Wall clock time and date at job start Sat Apr 11 2020 07:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38024 * 120.00089 * 2 1 4 4 C 1.38210 * 120.22064 * 180.27893 * 3 2 1 5 5 C 1.38994 * 120.22103 * 359.76601 * 4 3 2 6 6 N 1.39975 * 119.99240 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00240 * 326.17376 * 6 5 4 8 8 O 1.21583 * 120.00463 * 355.07798 * 7 6 5 9 9 N 1.34783 * 120.00196 * 175.07787 * 7 6 5 10 10 C 1.47072 * 120.88270 * 185.36118 * 9 7 6 11 11 C 1.53697 * 108.27940 * 128.75611 * 10 9 7 12 12 N 1.46900 * 109.25416 * 54.07738 * 11 10 9 13 13 C 1.46898 * 110.99809 * 172.61102 * 12 11 10 14 14 C 1.50697 * 109.47539 * 294.30303 * 13 12 11 15 15 H 1.08012 * 119.99673 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00748 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99444 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00378 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46867 * 59.99481 * 18 16 14 20 20 H 1.48491 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46825 * 300.00027 * 18 16 14 22 22 C 1.46894 * 111.27468 * 296.75884 * 12 11 10 23 23 C 1.47080 * 120.87654 * 5.63836 * 9 7 6 24 24 C 1.38583 * 120.00250 * 359.95036 * 5 4 3 25 25 C 1.39499 * 119.78085 * 0.02796 * 24 5 4 26 26 C 1.47860 * 120.10945 * 179.97438 * 25 24 5 27 27 N 1.34778 * 120.00083 * 353.86909 * 26 25 24 28 28 O 1.21552 * 119.99971 * 173.59768 * 26 25 24 29 29 H 1.09002 * 109.46924 * 263.30017 * 1 2 3 30 30 H 1.08994 * 109.47023 * 23.30170 * 1 2 3 31 31 H 1.08995 * 109.47127 * 143.30817 * 1 2 3 32 32 H 1.07994 * 119.88924 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.88954 * 179.73743 * 4 3 2 34 34 H 0.97002 * 119.99455 * 146.17863 * 6 5 4 35 35 H 1.09007 * 109.62552 * 248.51981 * 10 9 7 36 36 H 1.08998 * 109.63365 * 9.10418 * 10 9 7 37 37 H 1.09003 * 109.64540 * 294.08111 * 11 10 9 38 38 H 1.08997 * 109.42388 * 173.94647 * 11 10 9 39 39 H 1.08996 * 109.47459 * 54.30403 * 13 12 11 40 40 H 1.09004 * 109.47603 * 174.30579 * 13 12 11 41 41 H 0.97003 * 120.00187 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.49482 * 303.14638 * 22 12 11 43 43 H 1.09003 * 109.49696 * 183.06534 * 22 12 11 44 44 H 1.08996 * 109.63232 * 350.89653 * 23 9 7 45 45 H 1.09007 * 109.62879 * 111.48008 * 23 9 7 46 46 H 1.08005 * 120.10985 * 180.02562 * 24 5 4 47 47 H 0.96995 * 120.00249 * 0.02562 * 27 26 25 48 48 H 0.96997 * 119.99518 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1953 0.0000 4 6 3.5793 1.2006 -0.0058 5 6 4.2835 0.0023 -0.0068 6 7 5.6832 0.0132 -0.0132 7 6 6.3465 0.9868 -0.6678 8 8 5.7326 1.8037 -1.3267 9 7 7.6905 1.0551 -0.5921 10 6 8.4250 2.1745 -1.2006 11 6 9.3699 2.7637 -0.1412 12 7 10.2131 1.6922 0.4055 13 6 11.2488 2.2382 1.2927 14 6 12.2046 3.0821 0.4895 15 1 12.0571 3.2014 -0.5739 16 6 13.2673 3.7021 1.1118 17 7 13.4466 3.5573 2.4065 18 14 14.4516 4.7488 0.1162 19 1 13.7089 5.8650 -0.5225 20 1 15.4987 5.3006 1.0129 21 1 15.0882 3.9133 -0.9335 22 6 9.4057 0.6801 1.0993 23 6 8.4618 0.0087 0.0960 24 6 3.5999 -1.2032 -0.0009 25 6 2.2049 -1.2087 0.0054 26 6 1.4682 -2.4907 0.0112 27 7 2.1381 -3.6534 -0.1143 28 8 0.2590 -2.4961 0.1340 29 1 -0.3633 -0.1199 1.0207 30 1 -0.3633 0.9438 -0.4065 31 1 -0.3633 -0.8240 -0.6140 32 1 1.6554 2.1295 0.0004 33 1 4.1138 2.1390 -0.0101 34 1 6.1757 -0.6800 0.4534 35 1 9.0033 1.8137 -2.0513 36 1 7.7209 2.9384 -1.5304 37 1 8.7855 3.2123 0.6622 38 1 10.0008 3.5243 -0.6010 39 1 10.7812 2.8518 2.0626 40 1 11.7938 1.4192 1.7622 41 1 14.1944 3.9931 2.8444 42 1 8.8208 1.1577 1.8855 43 1 10.0625 -0.0704 1.5391 44 1 7.7819 -0.6601 0.6238 45 1 9.0435 -0.5562 -0.6324 46 1 4.1454 -2.1354 -0.0012 47 1 3.1035 -3.6493 -0.2080 48 1 1.6548 -4.4944 -0.1102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465536822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:46 Heat of formation + Delta-G solvation = -16.427698 kcal Electronic energy + Delta-G solvation = -29829.378299 eV Core-core repulsion = 25691.704728 eV Total energy + Delta-G solvation = -4137.673571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12473 -40.25541 -38.65624 -37.59372 -35.26830 -34.58405 -34.32200 -32.51497 -31.60798 -31.23126 -30.68658 -28.39364 -26.74068 -25.49991 -24.31532 -23.44396 -22.48649 -22.05563 -21.43194 -20.42271 -19.50885 -18.70857 -18.00933 -17.18979 -16.53465 -16.33256 -16.04527 -15.61572 -15.56127 -15.26120 -14.84152 -14.76312 -14.58346 -14.17082 -14.07392 -13.95014 -13.81083 -13.64731 -13.54978 -13.18397 -12.48737 -12.38918 -12.22858 -12.15834 -12.02971 -11.69823 -11.37619 -11.26958 -10.91959 -10.85229 -10.69073 -10.60589 -10.47635 -10.26270 -10.06168 -9.95767 -9.92331 -9.36192 -9.26183 -8.68476 -8.51512 -8.18694 -7.43008 -6.11458 -4.13677 0.58298 1.00235 2.37614 2.56544 3.02368 3.13625 3.28448 3.33040 3.35448 3.57147 3.63218 4.33501 4.41063 4.41386 4.63170 4.70599 4.96771 5.01224 5.04185 5.14677 5.18459 5.25536 5.30585 5.41155 5.50589 5.55714 5.62393 5.69379 5.75580 5.80963 5.90130 5.93363 6.07200 6.10690 6.18510 6.27026 6.33161 6.42300 6.44291 6.53532 6.71170 6.80739 6.93801 7.13132 7.19992 7.65888 7.70134 7.88026 7.92576 8.03954 8.37039 8.39808 8.93081 9.51158 10.99237 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.001892 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.172659 B =14795.280599 C =15246.889470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.110 4.110 4 C -0.085 4.085 5 C 0.161 3.839 6 N -0.690 5.690 7 C 0.706 3.294 8 O -0.577 6.577 9 N -0.619 5.619 10 C 0.132 3.868 11 C 0.050 3.950 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.512 4.512 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.040 3.960 23 C 0.116 3.884 24 C -0.115 4.115 25 C -0.129 4.129 26 C 0.566 3.434 27 N -0.853 5.853 28 O -0.534 6.534 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.406 0.594 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.099 0.901 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.028 0.972 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.127 0.873 47 H 0.400 0.600 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.500 -12.793 -3.571 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.043 4.043 3 C -0.128 4.128 4 C -0.106 4.106 5 C 0.066 3.934 6 N -0.340 5.340 7 C 0.408 3.592 8 O -0.455 6.455 9 N -0.355 5.355 10 C 0.010 3.990 11 C -0.079 4.079 12 N -0.260 5.260 13 C 0.070 3.930 14 C -0.550 4.550 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.090 4.090 23 C -0.008 4.008 24 C -0.136 4.136 25 C -0.133 4.133 26 C 0.353 3.647 27 N -0.416 5.416 28 O -0.413 6.413 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.151 0.849 33 H 0.161 0.839 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.044 0.956 38 H 0.117 0.883 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.145 0.855 47 H 0.230 0.770 48 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -21.237 -12.152 -4.203 24.826 hybrid contribution 1.230 0.154 0.577 1.367 sum -20.007 -11.998 -3.626 23.608 Atomic orbital electron populations 1.21030 0.90008 1.02882 1.03419 1.20003 0.96854 0.91392 0.96009 1.20978 0.93480 0.97692 1.00687 1.21476 0.94072 0.98248 0.96774 1.17313 0.81933 0.93602 1.00591 1.42832 1.04392 1.30901 1.55887 1.15794 0.81931 0.81574 0.79861 1.90919 1.66694 1.42619 1.45244 1.47465 1.03339 1.26463 1.58217 1.21919 0.93660 0.87584 0.95853 1.22469 0.94355 0.94619 0.96476 1.62090 1.12587 1.13462 1.37846 1.19723 0.88236 0.94535 0.90548 1.21090 1.09880 1.29008 0.95025 0.91805 1.24994 0.97835 0.96771 0.94953 1.69940 1.30673 1.44160 1.08906 0.86538 0.80490 0.80478 0.79785 1.20209 1.21361 1.20118 1.22385 0.95396 0.96873 0.94323 1.21845 0.93731 0.89496 0.95699 1.20874 0.93049 0.96711 1.03015 1.19366 0.92509 0.93129 1.08251 1.18239 0.86875 0.84132 0.75412 1.43785 1.11966 1.08533 1.77362 1.90776 1.13820 1.87247 1.49412 0.90829 0.92379 0.89049 0.84897 0.83949 0.75532 0.90802 0.89169 0.95624 0.88277 0.99081 0.95029 0.92779 0.95429 0.89923 0.91339 0.90188 0.85475 0.77008 0.76477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.70 36.01 0.31 -0.79 16 2 C -0.04 -0.42 5.91 -104.20 -0.62 -1.03 16 3 C -0.11 -1.12 9.65 -39.67 -0.38 -1.50 16 4 C -0.09 -1.00 8.65 -39.31 -0.34 -1.34 16 5 C 0.16 1.72 6.27 -83.73 -0.52 1.19 16 6 N -0.69 -7.22 5.26 -14.25 -0.07 -7.30 16 7 C 0.71 9.81 8.05 -86.92 -0.70 9.11 16 8 O -0.58 -9.76 13.52 5.29 0.07 -9.69 16 9 N -0.62 -8.44 3.00 -177.91 -0.53 -8.98 16 10 C 0.13 2.00 6.61 -3.37 -0.02 1.98 16 11 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 12 N -0.53 -10.37 4.62 -235.47 -1.09 -11.46 16 13 C 0.19 4.73 4.72 -4.98 -0.02 4.70 16 14 C -0.51 -13.59 8.41 -34.44 -0.29 -13.88 16 15 H 0.06 1.66 7.13 -52.48 -0.37 1.29 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -25.74 13.29 55.43 0.74 -25.01 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 23 C 0.12 1.34 6.60 -3.60 -0.02 1.32 16 24 C -0.11 -0.97 9.44 -38.98 -0.37 -1.34 16 25 C -0.13 -1.24 5.87 -104.99 -0.62 -1.86 16 26 C 0.57 5.32 7.97 -12.32 -0.10 5.22 16 27 N -0.85 -4.55 8.82 30.53 0.27 -4.28 16 28 O -0.53 -6.59 14.19 5.32 0.08 -6.51 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 31 H 0.09 0.98 5.89 -51.93 -0.31 0.68 16 32 H 0.13 1.10 8.05 -52.49 -0.42 0.67 16 33 H 0.14 1.89 6.43 -52.49 -0.34 1.55 16 34 H 0.41 3.09 6.31 -40.82 -0.26 2.83 16 35 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.09 1.37 7.10 -51.93 -0.37 1.00 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 40 H 0.03 0.82 7.97 -51.93 -0.41 0.40 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 1.20 7.99 -51.93 -0.41 0.78 16 44 H 0.07 0.55 5.63 -51.93 -0.29 0.25 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.13 0.64 6.45 -52.48 -0.34 0.30 16 47 H 0.40 1.20 6.90 -40.82 -0.28 0.91 16 48 H 0.40 1.62 8.93 -40.82 -0.36 1.25 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -33.57 383.57 -10.22 -43.79 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.61 Total: 3.10 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -3.83 Total: 4.69 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.69 Total: -57.02 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.15 Total: -16.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.57 -10.22 -43.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465536822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.358 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds