Wall clock time and date at job start Sat Apr 11 2020 07:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38350 * 119.46057 * 2 1 4 4 C 1.38350 * 119.30291 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28796 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.55929 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99933 * 335.74015 * 6 5 4 8 8 N 1.34771 * 119.99778 * 155.73042 * 6 5 4 9 9 C 1.47422 * 125.65078 * 354.19037 * 8 6 5 10 10 C 1.54917 * 104.83201 * 204.09146 * 9 8 6 11 11 H 1.09000 * 111.00361 * 204.87958 * 10 9 8 12 12 C 1.53002 * 111.00596 * 81.06349 * 10 9 8 13 13 C 1.55405 * 101.66568 * 323.07389 * 10 9 8 14 14 H 1.08996 * 110.69421 * 277.04883 * 13 10 9 15 15 N 1.46900 * 110.85328 * 153.69862 * 13 10 9 16 16 C 1.46905 * 110.99971 * 160.08434 * 15 13 10 17 17 C 1.50695 * 109.47203 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99746 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00016 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99893 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99931 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99964 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00369 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00020 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47000 * 90.00104 * 24 22 20 26 26 H 1.48502 * 109.47274 * 210.00246 * 24 22 20 27 27 H 1.48500 * 109.47168 * 330.00582 * 24 22 20 28 28 C 1.47026 * 125.64563 * 174.14590 * 8 6 5 29 29 C 1.39511 * 118.88280 * 0.28240 * 5 4 3 30 30 N 1.31696 * 120.56548 * 359.44870 * 29 5 4 31 31 H 1.08999 * 109.47157 * 89.99481 * 1 2 3 32 32 H 1.08998 * 109.46895 * 209.99867 * 1 2 3 33 33 H 1.08995 * 109.46863 * 329.99775 * 1 2 3 34 34 H 1.08007 * 120.34869 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.85993 * 179.97438 * 4 3 2 36 36 H 1.09000 * 110.36428 * 322.92535 * 9 8 6 37 37 H 1.08994 * 110.37065 * 85.14574 * 9 8 6 38 38 H 1.09000 * 109.46840 * 61.45467 * 12 10 9 39 39 H 1.08997 * 109.47100 * 181.45652 * 12 10 9 40 40 H 1.08998 * 109.46735 * 301.45593 * 12 10 9 41 41 H 1.00897 * 110.99936 * 284.03984 * 15 13 10 42 42 H 1.08995 * 109.46936 * 300.00450 * 16 15 13 43 43 H 1.09003 * 109.46923 * 60.00090 * 16 15 13 44 44 H 0.96993 * 120.00090 * 359.97438 * 19 17 16 45 45 H 0.96993 * 120.00355 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88433 * 298.39506 * 28 8 6 47 47 H 1.09000 * 109.88145 * 59.40877 * 28 8 6 48 48 H 1.08005 * 119.71851 * 179.72474 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0967 -0.0005 7 8 6.3562 0.8364 -0.4331 8 7 6.3364 -1.1883 0.4793 9 6 5.6848 -2.3334 1.1406 10 6 6.7924 -2.9669 2.0192 11 1 6.5887 -4.0215 2.2045 12 6 6.9527 -2.2028 3.3350 13 6 8.0469 -2.7899 1.1193 14 1 8.1094 -3.5918 0.3837 15 7 9.2693 -2.7316 1.9319 16 6 10.4556 -3.0373 1.1210 17 6 11.6871 -2.9685 1.9867 18 8 11.5866 -2.6916 3.1633 19 7 12.9003 -3.2137 1.4533 20 6 14.0208 -3.1506 2.2408 21 1 13.9313 -2.9041 3.2884 22 6 15.2716 -3.4028 1.6908 23 7 16.3456 -3.3429 2.4456 24 14 15.4264 -3.8285 -0.1215 25 1 15.6063 -2.5825 -0.9090 26 1 16.6003 -4.7154 -0.3231 27 1 14.1956 -4.5260 -0.5730 28 6 7.7850 -1.4348 0.4289 29 6 3.4717 -1.2042 -0.0060 30 7 2.1559 -1.1486 -0.0002 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6444 2.1382 -0.0004 35 1 4.1276 2.1264 -0.0010 36 1 4.8568 -1.9918 1.7618 37 1 5.3313 -3.0492 0.3986 38 1 6.0204 -2.2492 3.8980 39 1 7.7539 -2.6527 3.9212 40 1 7.1978 -1.1620 3.1232 41 1 9.3612 -1.8338 2.3829 42 1 10.3613 -4.0393 0.7027 43 1 10.5390 -2.3120 0.3115 44 1 12.9807 -3.4347 0.5123 45 1 17.2187 -3.5193 2.0618 46 1 8.1182 -1.4765 -0.6081 47 1 8.3146 -0.6415 0.9566 48 1 3.9669 -2.1640 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484880773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:12 Heat of formation + Delta-G solvation = -15.947981 kcal Electronic energy + Delta-G solvation = -29644.524209 eV Core-core repulsion = 25506.871441 eV Total energy + Delta-G solvation = -4137.652769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28090 -40.03364 -38.63494 -37.98946 -35.02776 -33.94704 -33.49079 -32.86240 -32.28635 -31.66444 -29.65836 -28.14862 -27.10824 -26.27671 -24.45928 -24.00161 -23.25116 -22.34594 -20.26041 -20.04516 -19.43091 -18.47930 -18.01081 -17.05714 -16.72474 -16.36316 -16.03152 -15.84861 -15.51399 -15.00771 -14.82474 -14.67440 -14.40956 -14.27462 -13.98840 -13.62252 -13.54821 -13.38710 -13.06213 -12.95129 -12.85528 -12.77745 -12.69965 -12.57874 -12.43664 -12.14895 -12.03007 -11.83510 -11.31690 -11.18035 -11.05000 -10.91328 -10.60724 -10.53362 -10.38233 -9.98964 -9.86044 -9.59006 -9.46306 -9.00984 -8.63947 -8.26893 -8.18921 -6.32476 -3.84128 0.20865 0.74131 2.41302 2.53179 3.01536 3.06013 3.14445 3.32087 3.66166 3.71134 3.92033 4.04977 4.09230 4.15968 4.23728 4.35724 4.41379 4.52579 4.71840 4.81218 4.84542 4.88141 4.94274 5.04239 5.07559 5.10581 5.13563 5.20215 5.37433 5.44548 5.46030 5.48169 5.52979 5.57987 5.59707 5.67259 5.75015 5.79958 5.89307 5.96015 6.04216 6.09896 6.32819 6.96736 7.09685 7.39254 7.42356 7.56097 7.76536 8.12586 8.57606 8.93224 9.40590 9.80007 10.80537 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.001878 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.918510 B =14907.188310 C =15289.504261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.147 3.853 3 C -0.179 4.179 4 C -0.015 4.015 5 C -0.189 4.189 6 C 0.577 3.423 7 O -0.532 6.532 8 N -0.606 5.606 9 C 0.092 3.908 10 C -0.090 4.090 11 H 0.099 0.901 12 C -0.141 4.141 13 C 0.081 3.919 14 H 0.098 0.902 15 N -0.649 5.649 16 C 0.044 3.956 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.077 3.923 29 C 0.130 3.870 30 N -0.488 5.488 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.356 0.644 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.607 3.846 -7.995 32.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.199 4.199 4 C -0.041 4.041 5 C -0.194 4.194 6 C 0.366 3.634 7 O -0.410 6.410 8 N -0.340 5.340 9 C -0.031 4.031 10 C -0.110 4.110 11 H 0.117 0.883 12 C -0.198 4.198 13 C -0.031 4.031 14 H 0.116 0.884 15 N -0.281 5.281 16 C -0.089 4.089 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.047 4.047 29 C -0.028 4.028 30 N -0.197 5.197 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.177 0.823 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -31.623 3.176 -7.172 32.581 hybrid contribution 1.028 1.239 -2.092 2.640 sum -30.595 4.415 -9.264 32.270 Atomic orbital electron populations 1.20800 0.88349 1.03915 1.03485 1.21593 0.97432 0.88359 0.91667 1.21975 0.94414 0.99684 1.03838 1.21717 0.94148 0.97772 0.90495 1.20885 0.94147 0.95750 1.08609 1.17727 0.86595 0.81224 0.77897 1.90815 1.67133 1.35776 1.47246 1.48205 1.08378 1.19064 1.58361 1.22868 0.96947 0.87741 0.95568 1.22430 0.92530 1.00912 0.95126 0.88282 1.21653 1.02311 0.99964 0.95891 1.22779 0.91137 0.94996 0.94173 0.88417 1.60192 0.99549 1.39141 1.29212 1.21798 0.90423 1.01788 0.94871 1.19655 0.83730 0.84338 0.88800 1.90573 1.85728 1.51956 1.16412 1.42197 1.06507 1.63436 1.10711 1.19430 0.82566 1.45184 0.96266 0.86259 1.25040 0.95129 0.97637 0.98308 1.69618 0.98368 1.48302 1.35733 0.86674 0.78529 0.79158 0.85033 1.19649 1.20152 1.19469 1.22956 0.80670 0.99071 1.02012 1.23556 0.89339 0.98259 0.91693 1.67614 1.09471 1.29092 1.13537 0.89927 0.90058 0.90343 0.83958 0.83623 0.89906 0.90532 0.92958 0.90073 0.93119 0.82294 0.89191 0.93496 0.79680 0.91591 0.91120 0.90872 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.16 36.01 0.37 -0.10 16 2 C 0.15 1.09 6.78 -82.51 -0.56 0.53 16 3 C -0.18 -1.22 9.72 -39.50 -0.38 -1.60 16 4 C -0.02 -0.13 9.72 -38.87 -0.38 -0.51 16 5 C -0.19 -1.86 5.68 -104.82 -0.60 -2.46 16 6 C 0.58 6.97 7.66 -12.33 -0.09 6.87 16 7 O -0.53 -8.38 17.00 5.32 0.09 -8.29 16 8 N -0.61 -6.18 3.31 -171.63 -0.57 -6.75 16 9 C 0.09 0.67 4.47 -2.53 -0.01 0.66 16 10 C -0.09 -0.76 3.64 -88.33 -0.32 -1.09 16 11 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 12 C -0.14 -1.39 8.27 37.16 0.31 -1.08 16 13 C 0.08 0.82 3.05 -65.74 -0.20 0.62 16 14 H 0.10 0.86 7.90 -51.93 -0.41 0.45 16 15 N -0.65 -8.97 5.06 -105.91 -0.54 -9.51 16 16 C 0.04 0.67 6.02 -4.98 -0.03 0.64 16 17 C 0.45 9.87 7.82 -10.99 -0.09 9.78 16 18 O -0.56 -14.77 15.78 5.54 0.09 -14.68 16 19 N -0.59 -13.79 5.09 -10.97 -0.06 -13.84 16 20 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 24 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 28 C 0.08 0.84 6.13 -3.06 -0.02 0.82 16 29 C 0.13 1.12 9.27 -17.14 -0.16 0.96 16 30 N -0.49 -4.41 10.25 -9.14 -0.09 -4.50 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 35 H 0.15 1.20 7.91 -52.48 -0.42 0.79 16 36 H 0.08 0.57 6.76 -51.93 -0.35 0.21 16 37 H 0.08 0.41 6.84 -51.93 -0.36 0.05 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.96 7.71 -51.93 -0.40 0.56 16 40 H 0.05 0.55 7.81 -51.93 -0.41 0.15 16 41 H 0.36 5.34 7.26 -39.29 -0.29 5.06 16 42 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 43 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 44 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.92 7.57 -51.93 -0.39 0.53 16 48 H 0.17 1.14 4.62 -52.48 -0.24 0.90 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -35.41 391.88 -8.37 -43.78 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.85 Total: 11.85 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.41 Total: 6.36 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.48 Total: -59.46 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.18 Total: -22.98 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.41 -8.37 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484880773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.831 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds