.96739 1.21642 1.02354 1.06445 1.02112 1.19082 0.90729 0.93077 0.94176 1.41336 1.30578 1.25136 1.31600 1.15275 0.80087 0.79331 0.81637 1.90803 1.65838 1.63241 1.28159 1.49223 1.29306 1.29322 1.31038 1.23795 0.95731 0.96400 0.86242 1.22995 0.92014 0.91717 0.88488 1.22859 0.92535 1.01583 1.00103 1.23153 0.96694 0.99034 0.99528 1.24020 0.91616 0.88110 1.00519 1.88919 1.38416 1.37241 1.65107 1.22656 0.88341 0.86297 0.95697 0.91129 1.22357 0.98519 1.04279 0.92676 1.23061 1.01495 0.92562 1.00571 1.22866 1.01526 1.04009 0.94336 1.77242 1.04928 1.18080 1.17524 0.91808 0.96088 0.92256 0.78029 0.82010 0.74762 0.85210 0.89102 0.87729 0.87714 0.89934 0.87893 0.87979 0.91419 0.84819 0.88426 0.85566 0.88082 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 2 C 0.02 0.98 5.46 84.66 0.46 1.45 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -31.72 9.24 25.60 0.24 -31.48 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.27 14.67 6.26 85.63 0.54 15.20 16 10 N -0.34 -17.09 3.67 -351.85 -1.29 -18.38 16 11 C 0.06 2.51 11.44 83.52 0.96 3.46 16 12 C -0.29 -12.77 9.61 22.11 0.21 -12.55 16 13 C 0.28 12.61 8.11 133.31 1.08 13.69 16 14 N -0.64 -22.85 5.45 -321.22 -1.75 -24.60 16 15 C 0.73 25.52 8.73 179.05 1.56 27.09 16 16 O -0.60 -24.98 14.20 -4.00 -0.06 -25.04 16 17 N -0.65 -16.23 3.43 -847.79 -2.91 -19.14 16 18 C 0.10 1.57 7.60 86.21 0.65 2.22 16 19 C 0.09 1.28 1.47 -10.46 -0.02 1.27 16 20 C -0.13 -0.80 5.84 31.42 0.18 -0.61 16 21 C -0.15 -0.78 7.15 31.98 0.23 -0.55 16 22 C 0.03 0.35 7.77 72.69 0.56 0.92 16 23 O -0.38 -7.24 11.30 -148.98 -1.68 -8.92 16 24 C 0.17 3.32 4.27 44.83 0.19 3.51 16 25 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 26 C -0.16 -2.20 3.80 -10.79 -0.04 -2.24 16 27 C -0.14 -1.46 10.12 30.59 0.31 -1.15 16 28 C -0.19 -3.43 10.25 30.59 0.31 -3.12 16 29 N -0.35 -17.23 12.42 -54.43 -0.68 -17.90 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 3.11 8.07 -2.39 -0.02 3.09 16 33 H 0.20 6.80 8.06 -2.91 -0.02 6.78 16 34 H 0.16 6.98 5.91 -2.91 -0.02 6.96 16 35 H 0.42 12.61 8.43 -92.72 -0.78 11.83 16 36 H 0.13 1.23 8.10 -2.39 -0.02 1.21 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.10 0.39 6.47 -2.38 -0.02 0.37 16 39 H 0.10 0.29 7.93 -2.39 -0.02 0.27 16 40 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.13 1.27 7.75 -2.39 -0.02 1.25 16 45 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -78.76 398.10 1.58 -77.18 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.20 Total: 26.11 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 7.44 Total: 17.09 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -6.34 Total: -132.81 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.74 Total: -33.96 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -78.76 1.58 -77.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414402948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.650 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds