Wall clock time and date at job start Sat Apr 11 2020 07:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21291 * 120.00033 * 2 1 4 4 N 1.34772 * 120.00000 * 180.02562 * 2 1 3 5 5 C 1.39920 * 119.99928 * 184.38753 * 4 2 1 6 6 C 1.38772 * 120.03771 * 330.44785 * 5 4 2 7 7 C 1.38725 * 119.86012 * 180.02562 * 6 5 4 8 8 N 1.39945 * 120.03033 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99808 * 142.22659 * 8 7 6 10 10 O 1.21585 * 120.00163 * 4.98055 * 9 8 7 11 11 N 1.34770 * 119.99743 * 184.97509 * 9 8 7 12 12 C 1.46970 * 120.59480 * 174.12256 * 11 9 8 13 13 C 1.53365 * 108.63511 * 235.24924 * 12 11 9 14 14 N 1.46957 * 108.63768 * 310.57456 * 13 12 11 15 15 C 1.36945 * 120.59393 * 235.20502 * 14 13 12 16 16 H 1.07998 * 119.99777 * 20.29001 * 15 14 13 17 17 C 1.38814 * 119.99659 * 200.01644 * 15 14 13 18 18 N 1.31616 * 119.99634 * 221.45888 * 17 15 14 19 19 Si 1.86797 * 120.00269 * 41.46032 * 17 15 14 20 20 H 1.48491 * 109.47376 * 94.30210 * 19 17 15 21 21 H 1.48502 * 109.46976 * 214.30397 * 19 17 15 22 22 H 1.48507 * 109.46999 * 334.29885 * 19 17 15 23 23 C 1.46962 * 118.81422 * 55.48029 * 14 13 12 24 24 C 1.46966 * 120.59900 * 354.14491 * 11 9 8 25 25 C 1.38933 * 119.92865 * 0.27803 * 7 6 5 26 26 C 1.38139 * 120.07461 * 359.44647 * 25 7 6 27 27 C 1.38180 * 120.13840 * 0.55582 * 26 25 7 28 28 C 1.50697 * 119.96601 * 179.69891 * 27 26 25 29 29 H 1.08997 * 109.47165 * 270.00012 * 1 2 3 30 30 H 1.09000 * 109.46696 * 29.99915 * 1 2 3 31 31 H 1.08989 * 109.47137 * 149.99631 * 1 2 3 32 32 H 0.97001 * 119.99859 * 4.39507 * 4 2 1 33 33 H 1.07996 * 120.06970 * 0.05170 * 6 5 4 34 34 H 0.96996 * 119.99793 * 322.22035 * 8 7 6 35 35 H 1.08999 * 109.60967 * 115.50269 * 12 11 9 36 36 H 1.09002 * 109.60902 * 354.99443 * 12 11 9 37 37 H 1.09000 * 109.60876 * 190.82571 * 13 12 11 38 38 H 1.09002 * 109.75016 * 70.40346 * 13 12 11 39 39 H 0.96999 * 120.00105 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.61502 * 64.26376 * 23 14 13 41 41 H 1.08996 * 109.61547 * 184.78055 * 23 14 13 42 42 H 1.08997 * 109.61570 * 244.49651 * 24 11 9 43 43 H 1.09007 * 109.60422 * 4.83516 * 24 11 9 44 44 H 1.07999 * 119.96073 * 179.72368 * 25 7 6 45 45 H 1.08001 * 119.93362 * 180.27392 * 26 25 7 46 46 H 1.08998 * 109.47345 * 270.01887 * 28 27 26 47 47 H 1.08998 * 109.47330 * 30.01717 * 28 27 26 48 48 H 1.09004 * 109.47128 * 150.01824 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5770 -1.1690 0.0922 6 6 4.3081 -0.1026 -0.4121 7 6 5.6922 -0.1085 -0.3187 8 7 6.4329 0.9652 -0.8256 9 6 7.5291 1.3964 -0.1708 10 8 7.9267 0.7971 0.8096 11 7 8.1847 2.4918 -0.6027 12 6 9.3026 3.0486 0.1720 13 6 9.0082 4.5247 0.4658 14 7 8.6177 5.1843 -0.7881 15 6 9.2833 6.2979 -1.2265 16 1 10.2759 6.5131 -0.8595 17 6 8.6842 7.1470 -2.1469 18 7 9.3917 7.6487 -3.1368 19 14 6.8742 7.5775 -1.9805 20 1 6.7351 8.8494 -1.2271 21 1 6.2765 7.7341 -3.3309 22 1 6.1719 6.4909 -1.2514 23 6 7.4961 4.6310 -1.5600 24 6 7.7942 3.1514 -1.8567 25 6 6.3424 -1.1838 0.2738 26 6 5.6116 -2.2412 0.7800 27 6 4.2328 -2.2384 0.6885 28 6 3.4399 -3.3971 1.2360 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6980 -2.0059 -0.0653 33 1 3.8005 0.7302 -0.8760 34 1 6.1574 1.3990 -1.6483 35 1 10.2239 2.9670 -0.4048 36 1 9.4057 2.5024 1.1097 37 1 9.9013 5.0029 0.8679 38 1 8.1955 4.6016 1.1881 39 1 8.9733 8.2424 -3.7798 40 1 6.5771 4.7125 -0.9797 41 1 7.3905 5.1792 -2.4961 42 1 8.6081 3.0773 -2.5779 43 1 6.9028 2.6712 -2.2603 44 1 7.4201 -1.1910 0.3428 45 1 6.1192 -3.0739 1.2442 46 1 3.3085 -4.1479 0.4568 47 1 3.9738 -3.8372 2.0782 48 1 2.4637 -3.0443 1.5689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475954275.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:49 Heat of formation + Delta-G solvation = 19.279148 kcal Electronic energy + Delta-G solvation = -30643.927596 eV Core-core repulsion = 26507.802390 eV Total energy + Delta-G solvation = -4136.125206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.04679 -40.26998 -38.66129 -37.20717 -35.53680 -34.39126 -33.91983 -31.97685 -31.31769 -31.10718 -30.50983 -28.93440 -27.37556 -26.09029 -23.63337 -23.40407 -23.26352 -21.88196 -21.00949 -20.58992 -19.28266 -18.63323 -17.86134 -17.20048 -16.42521 -16.06482 -15.93803 -15.62442 -15.41927 -14.98259 -14.74931 -14.49382 -14.28690 -14.09385 -14.01450 -13.80057 -13.63116 -13.50443 -13.07819 -13.02743 -12.77476 -12.71592 -12.56790 -12.21330 -12.15202 -11.97151 -11.75355 -11.71133 -11.06209 -10.85307 -10.78756 -10.44429 -10.40203 -10.21755 -10.04831 -9.93506 -9.62907 -9.46768 -8.77886 -8.44987 -8.22825 -7.84488 -7.11357 -6.12120 -3.21889 1.16506 1.31454 2.29324 2.63367 2.87415 3.28929 3.36601 3.49471 3.56539 3.78980 3.97462 4.34602 4.51563 4.71388 4.74116 4.75036 4.80449 4.93770 5.04707 5.18354 5.26130 5.28131 5.32948 5.38933 5.48833 5.58985 5.60596 5.62548 5.65584 5.74147 5.89885 6.03203 6.06970 6.11826 6.18602 6.24837 6.36083 6.44522 6.49051 6.58387 6.59592 6.74140 6.85824 7.06516 7.09084 7.17576 7.78244 7.82270 8.04414 8.20200 8.70974 8.85683 9.66557 10.05274 11.01037 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002890 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.924534 B = 9684.914754 C =11360.109727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.505 3.495 3 O -0.519 6.519 4 N -0.669 5.669 5 C 0.157 3.843 6 C -0.155 4.155 7 C 0.187 3.813 8 N -0.690 5.690 9 C 0.707 3.293 10 O -0.584 6.584 11 N -0.611 5.611 12 C 0.114 3.886 13 C 0.132 3.868 14 N -0.598 5.598 15 C -0.277 4.277 16 H 0.086 0.914 17 C 0.039 3.961 18 N -0.870 5.870 19 Si 0.824 3.176 20 H -0.293 1.293 21 H -0.293 1.293 22 H -0.259 1.259 23 C 0.134 3.866 24 C 0.090 3.910 25 C -0.128 4.128 26 C -0.085 4.085 27 C -0.138 4.138 28 C -0.109 4.109 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.410 0.590 33 H 0.149 0.851 34 H 0.406 0.594 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.033 0.967 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.165 -23.657 4.296 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.293 3.707 3 O -0.393 6.393 4 N -0.315 5.315 5 C 0.062 3.938 6 C -0.177 4.177 7 C 0.090 3.910 8 N -0.339 5.339 9 C 0.409 3.591 10 O -0.463 6.463 11 N -0.347 5.347 12 C -0.010 4.010 13 C 0.005 3.995 14 N -0.322 5.322 15 C -0.403 4.403 16 H 0.104 0.896 17 C -0.162 4.162 18 N -0.510 5.510 19 Si 0.650 3.350 20 H -0.221 1.221 21 H -0.220 1.220 22 H -0.184 1.184 23 C 0.007 3.993 24 C -0.035 4.035 25 C -0.149 4.149 26 C -0.104 4.104 27 C -0.141 4.141 28 C -0.165 4.165 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.246 0.754 33 H 0.166 0.834 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.396 -23.073 4.849 28.159 hybrid contribution -1.541 0.457 -0.464 1.673 sum -16.937 -22.616 4.385 28.593 Atomic orbital electron populations 1.21893 0.90700 1.05268 1.05166 1.21059 0.90932 0.83229 0.75436 1.90758 1.70095 1.31348 1.47139 1.43580 1.05220 1.09831 1.72855 1.17193 0.82058 0.95710 0.98833 1.21117 0.91722 1.00495 1.04403 1.17330 0.89447 0.86968 0.97211 1.42811 1.28030 1.34708 1.28390 1.15790 0.79807 0.81029 0.82486 1.90868 1.68522 1.58290 1.28591 1.47228 1.35095 1.27278 1.25081 1.22143 0.87308 0.95608 0.95913 1.21357 0.99165 0.90509 0.88436 1.44312 1.37168 1.29828 1.20850 1.18776 0.97726 1.00743 1.23078 0.89640 1.25026 0.96730 0.98528 0.95928 1.70213 1.37675 1.32698 1.10379 0.87792 0.89656 0.79982 0.77543 1.22054 1.22019 1.18385 1.21726 0.90583 0.90320 0.96719 1.22522 0.99522 0.96013 0.85445 1.21280 1.01437 0.91758 1.00393 1.20690 0.92231 0.98210 0.99243 1.19546 0.94375 0.97177 1.02993 1.20659 0.99310 0.95675 1.00891 0.88450 0.88395 0.89969 0.75360 0.83403 0.75509 0.91388 0.89500 0.90580 0.95572 0.92741 0.94964 0.90392 0.90464 0.91872 0.84274 0.85492 0.91429 0.91167 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.31 36.01 0.37 -0.44 16 2 C 0.51 4.85 7.81 -10.99 -0.09 4.76 16 3 O -0.52 -7.67 14.21 5.55 0.08 -7.59 16 4 N -0.67 -5.47 4.87 -9.88 -0.05 -5.52 16 5 C 0.16 1.79 6.37 -83.72 -0.53 1.26 16 6 C -0.15 -2.16 8.67 -39.20 -0.34 -2.50 16 7 C 0.19 2.78 6.24 -83.72 -0.52 2.26 16 8 N -0.69 -10.58 5.24 -14.24 -0.07 -10.65 16 9 C 0.71 12.67 8.13 -86.92 -0.71 11.97 16 10 O -0.58 -11.73 13.39 5.29 0.07 -11.66 16 11 N -0.61 -10.91 2.95 -177.94 -0.52 -11.44 16 12 C 0.11 2.05 6.58 -3.60 -0.02 2.03 16 13 C 0.13 2.64 6.67 -3.60 -0.02 2.61 16 14 N -0.60 -13.98 2.80 -171.78 -0.48 -14.46 16 15 C -0.28 -7.48 9.87 -15.05 -0.15 -7.63 16 16 H 0.09 2.44 8.01 -52.49 -0.42 2.02 16 17 C 0.04 1.10 4.77 -17.43 -0.08 1.02 16 18 N -0.87 -25.60 13.97 55.49 0.78 -24.82 16 19 Si 0.82 20.75 26.35 -169.99 -4.48 16.27 16 20 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.26 -6.30 5.07 56.52 0.29 -6.02 16 23 C 0.13 2.84 4.59 -3.36 -0.02 2.82 16 24 C 0.09 1.55 6.61 -3.36 -0.02 1.53 16 25 C -0.13 -1.81 8.68 -39.36 -0.34 -2.15 16 26 C -0.08 -0.96 9.69 -39.64 -0.38 -1.34 16 27 C -0.14 -1.39 5.90 -104.40 -0.62 -2.01 16 28 C -0.11 -0.68 9.45 36.00 0.34 -0.34 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.16 8.14 -51.94 -0.42 -0.27 16 32 H 0.41 1.79 7.60 -40.82 -0.31 1.48 16 33 H 0.15 2.23 5.80 -52.49 -0.30 1.93 16 34 H 0.41 5.42 6.28 -40.82 -0.26 5.16 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.51 7.02 -51.93 -0.36 1.15 16 37 H 0.08 1.45 7.89 -51.93 -0.41 1.04 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.03 0.71 6.96 -51.93 -0.36 0.35 16 41 H 0.08 1.76 5.13 -51.93 -0.27 1.49 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 0.88 5.55 -51.93 -0.29 0.60 16 44 H 0.14 2.16 6.43 -52.49 -0.34 1.82 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 48 H 0.06 0.31 7.07 -51.93 -0.37 -0.06 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -35.59 378.59 -8.85 -44.44 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.74 Total: 5.88 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -3.14 Total: 13.85 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.35 Total: -66.89 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.15 Total: -19.26 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.48 Total: 16.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.59 -8.85 -44.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475954275.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.718 kcal (2) G-P(sol) polarization free energy of solvation -35.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds