Wall clock time and date at job start Sat Apr 11 2020 07:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38350 * 119.46057 * 2 1 4 4 C 1.38350 * 119.30291 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28796 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.55929 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99933 * 335.74015 * 6 5 4 8 8 N 1.34771 * 119.99778 * 155.73042 * 6 5 4 9 9 C 1.47422 * 125.65078 * 354.19037 * 8 6 5 10 10 C 1.54917 * 104.83201 * 204.09146 * 9 8 6 11 11 H 1.09000 * 111.00361 * 204.87958 * 10 9 8 12 12 C 1.53002 * 111.00596 * 81.06349 * 10 9 8 13 13 C 1.55405 * 101.66568 * 323.07389 * 10 9 8 14 14 H 1.08996 * 110.69421 * 277.04883 * 13 10 9 15 15 N 1.46900 * 110.85328 * 153.69862 * 13 10 9 16 16 C 1.46905 * 110.99971 * 160.08434 * 15 13 10 17 17 C 1.50695 * 109.47203 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99746 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00016 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99893 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99931 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99964 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00369 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00020 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47000 * 90.00104 * 24 22 20 26 26 H 1.48502 * 109.47274 * 210.00246 * 24 22 20 27 27 H 1.48500 * 109.47168 * 330.00582 * 24 22 20 28 28 C 1.47026 * 125.64563 * 174.14590 * 8 6 5 29 29 C 1.39511 * 118.88280 * 0.28240 * 5 4 3 30 30 N 1.31696 * 120.56548 * 359.44870 * 29 5 4 31 31 H 1.08999 * 109.47157 * 89.99481 * 1 2 3 32 32 H 1.08998 * 109.46895 * 209.99867 * 1 2 3 33 33 H 1.08995 * 109.46863 * 329.99775 * 1 2 3 34 34 H 1.08007 * 120.34869 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.85993 * 179.97438 * 4 3 2 36 36 H 1.09000 * 110.36428 * 322.92535 * 9 8 6 37 37 H 1.08994 * 110.37065 * 85.14574 * 9 8 6 38 38 H 1.09000 * 109.46840 * 61.45467 * 12 10 9 39 39 H 1.08997 * 109.47100 * 181.45652 * 12 10 9 40 40 H 1.08998 * 109.46735 * 301.45593 * 12 10 9 41 41 H 1.00897 * 110.99936 * 284.03984 * 15 13 10 42 42 H 1.08995 * 109.46936 * 300.00450 * 16 15 13 43 43 H 1.09003 * 109.46923 * 60.00090 * 16 15 13 44 44 H 0.96993 * 120.00090 * 359.97438 * 19 17 16 45 45 H 0.96993 * 120.00355 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88433 * 298.39506 * 28 8 6 47 47 H 1.09000 * 109.88145 * 59.40877 * 28 8 6 48 48 H 1.08005 * 119.71851 * 179.72474 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0967 -0.0005 7 8 6.3562 0.8364 -0.4331 8 7 6.3364 -1.1883 0.4793 9 6 5.6848 -2.3334 1.1406 10 6 6.7924 -2.9669 2.0192 11 1 6.5887 -4.0215 2.2045 12 6 6.9527 -2.2028 3.3350 13 6 8.0469 -2.7899 1.1193 14 1 8.1094 -3.5918 0.3837 15 7 9.2693 -2.7316 1.9319 16 6 10.4556 -3.0373 1.1210 17 6 11.6871 -2.9685 1.9867 18 8 11.5866 -2.6916 3.1633 19 7 12.9003 -3.2137 1.4533 20 6 14.0208 -3.1506 2.2408 21 1 13.9313 -2.9041 3.2884 22 6 15.2716 -3.4028 1.6908 23 7 16.3456 -3.3429 2.4456 24 14 15.4264 -3.8285 -0.1215 25 1 15.6063 -2.5825 -0.9090 26 1 16.6003 -4.7154 -0.3231 27 1 14.1956 -4.5260 -0.5730 28 6 7.7850 -1.4348 0.4289 29 6 3.4717 -1.2042 -0.0060 30 7 2.1559 -1.1486 -0.0002 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6444 2.1382 -0.0004 35 1 4.1276 2.1264 -0.0010 36 1 4.8568 -1.9918 1.7618 37 1 5.3313 -3.0492 0.3986 38 1 6.0204 -2.2492 3.8980 39 1 7.7539 -2.6527 3.9212 40 1 7.1978 -1.1620 3.1232 41 1 9.3612 -1.8338 2.3829 42 1 10.3613 -4.0393 0.7027 43 1 10.5390 -2.3120 0.3115 44 1 12.9807 -3.4347 0.5123 45 1 17.2187 -3.5193 2.0618 46 1 8.1182 -1.4765 -0.6081 47 1 8.3146 -0.6415 0.9566 48 1 3.9669 -2.1640 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484880773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:11 Heat of formation + Delta-G solvation = -43.503904 kcal Electronic energy + Delta-G solvation = -29645.719124 eV Core-core repulsion = 25506.871441 eV Total energy + Delta-G solvation = -4138.847683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00343 -40.79848 -40.19653 -39.09061 -36.29163 -35.69426 -34.16355 -33.75144 -33.46747 -33.08637 -30.49737 -28.98725 -27.86289 -27.61302 -25.66202 -24.97136 -24.08825 -23.02702 -21.32938 -20.99973 -20.85326 -20.30326 -18.84320 -17.86490 -17.59539 -17.50594 -16.97793 -16.92558 -16.64936 -16.45126 -15.90749 -15.58513 -15.27503 -15.15260 -15.05416 -14.95108 -14.50162 -14.38459 -14.19050 -14.12961 -13.90735 -13.78486 -13.36725 -13.32214 -13.28210 -13.17132 -13.02048 -12.88744 -12.85837 -12.41447 -12.12670 -11.99852 -11.85647 -11.65893 -11.51430 -11.36570 -11.01433 -10.53351 -10.43360 -10.24931 -10.07271 -9.80553 -9.37752 -8.41394 -6.02355 -0.43050 0.14767 1.30097 1.35611 1.44469 1.59464 1.74427 1.96275 2.22932 2.67056 2.72224 3.09258 3.15258 3.29805 3.39400 3.53188 3.63607 3.73034 3.75912 3.96768 4.01938 4.10808 4.14903 4.19590 4.27946 4.43391 4.49520 4.55092 4.57264 4.62555 4.68766 4.70881 4.75638 4.80678 4.84707 4.96135 5.03921 5.06621 5.16275 5.18563 5.28727 5.48420 5.52579 5.57462 5.89490 6.02149 6.24140 6.30264 6.59393 6.79640 6.88151 6.90944 7.39869 7.96577 8.76227 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.001878 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.918510 B =14907.188310 C =15289.504261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.142 3.858 3 C -0.174 4.174 4 C -0.028 4.028 5 C -0.207 4.207 6 C 0.573 3.427 7 O -0.583 6.583 8 N -0.603 5.603 9 C 0.093 3.907 10 C -0.085 4.085 11 H 0.122 0.878 12 C -0.137 4.137 13 C 0.087 3.913 14 H 0.126 0.874 15 N -0.662 5.662 16 C 0.058 3.942 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.260 1.260 26 H -0.275 1.275 27 H -0.228 1.228 28 C 0.079 3.921 29 C 0.134 3.866 30 N -0.505 5.505 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.172 0.828 35 H 0.141 0.859 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.344 0.656 42 H 0.124 0.876 43 H 0.074 0.926 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.992 2.263 -11.178 36.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.005 3.995 3 C -0.193 4.193 4 C -0.055 4.055 5 C -0.212 4.212 6 C 0.363 3.637 7 O -0.464 6.464 8 N -0.335 5.335 9 C -0.028 4.028 10 C -0.104 4.104 11 H 0.140 0.860 12 C -0.195 4.195 13 C -0.024 4.024 14 H 0.143 0.857 15 N -0.293 5.293 16 C -0.074 4.074 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.458 4.458 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.151 1.151 28 C -0.046 4.046 29 C -0.024 4.024 30 N -0.215 5.215 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.190 0.810 35 H 0.159 0.841 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.164 0.836 42 H 0.142 0.858 43 H 0.092 0.908 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -35.061 1.554 -10.351 36.590 hybrid contribution 1.975 1.806 -0.925 2.831 sum -33.086 3.360 -11.276 35.116 Atomic orbital electron populations 1.20908 0.86078 1.04946 1.04445 1.22175 0.98985 0.88095 0.90227 1.22270 0.93545 1.00926 1.02553 1.21873 0.95244 0.97453 0.90902 1.20803 0.92809 0.96879 1.10727 1.18118 0.87491 0.80853 0.77206 1.90778 1.68279 1.37598 1.49735 1.48259 1.08254 1.19357 1.57638 1.23085 0.96465 0.87150 0.96137 1.22457 0.92038 1.01969 0.93958 0.86003 1.21589 1.02135 0.98818 0.96929 1.22897 0.89895 0.95064 0.94545 0.85653 1.60229 1.00395 1.38628 1.30021 1.21745 0.87328 1.04545 0.93804 1.21006 0.85153 0.81349 0.88920 1.90553 1.86747 1.53300 1.19285 1.42026 1.05720 1.64329 1.11178 1.19007 0.85195 1.47131 0.94513 0.92717 1.26118 0.93770 0.96557 1.04933 1.69804 0.99310 1.49457 1.38949 0.85372 0.80128 0.79511 0.76553 1.18451 1.20034 1.15128 1.22880 0.81107 0.98818 1.01821 1.23751 0.89322 0.98374 0.90984 1.67699 1.09496 1.29976 1.14337 0.88819 0.90184 0.88199 0.81034 0.84079 0.89098 0.87220 0.91414 0.92466 0.95022 0.83617 0.85781 0.90800 0.77452 0.91177 0.90884 0.93482 0.79615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 71.24 0.72 0.13 16 2 C 0.14 1.76 6.78 42.57 0.29 2.05 16 3 C -0.17 -2.01 9.72 22.32 0.22 -1.79 16 4 C -0.03 -0.48 9.72 22.73 0.22 -0.26 16 5 C -0.21 -3.93 5.68 -19.99 -0.11 -4.04 16 6 C 0.57 13.79 7.66 86.79 0.66 14.46 16 7 O -0.58 -19.03 17.00 -3.89 -0.07 -19.10 16 8 N -0.60 -11.54 3.31 -815.18 -2.70 -14.24 16 9 C 0.09 1.09 4.47 86.86 0.39 1.48 16 10 C -0.08 -1.21 3.64 -9.31 -0.03 -1.24 16 11 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 12 C -0.14 -2.63 8.27 71.98 0.60 -2.03 16 13 C 0.09 1.52 3.05 46.19 0.14 1.66 16 14 H 0.13 1.60 7.90 -2.39 -0.02 1.58 16 15 N -0.66 -17.49 5.06 -489.00 -2.48 -19.97 16 16 C 0.06 1.63 6.02 85.55 0.52 2.15 16 17 C 0.45 19.74 7.82 87.66 0.69 20.43 16 18 O -0.61 -33.63 15.78 -3.08 -0.05 -33.68 16 19 N -0.59 -27.53 5.09 -306.99 -1.56 -29.09 16 20 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 21 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.58 13.96 21.66 0.30 -56.27 16 24 Si 0.96 38.73 27.74 68.60 1.90 40.63 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 27 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 28 C 0.08 1.63 6.13 86.73 0.53 2.16 16 29 C 0.13 2.04 9.27 85.02 0.79 2.82 16 30 N -0.51 -7.99 10.25 -182.82 -1.87 -9.87 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.14 8.07 -2.39 -0.02 0.12 16 34 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.14 2.41 7.91 -2.91 -0.02 2.39 16 36 H 0.09 0.98 6.76 -2.39 -0.02 0.97 16 37 H 0.11 0.65 6.84 -2.39 -0.02 0.64 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.38 7.71 -2.39 -0.02 1.36 16 40 H 0.03 0.71 7.81 -2.39 -0.02 0.69 16 41 H 0.34 10.57 7.26 -89.70 -0.65 9.92 16 42 H 0.12 2.75 8.09 -2.39 -0.02 2.73 16 43 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 44 H 0.39 14.94 5.76 -92.71 -0.53 14.40 16 45 H 0.28 15.43 8.31 -92.71 -0.77 14.65 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.05 1.22 7.57 -2.39 -0.02 1.21 16 48 H 0.19 1.93 4.62 -2.91 -0.01 1.92 16 Total: -1.00 -85.61 391.88 0.17 -85.43 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.24 Total: 37.02 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.93 Total: 19.14 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -8.31 Total: -129.44 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.11 Total: -52.78 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.63 kcal Total: -85.61 0.17 -85.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484880773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.929 kcal (2) G-P(sol) polarization free energy of solvation -85.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds