Wall clock time and date at job start Sat Apr 11 2020 07:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38172 * 119.54958 * 2 1 4 4 C 1.39798 * 118.99888 * 180.27282 * 3 2 1 5 5 C 1.48142 * 120.92575 * 179.70896 * 4 3 2 6 6 O 1.21521 * 120.00056 * 359.72252 * 5 4 3 7 7 N 1.34775 * 120.00453 * 179.72428 * 5 4 3 8 8 C 1.46500 * 120.00366 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47175 * 34.99887 * 8 7 5 10 10 C 1.52997 * 109.47204 * 274.99782 * 8 7 5 11 11 C 1.53006 * 109.46998 * 154.99756 * 8 7 5 12 12 C 1.53932 * 113.73220 * 276.72612 * 11 8 7 13 13 N 1.47963 * 86.17824 * 221.92173 * 12 11 8 14 14 C 1.46900 * 110.99920 * 137.58603 * 13 12 11 15 15 C 1.50700 * 109.47417 * 90.63534 * 14 13 12 16 16 O 1.21291 * 120.00066 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99987 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99856 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99865 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99788 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99635 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00241 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47380 * 90.00304 * 22 20 18 24 24 H 1.48507 * 109.47178 * 210.00358 * 22 20 18 25 25 H 1.48501 * 109.46992 * 330.00096 * 22 20 18 26 26 C 1.47956 * 90.76518 * 24.69157 * 13 12 11 27 27 C 1.39845 * 118.15423 * 359.44121 * 4 3 2 28 28 C 1.38128 * 119.00031 * 0.26852 * 27 4 3 29 29 N 1.31795 * 119.55447 * 179.70026 * 2 1 3 30 30 H 1.09004 * 109.46855 * 270.30320 * 1 2 3 31 31 H 1.08997 * 109.47594 * 30.29980 * 1 2 3 32 32 H 1.09003 * 109.47374 * 150.30018 * 1 2 3 33 33 H 1.07995 * 120.50576 * 359.97438 * 3 2 1 34 34 H 0.97001 * 119.99752 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47140 * 300.00127 * 10 8 7 36 36 H 1.09001 * 109.47230 * 59.99271 * 10 8 7 37 37 H 1.09001 * 109.47375 * 180.02562 * 10 8 7 38 38 H 1.09001 * 112.93489 * 48.43742 * 11 8 7 39 39 H 1.08997 * 113.76329 * 336.24011 * 12 11 8 40 40 H 1.08998 * 113.75871 * 107.60749 * 12 11 8 41 41 H 1.09003 * 109.47176 * 210.64391 * 14 13 12 42 42 H 1.09005 * 109.47269 * 330.63940 * 14 13 12 43 43 H 0.96997 * 119.99763 * 0.02562 * 17 15 14 44 44 H 0.97003 * 119.99841 * 179.97438 * 21 20 18 45 45 H 1.09002 * 113.76134 * 220.99069 * 26 13 12 46 46 H 1.08998 * 113.86013 * 89.63623 * 26 13 12 47 47 H 1.07992 * 120.49879 * 180.25370 * 27 4 3 48 48 H 1.07991 * 119.55128 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5863 1.1886 -0.0058 5 6 4.3598 2.4520 -0.0125 6 8 3.7795 3.5197 -0.0181 7 7 5.7071 2.4174 -0.0124 8 6 6.4720 3.6669 -0.0185 9 1 5.9438 4.4191 0.5674 10 6 6.6310 4.1605 -1.4579 11 6 7.8534 3.4221 0.5923 12 6 7.8696 3.4793 2.1305 13 7 9.1350 4.2333 1.9904 14 6 9.1784 5.3669 2.9237 15 6 9.8113 4.9274 4.2188 16 8 10.1896 3.7826 4.3512 17 7 9.9581 5.8068 5.2296 18 6 10.5344 5.4070 6.4077 19 1 10.8711 4.3877 6.5255 20 6 10.6852 6.3135 7.4499 21 7 11.2371 5.9302 8.5793 22 14 10.1034 8.0767 7.2459 23 1 8.6893 8.1855 7.6859 24 1 10.9493 8.9758 8.0714 25 1 10.2092 8.4707 5.8180 26 6 8.7433 4.6775 0.6345 27 6 4.2343 -0.0507 0.0006 28 6 3.4741 -1.2039 0.0067 29 7 2.1571 -1.1465 0.0060 30 1 -0.3633 0.0054 1.0277 31 1 -0.3634 0.8872 -0.5185 32 1 -0.3634 -0.8927 -0.5092 33 1 1.6493 2.1378 -0.0004 34 1 6.1704 1.5652 -0.0076 35 1 7.1592 3.4083 -2.0437 36 1 5.6470 4.3348 -1.8931 37 1 7.2005 5.0899 -1.4624 38 1 8.3513 2.5451 0.1788 39 1 7.0547 4.0643 2.5568 40 1 7.9890 2.5053 2.6049 41 1 9.7664 6.1744 2.4874 42 1 8.1647 5.7185 3.1158 43 1 9.6560 6.7224 5.1236 44 1 11.3427 6.5630 9.3068 45 1 9.5608 4.6608 -0.0863 46 1 8.1840 5.6129 0.6214 47 1 5.3129 -0.1052 0.0006 48 1 3.9653 -2.1656 0.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485531227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:24 Heat of formation + Delta-G solvation = -24.390645 kcal Electronic energy + Delta-G solvation = -29185.713079 eV Core-core repulsion = 25047.694209 eV Total energy + Delta-G solvation = -4138.018870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88427 -41.31474 -40.25098 -39.62756 -36.52513 -35.95290 -34.41630 -33.76992 -33.45171 -32.34165 -30.62609 -28.60909 -27.68055 -26.95431 -26.01500 -25.17410 -23.84634 -22.78879 -21.58300 -21.25337 -20.60196 -20.23911 -18.86278 -18.01450 -17.79507 -16.99752 -16.92908 -16.74230 -16.53391 -16.41610 -16.22515 -16.02770 -15.61142 -15.32205 -15.13256 -14.89580 -14.83259 -14.43251 -14.31900 -14.17918 -13.93611 -13.69669 -13.46019 -13.29508 -13.12650 -13.04724 -12.75939 -12.71941 -12.67651 -12.43324 -12.00584 -11.87491 -11.83633 -11.66509 -11.51959 -11.35976 -11.00611 -10.55119 -10.46547 -10.25777 -10.24521 -9.99976 -9.62623 -8.42694 -6.03445 -0.38032 0.03711 1.28103 1.33657 1.42556 1.75603 1.91597 1.95455 2.21286 2.63209 2.76738 3.12808 3.17489 3.31007 3.34724 3.50273 3.61122 3.70584 3.91903 4.00668 4.05358 4.13811 4.21543 4.27519 4.38108 4.40082 4.43603 4.46142 4.50586 4.56628 4.70478 4.75631 4.76462 4.79584 4.85155 4.91108 4.95357 5.03584 5.14744 5.17185 5.29906 5.42197 5.45775 5.52379 5.60780 5.90130 6.03123 6.37428 6.58751 6.87406 6.89059 7.02953 7.38940 7.96986 8.75093 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.001942 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.864894 B =14414.374968 C =15106.253550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.114 3.886 3 C -0.129 4.129 4 C -0.099 4.099 5 C 0.559 3.441 6 O -0.569 6.569 7 N -0.702 5.702 8 C 0.155 3.845 9 H 0.073 0.927 10 C -0.156 4.156 11 C -0.100 4.100 12 C 0.007 3.993 13 N -0.486 5.486 14 C 0.019 3.981 15 C 0.451 3.549 16 O -0.609 6.609 17 N -0.595 5.595 18 C -0.328 4.328 19 H 0.054 0.946 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.231 1.231 26 C 0.019 3.981 27 C -0.141 4.141 28 C 0.098 3.902 29 N -0.493 5.493 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.415 0.585 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.170 0.830 48 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.439 -5.695 -25.891 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.023 4.023 3 C -0.150 4.150 4 C -0.110 4.110 5 C 0.346 3.654 6 O -0.448 6.448 7 N -0.354 5.354 8 C 0.050 3.950 9 H 0.091 0.909 10 C -0.214 4.214 11 C -0.119 4.119 12 C -0.122 4.122 13 N -0.208 5.208 14 C -0.112 4.112 15 C 0.239 3.761 16 O -0.493 6.493 17 N -0.237 5.237 18 C -0.457 4.457 19 H 0.072 0.928 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.154 1.154 26 C -0.110 4.110 27 C -0.161 4.161 28 C -0.059 4.059 29 N -0.204 5.204 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.127 0.873 46 H 0.109 0.891 47 H 0.187 0.813 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.322 -6.729 -25.482 32.098 hybrid contribution 0.076 1.639 0.950 1.896 sum -18.246 -5.090 -24.532 30.994 Atomic orbital electron populations 1.20821 0.86661 1.04556 1.04105 1.21694 0.98619 0.87446 0.94512 1.22215 0.93640 1.00353 0.98809 1.20431 0.94660 0.93787 1.02113 1.18380 0.82805 0.88338 0.75885 1.90766 1.70699 1.32158 1.51227 1.45886 1.05087 1.10883 1.73502 1.21041 0.90156 0.85806 0.97961 0.90888 1.22099 1.01984 1.02829 0.94496 1.23150 0.94346 1.00819 0.93587 1.24043 0.90963 0.99986 0.97231 1.68337 1.33473 1.16562 1.02462 1.22459 1.01554 0.95834 0.91398 1.20959 0.83211 0.85737 0.86188 1.90530 1.54298 1.21386 1.83071 1.42077 1.56508 1.12116 1.12991 1.18993 1.37651 0.98130 0.90935 0.92803 1.26124 0.96801 1.04512 0.94073 1.69807 1.44348 1.38128 1.05264 0.85365 0.79174 0.76403 0.80583 1.18283 1.19883 1.15427 1.24090 0.98747 0.97097 0.91054 1.22634 1.03065 0.91532 0.98835 1.23303 0.88749 0.99904 0.93929 1.67474 1.11465 1.29848 1.11584 0.89439 0.89095 0.89916 0.83830 0.74738 0.90690 0.93637 0.89778 0.86118 0.91458 0.91240 0.86302 0.89664 0.77590 0.91154 0.87254 0.89144 0.81263 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.16 71.24 0.72 -0.40 16 2 C 0.11 1.89 6.78 42.55 0.29 2.17 16 3 C -0.13 -2.31 9.31 22.63 0.21 -2.10 16 4 C -0.10 -1.70 5.91 -19.88 -0.12 -1.82 16 5 C 0.56 11.12 7.76 86.87 0.67 11.80 16 6 O -0.57 -15.58 16.11 -3.78 -0.06 -15.64 16 7 N -0.70 -10.03 5.04 -445.12 -2.24 -12.27 16 8 C 0.15 2.32 2.41 44.99 0.11 2.43 16 9 H 0.07 1.43 7.37 -2.39 -0.02 1.41 16 10 C -0.16 -1.89 9.29 71.98 0.67 -1.23 16 11 C -0.10 -1.57 3.49 -10.15 -0.04 -1.60 16 12 C 0.01 0.17 7.51 86.40 0.65 0.82 16 13 N -0.49 -13.74 5.65 -912.44 -5.16 -18.89 16 14 C 0.02 0.59 5.28 85.56 0.45 1.04 16 15 C 0.45 20.83 7.83 87.66 0.69 21.52 16 16 O -0.61 -34.64 16.01 -3.06 -0.05 -34.69 16 17 N -0.59 -28.59 5.09 -306.98 -1.56 -30.15 16 18 C -0.33 -19.53 10.16 84.04 0.85 -18.68 16 19 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 20 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 21 N -0.93 -56.99 13.96 21.66 0.30 -56.68 16 22 Si 0.96 39.27 27.74 68.60 1.90 41.17 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 26 C 0.02 0.31 6.57 86.41 0.57 0.88 16 27 C -0.14 -1.65 9.62 22.63 0.22 -1.43 16 28 C 0.10 1.24 11.17 84.67 0.95 2.18 16 29 N -0.49 -8.55 10.25 -184.05 -1.89 -10.43 16 30 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.14 2.54 7.74 -2.91 -0.02 2.52 16 34 H 0.41 3.63 6.74 -92.71 -0.63 3.00 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.82 7.43 -2.39 -0.02 0.80 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.68 7.29 -2.39 -0.02 1.66 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.12 2.95 8.08 -2.39 -0.02 2.93 16 42 H 0.09 2.18 7.38 -2.38 -0.02 2.16 16 43 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 44 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 47 H 0.17 0.82 6.54 -2.91 -0.02 0.80 16 48 H 0.19 1.17 8.06 -2.92 -0.02 1.14 16 Total: -1.00 -87.85 400.32 -1.61 -89.46 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -0.22 Total: 33.03 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 7.36 Total: 15.11 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -10.54 Total: -128.44 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.11 Total: -50.33 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal Total: -87.85 -1.61 -89.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485531227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.067 kcal (2) G-P(sol) polarization free energy of solvation -87.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds