Wall clock time and date at job start Sat Apr 11 2020 07:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36332 * 119.74305 * 2 1 4 4 C 1.47520 * 120.16661 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00058 * 6.78944 * 4 3 2 6 6 N 1.34772 * 119.99814 * 186.79094 * 4 3 2 7 7 C 1.46502 * 120.00021 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47119 * 179.97438 * 7 6 4 9 9 O 1.42908 * 109.47055 * 65.00065 * 8 7 6 10 10 C 1.42892 * 113.99594 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46882 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46784 * 64.99798 * 11 10 9 13 13 C 1.46495 * 120.00125 * 270.00304 * 12 11 10 14 14 C 1.36941 * 119.99536 * 90.00304 * 12 11 10 15 15 H 1.07991 * 120.00421 * 23.81233 * 14 12 11 16 16 C 1.38815 * 119.99357 * 203.81754 * 14 12 11 17 17 N 1.31619 * 120.00684 * 14.37500 * 16 14 12 18 18 Si 1.86803 * 119.99566 * 194.37246 * 16 14 12 19 19 H 1.48500 * 109.47250 * 60.00432 * 18 16 14 20 20 H 1.48505 * 109.46895 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47223 * 299.99863 * 18 16 14 22 22 C 1.46494 * 119.66406 * 180.02562 * 3 2 1 23 23 C 1.35539 * 119.04895 * 0.02562 * 22 3 2 24 24 C 1.41223 * 119.42676 * 359.97438 * 23 22 3 25 25 C 1.37914 * 132.97526 * 180.02562 * 24 23 22 26 26 N 1.33447 * 107.66068 * 179.75217 * 25 24 23 27 27 C 1.30743 * 109.93567 * 0.37716 * 26 25 24 28 28 N 1.35914 * 109.21063 * 359.61687 * 27 26 25 29 29 H 1.09001 * 109.47397 * 277.02354 * 1 2 3 30 30 H 1.09000 * 109.47512 * 37.03223 * 1 2 3 31 31 H 1.09002 * 109.46805 * 157.03109 * 1 2 3 32 32 H 0.97006 * 120.00244 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.46979 * 299.99750 * 7 6 4 34 34 H 1.08993 * 109.47176 * 60.00066 * 7 6 4 35 35 H 1.09002 * 109.46873 * 184.99658 * 8 7 6 36 36 H 1.09000 * 109.47103 * 305.00311 * 8 7 6 37 37 H 1.09000 * 109.47549 * 299.99309 * 10 9 8 38 38 H 1.09000 * 109.47356 * 60.00007 * 10 9 8 39 39 H 1.09002 * 109.46980 * 184.99390 * 11 10 9 40 40 H 1.08997 * 109.47293 * 305.00411 * 11 10 9 41 41 H 1.08989 * 109.47414 * 93.39045 * 13 12 11 42 42 H 1.09004 * 109.46727 * 213.38888 * 13 12 11 43 43 H 1.08999 * 109.46765 * 333.38336 * 13 12 11 44 44 H 0.96994 * 120.00410 * 179.97438 * 17 16 14 45 45 H 1.07998 * 120.47890 * 180.02562 * 22 3 2 46 46 H 1.08004 * 120.28772 * 179.97438 * 23 22 3 47 47 H 1.08001 * 126.16759 * 359.97438 * 25 24 23 48 48 H 1.08008 * 125.39688 * 179.88666 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1837 0.0000 4 6 1.4437 2.4601 -0.0006 5 8 0.2341 2.4619 0.1235 6 7 2.1087 3.6242 -0.1386 7 6 1.3743 4.8918 -0.1386 8 6 2.3582 6.0512 -0.3085 9 8 2.9722 5.9700 -1.5964 10 6 3.9143 7.0121 -1.8577 11 6 4.5061 6.8256 -3.2564 12 7 3.4518 6.9957 -4.2593 13 6 2.6695 5.8393 -4.7031 14 6 3.1976 8.2357 -4.7819 15 1 3.9675 8.9929 -4.7748 16 6 1.9501 8.5193 -5.3206 17 7 0.9331 7.7181 -5.0834 18 14 1.7146 10.0382 -6.3822 19 1 2.6068 9.9575 -7.5665 20 1 0.3011 10.1141 -6.8310 21 1 2.0485 11.2507 -5.5925 22 6 3.6483 1.1817 -0.0006 23 6 4.3048 -0.0041 -0.0016 24 6 3.5647 -1.2069 -0.0016 25 6 3.9314 -2.5364 -0.0020 26 7 2.8133 -3.2648 0.0038 27 6 1.7689 -2.4783 -0.0003 28 7 2.1837 -1.1840 -0.0005 29 1 -0.3634 0.1257 1.0199 30 1 -0.3634 0.8204 -0.6189 31 1 -0.3633 -0.9462 -0.4010 32 1 3.0737 3.6227 -0.2379 33 1 0.6597 4.8977 -0.9616 34 1 0.8418 5.0032 0.8058 35 1 1.8238 6.9971 -0.2198 36 1 3.1250 5.9932 0.4639 37 1 3.4127 7.9782 -1.8010 38 1 4.7134 6.9736 -1.1174 39 1 5.2880 7.5669 -3.4218 40 1 4.9300 5.8251 -3.3411 41 1 1.7621 5.7631 -4.1043 42 1 2.4029 5.9623 -5.7528 43 1 3.2618 4.9322 -4.5825 44 1 0.0613 7.9165 -5.4595 45 1 4.1973 2.1117 -0.0002 46 1 5.3845 -0.0289 -0.0025 47 1 4.9414 -2.9190 -0.0029 48 1 0.7395 -2.8053 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485773290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:35 Heat of formation + Delta-G solvation = 17.237140 kcal Electronic energy + Delta-G solvation = -30007.192944 eV Core-core repulsion = 25870.979190 eV Total energy + Delta-G solvation = -4136.213754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.82792 -41.05697 -39.08991 -38.02807 -37.19630 -35.99636 -34.85303 -33.40939 -32.68942 -31.10456 -29.88675 -29.32077 -28.26625 -27.78377 -25.22907 -24.78810 -23.77411 -23.23753 -22.30569 -22.11730 -21.68273 -19.32278 -18.75689 -18.32255 -17.56699 -17.39575 -17.30136 -17.13063 -16.84354 -16.40062 -16.14326 -15.79976 -15.57977 -15.27200 -15.19231 -14.95056 -14.61696 -14.56738 -14.36896 -14.04846 -13.96747 -13.77274 -13.53429 -13.16044 -12.95145 -12.66914 -12.62437 -12.53001 -12.49461 -12.45098 -12.33056 -12.02823 -11.78126 -11.67591 -11.66268 -11.41117 -10.91077 -10.59428 -10.43405 -10.35556 -10.04748 -8.70625 -8.56109 -7.77804 -5.25993 -0.46638 0.00436 1.32824 1.46581 1.49458 1.55604 1.59103 2.04802 2.18335 2.46918 2.53423 2.88869 3.24045 3.34920 3.51426 3.57813 3.68339 3.78297 3.78476 3.87550 3.98855 4.20321 4.35853 4.42515 4.48787 4.52643 4.56226 4.57359 4.61704 4.65068 4.70798 4.71512 4.89314 4.93238 4.95042 5.03159 5.10855 5.12898 5.23469 5.35106 5.39733 5.45955 5.56121 5.67695 5.81463 6.04310 6.36808 6.44522 6.49140 6.76970 7.10056 7.19533 7.93516 8.39456 9.24926 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002166 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.453520 B =12925.813101 C =13051.387983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.157 3.843 3 C -0.176 4.176 4 C 0.565 3.435 5 O -0.565 6.565 6 N -0.701 5.701 7 C 0.132 3.868 8 C 0.052 3.948 9 O -0.393 6.393 10 C 0.052 3.948 11 C 0.144 3.856 12 N -0.612 5.612 13 C 0.193 3.807 14 C -0.262 4.262 15 H 0.073 0.927 16 C -0.055 4.055 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.274 1.274 22 C -0.103 4.103 23 C -0.079 4.079 24 C -0.010 4.010 25 C -0.028 4.028 26 N -0.480 5.480 27 C 0.148 3.852 28 N -0.382 5.382 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.414 0.586 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.001 0.999 42 H 0.005 0.995 43 H 0.021 0.979 44 H 0.244 0.756 45 H 0.166 0.834 46 H 0.185 0.815 47 H 0.206 0.794 48 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -15.426 15.992 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.182 4.182 4 C 0.354 3.646 5 O -0.446 6.446 6 N -0.352 5.352 7 C 0.008 3.992 8 C -0.025 4.025 9 O -0.313 6.313 10 C -0.026 4.026 11 C 0.018 3.982 12 N -0.335 5.335 13 C 0.048 3.952 14 C -0.393 4.393 15 H 0.091 0.909 16 C -0.250 4.250 17 N -0.580 5.580 18 Si 0.793 3.207 19 H -0.206 1.206 20 H -0.226 1.226 21 H -0.199 1.199 22 C -0.123 4.123 23 C -0.098 4.098 24 C -0.118 4.118 25 C -0.179 4.179 26 N -0.194 5.194 27 C -0.127 4.127 28 N -0.055 5.055 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.251 0.749 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.019 0.981 42 H 0.023 0.977 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.183 0.817 46 H 0.202 0.798 47 H 0.222 0.778 48 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.088 -16.449 15.881 23.661 hybrid contribution -0.321 1.968 -0.647 2.097 sum 5.766 -14.481 15.234 21.795 Atomic orbital electron populations 1.21287 0.85819 1.05069 1.05376 1.20558 0.96026 0.83046 0.95170 1.20208 0.94968 0.91515 1.11528 1.17840 0.86503 0.83878 0.76426 1.90740 1.14752 1.87427 1.51712 1.45646 1.11851 1.04978 1.72761 1.21317 0.94177 0.81558 1.02118 1.22728 0.96146 0.97245 0.86393 1.87967 1.59056 1.49973 1.34265 1.23238 0.91086 0.89261 0.99059 1.21161 0.90478 1.00346 0.86221 1.44084 1.39854 1.04547 1.44987 1.20313 0.92806 0.86285 0.95824 1.19507 0.95322 0.91413 1.33035 0.90906 1.25798 0.95198 1.00941 1.03056 1.70265 0.99912 1.40369 1.47499 0.85392 0.76030 0.80031 0.79271 1.20554 1.22574 1.19923 1.22303 0.90430 1.00060 0.99497 1.20786 1.01752 0.87814 0.99489 1.20222 0.82526 0.98062 1.10954 1.23078 0.98923 0.87001 1.08926 1.69994 0.98775 1.33844 1.16746 1.25748 1.01675 0.76137 1.09118 1.43104 1.07951 1.06657 1.47815 0.88550 0.88228 0.89335 0.74861 0.93515 0.88554 0.92685 0.89960 0.96186 0.91051 0.91007 0.91977 0.98080 0.97662 0.96046 0.94673 0.81669 0.79814 0.77765 0.74421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.54 71.24 0.61 -1.63 16 2 C 0.16 3.32 6.83 41.41 0.28 3.60 16 3 C -0.18 -3.78 5.98 -19.12 -0.11 -3.90 16 4 C 0.57 14.35 7.68 86.69 0.67 15.02 16 5 O -0.56 -17.35 13.23 -4.03 -0.05 -17.40 16 6 N -0.70 -15.96 5.46 -466.28 -2.55 -18.51 16 7 C 0.13 3.39 6.06 86.38 0.52 3.92 16 8 C 0.05 1.32 6.07 71.98 0.44 1.75 16 9 O -0.39 -13.35 9.84 -148.98 -1.47 -14.81 16 10 C 0.05 1.73 6.28 71.98 0.45 2.18 16 11 C 0.14 5.38 6.12 86.38 0.53 5.91 16 12 N -0.61 -30.34 2.88 -726.93 -2.09 -32.44 16 13 C 0.19 9.89 8.63 127.77 1.10 10.99 16 14 C -0.26 -14.22 9.64 84.03 0.81 -13.41 16 15 H 0.07 3.76 7.86 -2.92 -0.02 3.73 16 16 C -0.05 -3.08 5.05 84.86 0.43 -2.65 16 17 N -0.93 -56.36 10.85 21.65 0.24 -56.13 16 18 Si 0.96 45.15 29.58 68.60 2.03 47.18 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 C -0.10 -1.63 9.71 23.80 0.23 -1.40 16 23 C -0.08 -1.15 10.09 22.38 0.23 -0.93 16 24 C -0.01 -0.20 6.78 38.81 0.26 0.07 16 25 C -0.03 -0.52 12.00 84.37 1.01 0.49 16 26 N -0.48 -10.52 11.19 -197.51 -2.21 -12.73 16 27 C 0.15 2.78 12.09 179.91 2.17 4.96 16 28 N -0.38 -7.79 2.94 -336.60 -0.99 -8.77 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.10 2.39 5.80 -2.39 -0.01 2.38 16 31 H 0.09 1.19 7.15 -2.39 -0.02 1.17 16 32 H 0.41 7.50 6.61 -92.70 -0.61 6.89 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 2.47 8.03 -2.39 -0.02 2.45 16 40 H 0.06 2.08 7.87 -2.39 -0.02 2.06 16 41 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 42 H 0.00 0.26 7.32 -2.38 -0.02 0.24 16 43 H 0.02 0.95 7.85 -2.39 -0.02 0.93 16 44 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.17 1.71 6.63 -2.91 -0.02 1.69 16 46 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 48 H 0.24 2.68 7.55 -2.91 -0.02 2.66 16 Total: -1.00 -76.10 396.36 2.90 -73.20 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.37 Total: 15.43 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 9.63 Total: 24.97 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -7.60 Total: -128.57 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.52 Total: -32.22 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.10 2.90 -73.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485773290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.434 kcal (2) G-P(sol) polarization free energy of solvation -76.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds