Wall clock time and date at job start Sat Apr 11 2020 07:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38024 * 120.00089 * 2 1 4 4 C 1.38210 * 120.22064 * 180.27893 * 3 2 1 5 5 C 1.38994 * 120.22103 * 359.76601 * 4 3 2 6 6 N 1.39975 * 119.99240 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00240 * 326.17376 * 6 5 4 8 8 O 1.21583 * 120.00463 * 355.07798 * 7 6 5 9 9 N 1.34783 * 120.00196 * 175.07787 * 7 6 5 10 10 C 1.47072 * 120.88270 * 185.36118 * 9 7 6 11 11 C 1.53697 * 108.27940 * 128.75611 * 10 9 7 12 12 N 1.46900 * 109.25416 * 54.07738 * 11 10 9 13 13 C 1.46898 * 110.99809 * 172.61102 * 12 11 10 14 14 C 1.50697 * 109.47539 * 294.30303 * 13 12 11 15 15 H 1.08012 * 119.99673 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00748 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99444 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00378 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46867 * 59.99481 * 18 16 14 20 20 H 1.48491 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46825 * 300.00027 * 18 16 14 22 22 C 1.46894 * 111.27468 * 296.75884 * 12 11 10 23 23 C 1.47080 * 120.87654 * 5.63836 * 9 7 6 24 24 C 1.38583 * 120.00250 * 359.95036 * 5 4 3 25 25 C 1.39499 * 119.78085 * 0.02796 * 24 5 4 26 26 C 1.47860 * 120.10945 * 179.97438 * 25 24 5 27 27 N 1.34778 * 120.00083 * 353.86909 * 26 25 24 28 28 O 1.21552 * 119.99971 * 173.59768 * 26 25 24 29 29 H 1.09002 * 109.46924 * 263.30017 * 1 2 3 30 30 H 1.08994 * 109.47023 * 23.30170 * 1 2 3 31 31 H 1.08995 * 109.47127 * 143.30817 * 1 2 3 32 32 H 1.07994 * 119.88924 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.88954 * 179.73743 * 4 3 2 34 34 H 0.97002 * 119.99455 * 146.17863 * 6 5 4 35 35 H 1.09007 * 109.62552 * 248.51981 * 10 9 7 36 36 H 1.08998 * 109.63365 * 9.10418 * 10 9 7 37 37 H 1.09003 * 109.64540 * 294.08111 * 11 10 9 38 38 H 1.08997 * 109.42388 * 173.94647 * 11 10 9 39 39 H 1.08996 * 109.47459 * 54.30403 * 13 12 11 40 40 H 1.09004 * 109.47603 * 174.30579 * 13 12 11 41 41 H 0.97003 * 120.00187 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.49482 * 303.14638 * 22 12 11 43 43 H 1.09003 * 109.49696 * 183.06534 * 22 12 11 44 44 H 1.08996 * 109.63232 * 350.89653 * 23 9 7 45 45 H 1.09007 * 109.62879 * 111.48008 * 23 9 7 46 46 H 1.08005 * 120.10985 * 180.02562 * 24 5 4 47 47 H 0.96995 * 120.00249 * 0.02562 * 27 26 25 48 48 H 0.96997 * 119.99518 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1953 0.0000 4 6 3.5793 1.2006 -0.0058 5 6 4.2835 0.0023 -0.0068 6 7 5.6832 0.0132 -0.0132 7 6 6.3465 0.9868 -0.6678 8 8 5.7326 1.8037 -1.3267 9 7 7.6905 1.0551 -0.5921 10 6 8.4250 2.1745 -1.2006 11 6 9.3699 2.7637 -0.1412 12 7 10.2131 1.6922 0.4055 13 6 11.2488 2.2382 1.2927 14 6 12.2046 3.0821 0.4895 15 1 12.0571 3.2014 -0.5739 16 6 13.2673 3.7021 1.1118 17 7 13.4466 3.5573 2.4065 18 14 14.4516 4.7488 0.1162 19 1 13.7089 5.8650 -0.5225 20 1 15.4987 5.3006 1.0129 21 1 15.0882 3.9133 -0.9335 22 6 9.4057 0.6801 1.0993 23 6 8.4618 0.0087 0.0960 24 6 3.5999 -1.2032 -0.0009 25 6 2.2049 -1.2087 0.0054 26 6 1.4682 -2.4907 0.0112 27 7 2.1381 -3.6534 -0.1143 28 8 0.2590 -2.4961 0.1340 29 1 -0.3633 -0.1199 1.0207 30 1 -0.3633 0.9438 -0.4065 31 1 -0.3633 -0.8240 -0.6140 32 1 1.6554 2.1295 0.0004 33 1 4.1138 2.1390 -0.0101 34 1 6.1757 -0.6800 0.4534 35 1 9.0033 1.8137 -2.0513 36 1 7.7209 2.9384 -1.5304 37 1 8.7855 3.2123 0.6622 38 1 10.0008 3.5243 -0.6010 39 1 10.7812 2.8518 2.0626 40 1 11.7938 1.4192 1.7622 41 1 14.1944 3.9931 2.8444 42 1 8.8208 1.1577 1.8855 43 1 10.0625 -0.0704 1.5391 44 1 7.7819 -0.6601 0.6238 45 1 9.0435 -0.5562 -0.6324 46 1 4.1454 -2.1354 -0.0012 47 1 3.1035 -3.6493 -0.2080 48 1 1.6548 -4.4944 -0.1102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465536822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:46 Heat of formation + Delta-G solvation = -41.566807 kcal Electronic energy + Delta-G solvation = -29830.468413 eV Core-core repulsion = 25691.704728 eV Total energy + Delta-G solvation = -4138.763684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06090 -41.10744 -39.64892 -38.74492 -36.20893 -36.01858 -34.98851 -34.40214 -32.57826 -31.97735 -31.80683 -29.97915 -27.78970 -26.95543 -25.08323 -24.70285 -24.02168 -22.88113 -22.62580 -21.42857 -20.55652 -19.61766 -18.95139 -18.45351 -17.82713 -17.31342 -16.98795 -16.84218 -16.43710 -16.37574 -16.06386 -15.98232 -15.68657 -15.43359 -15.33124 -15.11945 -14.89059 -14.57773 -14.51212 -14.21356 -14.03829 -13.56972 -13.35554 -13.08398 -12.97414 -12.95102 -12.76807 -12.56394 -12.46878 -12.35133 -12.28988 -12.17759 -11.74258 -11.45155 -11.32755 -11.20433 -10.78189 -10.62720 -10.60567 -10.02193 -9.84629 -9.10634 -8.97937 -8.20284 -6.29838 -0.18499 0.22704 1.38905 1.43477 1.45433 1.53239 1.76297 2.04272 2.40920 2.53399 2.69170 2.81848 3.12184 3.22668 3.74906 3.78956 3.90458 3.96334 4.03052 4.09919 4.21656 4.25118 4.33195 4.36390 4.44255 4.58819 4.69711 4.71732 4.83866 4.84741 4.88019 4.95255 5.00119 5.02036 5.11470 5.17987 5.23675 5.33045 5.38564 5.41420 5.57269 5.63944 5.81802 5.90293 5.92836 6.04011 6.24887 6.42773 6.58469 6.74571 6.85666 7.30976 7.34104 7.39936 8.90374 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.001892 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.172659 B =14795.280599 C =15246.889470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.112 4.112 4 C -0.104 4.104 5 C 0.145 3.855 6 N -0.673 5.673 7 C 0.705 3.295 8 O -0.611 6.611 9 N -0.621 5.621 10 C 0.146 3.854 11 C 0.056 3.944 12 N -0.538 5.538 13 C 0.209 3.791 14 C -0.523 4.523 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.036 3.964 23 C 0.124 3.876 24 C -0.095 4.095 25 C -0.135 4.135 26 C 0.564 3.436 27 N -0.830 5.830 28 O -0.570 6.570 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.422 0.578 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.010 0.990 38 H 0.080 0.920 39 H -0.042 1.042 40 H 0.012 0.988 41 H 0.264 0.736 42 H 0.019 0.981 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.167 0.833 47 H 0.415 0.585 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.794 -14.887 -4.606 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.131 4.131 4 C -0.124 4.124 5 C 0.050 3.950 6 N -0.324 5.324 7 C 0.408 3.592 8 O -0.491 6.491 9 N -0.357 5.357 10 C 0.022 3.978 11 C -0.073 4.073 12 N -0.262 5.262 13 C 0.083 3.917 14 C -0.562 4.562 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.093 4.093 23 C 0.001 3.999 24 C -0.116 4.116 25 C -0.139 4.139 26 C 0.350 3.650 27 N -0.395 5.395 28 O -0.451 6.451 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.263 0.737 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.028 0.972 38 H 0.098 0.902 39 H -0.024 1.024 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.109 0.891 44 H 0.131 0.869 45 H 0.111 0.889 46 H 0.185 0.815 47 H 0.247 0.753 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -21.522 -14.322 -5.234 26.376 hybrid contribution 1.247 0.749 0.940 1.732 sum -20.275 -13.573 -4.294 24.774 Atomic orbital electron populations 1.20968 0.89678 1.03087 1.03102 1.20201 0.97300 0.91793 0.96048 1.21075 0.93059 0.98425 1.00510 1.21433 0.94723 0.98062 0.98228 1.17445 0.81889 0.94049 1.01637 1.42560 1.04345 1.30349 1.55137 1.15884 0.81739 0.81800 0.79800 1.90905 1.67312 1.44071 1.46769 1.47434 1.03511 1.26446 1.58336 1.21644 0.93047 0.88259 0.94818 1.22383 0.94128 0.94201 0.96634 1.61998 1.13138 1.14025 1.37078 1.19363 0.89103 0.93098 0.90159 1.21445 1.10273 1.29127 0.95319 0.91584 1.25886 0.99714 0.98077 0.95952 1.70067 1.31440 1.45349 1.10566 0.85469 0.78154 0.78876 0.78330 1.19422 1.21188 1.19156 1.22546 0.95717 0.95914 0.95166 1.21947 0.93787 0.88930 0.95200 1.21127 0.92521 0.97414 1.00572 1.19555 0.93152 0.93235 1.07989 1.18244 0.86479 0.84878 0.75387 1.43602 1.12747 1.07769 1.75394 1.90770 1.15261 1.87732 1.51308 0.91049 0.91032 0.90291 0.83710 0.86137 0.73662 0.89938 0.89387 0.97152 0.90192 1.02446 0.97022 0.92752 0.96266 0.89069 0.86891 0.88868 0.81525 0.75311 0.75379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 8.70 71.24 0.62 -1.43 16 2 C -0.05 -1.01 5.91 -19.59 -0.12 -1.12 16 3 C -0.11 -2.23 9.65 22.21 0.21 -2.01 16 4 C -0.10 -2.38 8.65 22.44 0.19 -2.19 16 5 C 0.14 2.78 6.27 38.10 0.24 3.02 16 6 N -0.67 -12.21 5.26 -317.28 -1.67 -13.88 16 7 C 0.71 18.39 8.05 179.05 1.44 19.83 16 8 O -0.61 -20.36 13.52 -3.98 -0.05 -20.41 16 9 N -0.62 -15.79 3.00 -835.04 -2.51 -18.30 16 10 C 0.15 4.30 6.61 86.50 0.57 4.87 16 11 C 0.06 2.04 5.47 86.54 0.47 2.51 16 12 N -0.54 -20.95 4.62 -898.89 -4.15 -25.10 16 13 C 0.21 10.50 4.72 85.56 0.40 10.90 16 14 C -0.52 -28.29 8.41 25.60 0.22 -28.08 16 15 H 0.07 3.47 7.13 -2.90 -0.02 3.45 16 16 C 0.00 0.10 5.46 84.66 0.46 0.57 16 17 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 18 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 C 0.04 1.04 5.62 86.39 0.49 1.53 16 23 C 0.12 2.49 6.60 86.35 0.57 3.06 16 24 C -0.10 -1.30 9.44 22.66 0.21 -1.09 16 25 C -0.14 -2.33 5.87 -20.11 -0.12 -2.45 16 26 C 0.56 9.40 7.97 86.79 0.69 10.09 16 27 N -0.83 -6.20 8.82 -175.59 -1.55 -7.75 16 28 O -0.57 -13.46 14.19 -3.88 -0.06 -13.52 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.06 8.04 -2.39 -0.02 1.04 16 31 H 0.08 1.68 5.89 -2.39 -0.01 1.66 16 32 H 0.15 2.36 8.05 -2.91 -0.02 2.34 16 33 H 0.12 3.29 6.43 -2.91 -0.02 3.28 16 34 H 0.42 4.61 6.31 -92.71 -0.58 4.03 16 35 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.09 2.66 7.10 -2.39 -0.02 2.65 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 3.19 6.67 -2.39 -0.02 3.18 16 39 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 40 H 0.01 0.63 7.97 -2.38 -0.02 0.61 16 41 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 2.52 7.99 -2.39 -0.02 2.50 16 44 H 0.11 1.28 5.63 -2.39 -0.01 1.26 16 45 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.17 0.82 6.45 -2.91 -0.02 0.81 16 47 H 0.41 0.69 6.90 -92.71 -0.64 0.05 16 48 H 0.41 2.07 8.93 -92.71 -0.83 1.24 16 Total: -1.00 -75.78 383.57 -2.13 -77.92 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -1.02 Total: 12.42 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.56 Total: 18.01 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -9.59 Total: -119.44 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.11 Total: -33.93 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.78 -2.13 -77.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465536822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.349 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds