Wall clock time and date at job start Sat Apr 11 2020 07:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36332 * 119.74305 * 2 1 4 4 C 1.47520 * 120.16661 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00058 * 6.78944 * 4 3 2 6 6 N 1.34772 * 119.99814 * 186.79094 * 4 3 2 7 7 C 1.46502 * 120.00021 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47119 * 179.97438 * 7 6 4 9 9 O 1.42908 * 109.47055 * 65.00065 * 8 7 6 10 10 C 1.42892 * 113.99594 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46882 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46784 * 64.99798 * 11 10 9 13 13 C 1.46495 * 120.00125 * 270.00304 * 12 11 10 14 14 C 1.36941 * 119.99536 * 90.00304 * 12 11 10 15 15 H 1.07991 * 120.00421 * 23.81233 * 14 12 11 16 16 C 1.38815 * 119.99357 * 203.81754 * 14 12 11 17 17 N 1.31619 * 120.00684 * 14.37500 * 16 14 12 18 18 Si 1.86803 * 119.99566 * 194.37246 * 16 14 12 19 19 H 1.48500 * 109.47250 * 60.00432 * 18 16 14 20 20 H 1.48505 * 109.46895 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47223 * 299.99863 * 18 16 14 22 22 C 1.46494 * 119.66406 * 180.02562 * 3 2 1 23 23 C 1.35539 * 119.04895 * 0.02562 * 22 3 2 24 24 C 1.41223 * 119.42676 * 359.97438 * 23 22 3 25 25 C 1.37914 * 132.97526 * 180.02562 * 24 23 22 26 26 N 1.33447 * 107.66068 * 179.75217 * 25 24 23 27 27 C 1.30743 * 109.93567 * 0.37716 * 26 25 24 28 28 N 1.35914 * 109.21063 * 359.61687 * 27 26 25 29 29 H 1.09001 * 109.47397 * 277.02354 * 1 2 3 30 30 H 1.09000 * 109.47512 * 37.03223 * 1 2 3 31 31 H 1.09002 * 109.46805 * 157.03109 * 1 2 3 32 32 H 0.97006 * 120.00244 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.46979 * 299.99750 * 7 6 4 34 34 H 1.08993 * 109.47176 * 60.00066 * 7 6 4 35 35 H 1.09002 * 109.46873 * 184.99658 * 8 7 6 36 36 H 1.09000 * 109.47103 * 305.00311 * 8 7 6 37 37 H 1.09000 * 109.47549 * 299.99309 * 10 9 8 38 38 H 1.09000 * 109.47356 * 60.00007 * 10 9 8 39 39 H 1.09002 * 109.46980 * 184.99390 * 11 10 9 40 40 H 1.08997 * 109.47293 * 305.00411 * 11 10 9 41 41 H 1.08989 * 109.47414 * 93.39045 * 13 12 11 42 42 H 1.09004 * 109.46727 * 213.38888 * 13 12 11 43 43 H 1.08999 * 109.46765 * 333.38336 * 13 12 11 44 44 H 0.96994 * 120.00410 * 179.97438 * 17 16 14 45 45 H 1.07998 * 120.47890 * 180.02562 * 22 3 2 46 46 H 1.08004 * 120.28772 * 179.97438 * 23 22 3 47 47 H 1.08001 * 126.16759 * 359.97438 * 25 24 23 48 48 H 1.08008 * 125.39688 * 179.88666 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1837 0.0000 4 6 1.4437 2.4601 -0.0006 5 8 0.2341 2.4619 0.1235 6 7 2.1087 3.6242 -0.1386 7 6 1.3743 4.8918 -0.1386 8 6 2.3582 6.0512 -0.3085 9 8 2.9722 5.9700 -1.5964 10 6 3.9143 7.0121 -1.8577 11 6 4.5061 6.8256 -3.2564 12 7 3.4518 6.9957 -4.2593 13 6 2.6695 5.8393 -4.7031 14 6 3.1976 8.2357 -4.7819 15 1 3.9675 8.9929 -4.7748 16 6 1.9501 8.5193 -5.3206 17 7 0.9331 7.7181 -5.0834 18 14 1.7146 10.0382 -6.3822 19 1 2.6068 9.9575 -7.5665 20 1 0.3011 10.1141 -6.8310 21 1 2.0485 11.2507 -5.5925 22 6 3.6483 1.1817 -0.0006 23 6 4.3048 -0.0041 -0.0016 24 6 3.5647 -1.2069 -0.0016 25 6 3.9314 -2.5364 -0.0020 26 7 2.8133 -3.2648 0.0038 27 6 1.7689 -2.4783 -0.0003 28 7 2.1837 -1.1840 -0.0005 29 1 -0.3634 0.1257 1.0199 30 1 -0.3634 0.8204 -0.6189 31 1 -0.3633 -0.9462 -0.4010 32 1 3.0737 3.6227 -0.2379 33 1 0.6597 4.8977 -0.9616 34 1 0.8418 5.0032 0.8058 35 1 1.8238 6.9971 -0.2198 36 1 3.1250 5.9932 0.4639 37 1 3.4127 7.9782 -1.8010 38 1 4.7134 6.9736 -1.1174 39 1 5.2880 7.5669 -3.4218 40 1 4.9300 5.8251 -3.3411 41 1 1.7621 5.7631 -4.1043 42 1 2.4029 5.9623 -5.7528 43 1 3.2618 4.9322 -4.5825 44 1 0.0613 7.9165 -5.4595 45 1 4.1973 2.1117 -0.0002 46 1 5.3845 -0.0289 -0.0025 47 1 4.9414 -2.9190 -0.0029 48 1 0.7395 -2.8053 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485773290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:36 Heat of formation + Delta-G solvation = 38.153068 kcal Electronic energy + Delta-G solvation = -30006.285961 eV Core-core repulsion = 25870.979190 eV Total energy + Delta-G solvation = -4135.306771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.08486 -40.09137 -37.82183 -37.15662 -35.55874 -34.83990 -34.02291 -31.91951 -31.46692 -29.92470 -28.91879 -28.04478 -27.38965 -25.71501 -24.33198 -23.07801 -23.00678 -22.24514 -21.52733 -20.78682 -20.35686 -18.53041 -17.45274 -16.88112 -16.60616 -16.42081 -16.28311 -16.10439 -15.50220 -15.10365 -14.94690 -14.79916 -14.41281 -14.04235 -13.90818 -13.80545 -13.52252 -13.38841 -13.29880 -13.14933 -12.89556 -12.50829 -12.19367 -11.86207 -11.79409 -11.56733 -11.43776 -10.96419 -10.93520 -10.90161 -10.76692 -10.63090 -10.55341 -10.11417 -9.95744 -9.92057 -9.81315 -9.57909 -9.08371 -9.06256 -8.49982 -7.84001 -6.67929 -5.68120 -3.14767 0.33088 0.70475 2.09889 2.43375 2.82705 3.09164 3.28619 3.38710 3.45042 3.45608 3.95938 4.09291 4.22128 4.30412 4.43158 4.43975 4.52708 4.58376 5.00225 5.07923 5.15937 5.20048 5.22606 5.30490 5.39207 5.42740 5.53139 5.59307 5.61637 5.65113 5.80082 5.87153 5.96535 6.05351 6.15379 6.16366 6.19745 6.24246 6.36191 6.51743 6.73962 6.78406 6.91554 7.37008 7.44956 7.51666 7.73449 7.81488 7.92291 8.04763 8.44449 9.27920 9.91990 10.43113 11.35954 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002166 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.453520 B =12925.813101 C =13051.387983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.166 3.834 3 C -0.164 4.164 4 C 0.569 3.431 5 O -0.536 6.536 6 N -0.708 5.708 7 C 0.125 3.875 8 C 0.049 3.951 9 O -0.367 6.367 10 C 0.043 3.957 11 C 0.152 3.848 12 N -0.594 5.594 13 C 0.173 3.827 14 C -0.260 4.260 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.284 1.284 22 C -0.095 4.095 23 C -0.086 4.086 24 C 0.010 3.990 25 C -0.021 4.021 26 N -0.452 5.452 27 C 0.151 3.849 28 N -0.376 5.376 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.033 0.967 42 H 0.034 0.966 43 H -0.006 1.006 44 H 0.252 0.748 45 H 0.143 0.857 46 H 0.152 0.848 47 H 0.182 0.818 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 -15.310 14.927 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 C -0.171 4.171 4 C 0.356 3.644 5 O -0.416 6.416 6 N -0.359 5.359 7 C 0.002 3.998 8 C -0.028 4.028 9 O -0.286 6.286 10 C -0.037 4.037 11 C 0.024 3.976 12 N -0.317 5.317 13 C 0.028 3.972 14 C -0.390 4.390 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.544 5.544 18 Si 0.731 3.269 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.115 4.115 23 C -0.105 4.105 24 C -0.098 4.098 25 C -0.174 4.174 26 N -0.165 5.165 27 C -0.124 4.124 28 N -0.049 5.049 29 H 0.112 0.888 30 H 0.140 0.860 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.013 0.987 44 H 0.062 0.938 45 H 0.160 0.840 46 H 0.170 0.830 47 H 0.199 0.801 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.617 -16.343 14.791 22.337 hybrid contribution 0.359 2.028 -0.370 2.092 sum 3.976 -14.315 14.421 20.705 Atomic orbital electron populations 1.21368 0.86279 1.04816 1.05554 1.20418 0.95509 0.82842 0.95091 1.20183 0.93719 0.92372 1.10777 1.17544 0.86721 0.83155 0.76998 1.90749 1.13439 1.86946 1.50421 1.45742 1.11410 1.05612 1.73155 1.21465 0.94646 0.80906 1.02789 1.22612 0.95390 0.97677 0.87145 1.88013 1.58557 1.50176 1.31823 1.23521 0.90204 0.90684 0.99256 1.20902 0.91648 0.98759 0.86269 1.43861 1.39147 1.05460 1.43216 1.20672 0.93359 0.84835 0.98319 1.19124 0.95369 0.90597 1.33912 0.91701 1.25032 0.95211 0.97948 1.01299 1.70080 0.99824 1.38423 1.46043 0.86406 0.76762 0.82930 0.80811 1.21119 1.21687 1.21050 1.22076 0.91546 0.98741 0.99173 1.20388 1.00250 0.88849 1.01021 1.19778 0.82370 0.97191 1.10484 1.22595 0.98130 0.87005 1.09620 1.69975 0.97920 1.33018 1.15598 1.25128 1.00657 0.76403 1.10182 1.43002 1.07616 1.06627 1.47629 0.88837 0.85965 0.91547 0.76079 0.89749 0.90237 0.91858 0.93793 0.93233 0.95746 0.92363 0.93885 0.94902 0.94713 0.98715 0.93807 0.83973 0.83049 0.80057 0.77059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.54 36.00 0.31 -0.85 16 2 C 0.17 1.80 6.83 -81.26 -0.55 1.24 16 3 C -0.16 -1.83 5.98 -103.48 -0.62 -2.44 16 4 C 0.57 7.25 7.68 -12.48 -0.10 7.15 16 5 O -0.54 -7.99 13.23 5.28 0.07 -7.92 16 6 N -0.71 -8.39 5.46 -61.35 -0.33 -8.73 16 7 C 0.13 1.62 6.06 -4.04 -0.02 1.60 16 8 C 0.05 0.67 6.07 37.16 0.23 0.89 16 9 O -0.37 -6.49 9.84 -35.23 -0.35 -6.83 16 10 C 0.04 0.76 6.28 37.16 0.23 0.99 16 11 C 0.15 3.02 6.12 -4.03 -0.02 3.00 16 12 N -0.59 -14.90 2.88 -181.12 -0.52 -15.42 16 13 C 0.17 4.37 8.63 59.84 0.52 4.89 16 14 C -0.26 -7.09 9.64 -15.06 -0.15 -7.24 16 15 H 0.07 1.71 7.86 -52.49 -0.41 1.30 16 16 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 17 N -0.90 -26.36 10.85 55.49 0.60 -25.76 16 18 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 C -0.09 -0.85 9.71 -37.22 -0.36 -1.21 16 23 C -0.09 -0.73 10.09 -39.41 -0.40 -1.13 16 24 C 0.01 0.10 6.78 -84.02 -0.57 -0.47 16 25 C -0.02 -0.21 12.00 -16.97 -0.20 -0.42 16 26 N -0.45 -5.20 11.19 -13.78 -0.15 -5.35 16 27 C 0.15 1.50 12.09 -89.37 -1.08 0.42 16 28 N -0.38 -4.02 2.94 -57.74 -0.17 -4.19 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.12 1.40 5.80 -51.93 -0.30 1.10 16 31 H 0.07 0.47 7.15 -51.93 -0.37 0.10 16 32 H 0.40 4.08 6.61 -40.82 -0.27 3.81 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 40 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 41 H 0.03 0.91 7.42 -51.94 -0.39 0.52 16 42 H 0.03 0.94 7.32 -51.93 -0.38 0.56 16 43 H -0.01 -0.13 7.85 -51.93 -0.41 -0.54 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.14 0.95 6.63 -52.49 -0.35 0.60 16 46 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 47 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.21 1.34 7.55 -52.48 -0.40 0.94 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -34.26 396.36 -9.83 -44.09 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.04 Total: 0.95 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -2.88 Total: 6.45 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.58 Total: -59.45 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.28 Total: -14.75 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.26 -9.83 -44.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485773290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.242 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds