Wall clock time and date at job start Sat Apr 11 2020 07:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 N 1.46497 * 109.47432 * 180.02562 * 3 2 1 5 5 N 1.40076 * 126.04666 * 270.29182 * 4 3 2 6 6 C 1.30852 * 108.37284 * 180.16873 * 5 4 3 7 7 C 1.39755 * 108.32058 * 359.58929 * 6 5 4 8 8 C 1.35258 * 126.04886 * 89.99951 * 4 3 2 9 9 N 1.39471 * 126.21469 * 359.97438 * 8 4 3 10 10 C 1.34779 * 119.99983 * 179.97438 * 9 8 4 11 11 O 1.21290 * 119.99873 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00135 * 180.02562 * 10 9 8 13 13 N 1.46896 * 109.47515 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00139 * 293.95725 * 13 12 10 15 15 C 1.50693 * 109.46910 * 299.65157 * 14 13 12 16 16 H 1.08002 * 120.00260 * 356.87789 * 15 14 13 17 17 C 1.37881 * 120.00141 * 176.87670 * 15 14 13 18 18 N 1.31521 * 119.99653 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00393 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47213 * 59.99844 * 19 17 15 21 21 H 1.48498 * 109.47240 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47214 * 300.00167 * 19 17 15 23 23 C 1.46898 * 111.00397 * 169.99807 * 13 12 10 24 24 C 1.50693 * 109.47404 * 195.59402 * 23 13 12 25 25 C 1.34513 * 125.79204 * 89.71840 * 24 23 13 26 26 C 1.41381 * 106.84194 * 179.89276 * 25 24 23 27 27 C 1.34517 * 106.84196 * 0.36797 * 26 25 24 28 28 O 1.34303 * 108.41778 * 359.77434 * 27 26 25 29 29 H 1.09002 * 109.47290 * 60.00087 * 1 2 3 30 30 H 1.08998 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46886 * 299.99490 * 1 2 3 32 32 H 1.09000 * 109.47309 * 240.00238 * 2 1 3 33 33 H 1.09003 * 109.47589 * 120.00630 * 2 1 3 34 34 H 1.09003 * 109.46747 * 60.00425 * 3 2 1 35 35 H 1.09006 * 109.47367 * 300.00252 * 3 2 1 36 36 H 1.07991 * 125.83421 * 179.84910 * 6 5 4 37 37 H 1.08008 * 126.08115 * 180.30053 * 7 6 5 38 38 H 0.97005 * 120.00289 * 0.02562 * 9 8 4 39 39 H 1.09002 * 109.47189 * 300.00765 * 12 10 9 40 40 H 1.09004 * 109.47183 * 59.99687 * 12 10 9 41 41 H 1.08998 * 109.46890 * 59.65046 * 14 13 12 42 42 H 1.09001 * 109.47285 * 179.64800 * 14 13 12 43 43 H 0.96994 * 119.99813 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.47133 * 315.59516 * 23 13 12 45 45 H 1.09003 * 109.46451 * 75.59073 * 23 13 12 46 46 H 1.07995 * 126.57978 * 0.02562 * 25 24 23 47 47 H 1.08005 * 126.58035 * 180.16747 * 26 25 24 48 48 H 1.07997 * 125.79166 * 179.75267 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3297 1.4366 1.1316 6 6 5.5763 1.4424 0.7338 7 6 5.5915 1.4426 -0.6636 8 6 4.3005 1.4427 -1.0945 9 7 3.8750 1.4424 -2.4228 10 6 4.7811 1.4431 -3.4206 11 8 5.9664 1.4436 -3.1634 12 6 4.3214 1.4433 -4.8558 13 7 5.4909 1.4448 -5.7446 14 6 6.2459 2.6987 -5.6192 15 6 5.3601 3.8581 -5.9959 16 1 4.3546 3.6779 -6.3464 17 6 5.8333 5.1491 -5.8931 18 7 7.0576 5.3686 -5.4657 19 14 4.7355 6.5863 -6.3606 20 1 3.5211 6.5802 -5.5060 21 1 5.4743 7.8589 -6.1610 22 1 4.3381 6.4624 -7.7861 23 6 5.0932 1.2069 -7.1386 24 6 6.3069 0.8360 -7.9510 25 6 6.7744 -0.4107 -8.1427 26 6 7.9199 -0.2969 -8.9635 27 6 8.0887 1.0132 -9.2176 28 8 7.1088 1.6946 -8.6018 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6766 1.9564 -0.8900 36 1 6.4448 1.4423 1.3757 37 1 6.4713 1.4422 -1.2902 38 1 2.9270 1.4423 -2.6285 39 1 3.7215 0.5532 -5.0453 40 1 3.7207 2.3331 -5.0448 41 1 6.5829 2.8184 -4.5896 42 1 7.1098 2.6707 -6.2834 43 1 7.3906 6.2767 -5.3937 44 1 4.3685 0.3934 -7.1759 45 1 4.6446 2.1121 -7.5479 46 1 6.3540 -1.3235 -7.7474 47 1 8.5421 -1.1063 -9.3159 48 1 8.8785 1.4440 -9.8152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602784119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:00 Heat of formation + Delta-G solvation = 53.581956 kcal Electronic energy + Delta-G solvation = -30614.989249 eV Core-core repulsion = 26480.351525 eV Total energy + Delta-G solvation = -4134.637724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.29467 -42.51102 -40.68277 -38.08811 -36.45741 -35.70710 -34.60609 -33.73918 -32.28172 -31.75688 -30.49913 -29.18608 -27.77452 -27.15424 -25.96969 -23.83920 -23.05398 -22.61064 -22.41566 -21.51127 -21.01851 -20.85077 -19.24066 -18.69613 -17.90702 -17.64684 -17.06283 -16.87338 -16.68319 -16.43068 -15.94215 -15.89896 -15.64278 -15.47582 -15.17840 -14.85097 -14.77881 -14.34624 -14.11386 -13.94832 -13.53096 -13.44623 -13.37194 -13.13780 -13.09361 -12.89657 -12.82956 -12.66452 -12.54482 -12.32037 -12.28194 -12.01641 -11.98873 -11.81227 -11.66715 -11.62923 -10.77300 -10.67947 -10.47648 -9.93094 -9.31164 -9.11964 -8.99170 -8.10714 -6.30399 0.71241 0.92634 1.16045 1.36134 1.38937 1.45956 1.66889 1.84611 2.04879 2.15260 2.37626 2.39315 3.15870 3.45618 3.53887 3.71796 3.87386 3.97203 4.04639 4.21836 4.26232 4.32275 4.34930 4.39188 4.50259 4.56449 4.61199 4.66071 4.66276 4.76651 4.83376 4.98249 5.04003 5.11627 5.12554 5.16464 5.18496 5.29062 5.35707 5.38085 5.45814 5.76118 5.80167 5.85738 5.95636 6.00031 6.17179 6.28635 6.46303 6.48540 6.77461 6.90945 7.20423 7.40493 8.92794 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009316 B = 0.003253 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.858608 B = 8606.371283 C = 9887.007609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.120 3.880 4 N -0.383 5.383 5 N -0.315 5.315 6 C 0.060 3.940 7 C -0.319 4.319 8 C 0.314 3.686 9 N -0.639 5.639 10 C 0.522 3.478 11 O -0.521 6.521 12 C 0.051 3.949 13 N -0.529 5.529 14 C 0.203 3.797 15 C -0.553 4.553 16 H 0.072 0.928 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.954 3.046 20 H -0.262 1.262 21 H -0.292 1.292 22 H -0.267 1.267 23 C 0.134 3.866 24 C -0.011 4.011 25 C -0.208 4.208 26 C -0.222 4.222 27 C -0.065 4.065 28 O -0.201 6.201 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.208 0.792 37 H 0.144 0.856 38 H 0.426 0.574 39 H 0.146 0.854 40 H 0.085 0.915 41 H 0.018 0.982 42 H -0.011 1.011 43 H 0.260 0.740 44 H 0.133 0.867 45 H 0.049 0.951 46 H 0.165 0.835 47 H 0.172 0.828 48 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 -12.704 3.171 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.000 4.000 4 N -0.172 5.172 5 N -0.137 5.137 6 C -0.125 4.125 7 C -0.351 4.351 8 C 0.093 3.907 9 N -0.290 5.290 10 C 0.310 3.690 11 O -0.393 6.393 12 C -0.079 4.079 13 N -0.253 5.253 14 C 0.077 3.923 15 C -0.592 4.592 16 H 0.090 0.910 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.779 3.221 20 H -0.187 1.187 21 H -0.218 1.218 22 H -0.192 1.192 23 C 0.007 3.993 24 C -0.062 4.062 25 C -0.228 4.228 26 C -0.241 4.241 27 C -0.132 4.132 28 O -0.097 6.097 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.225 0.775 37 H 0.161 0.839 38 H 0.265 0.735 39 H 0.163 0.837 40 H 0.102 0.898 41 H 0.036 0.964 42 H 0.007 0.993 43 H 0.069 0.931 44 H 0.151 0.849 45 H 0.067 0.933 46 H 0.183 0.817 47 H 0.190 0.810 48 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -13.586 -12.645 4.448 19.085 hybrid contribution 0.176 1.744 -1.140 2.091 sum -13.410 -10.900 3.308 17.595 Atomic orbital electron populations 1.21682 0.92263 1.03101 1.03167 1.21885 0.98157 0.94590 1.02575 1.22153 0.72337 0.99645 1.05875 1.48903 1.07014 1.60023 1.01247 1.77311 1.02019 1.27889 1.06528 1.24097 0.95933 0.98009 0.94509 1.21672 0.96335 1.21300 0.95807 1.18077 0.91074 1.00225 0.81345 1.42841 1.11717 1.73467 1.00926 1.21279 0.85531 0.74381 0.87857 1.90657 1.18694 1.46088 1.83864 1.21887 0.93758 1.05334 0.86948 1.62135 1.21082 1.37008 1.05095 1.19425 0.92476 0.84326 0.96077 1.21964 1.00430 0.92405 1.44380 0.90975 1.25849 0.96114 1.02007 0.95009 1.70132 1.17841 1.21392 1.47419 0.85670 0.78989 0.78223 0.79189 1.18696 1.21782 1.19183 1.20550 0.90469 1.02170 0.86085 1.22687 0.96330 0.88349 0.98814 1.21801 0.99127 0.97636 1.04242 1.22133 1.00719 0.97191 1.04032 1.24681 0.94282 0.92224 1.02001 1.84136 1.33864 1.39242 1.52484 0.90934 0.91503 0.91790 0.91755 0.92420 0.87655 0.87331 0.77500 0.83862 0.73512 0.83668 0.89761 0.96405 0.99286 0.93099 0.84876 0.93308 0.81711 0.81011 0.76115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.13 -1.86 6.26 30.59 0.19 -1.67 16 3 C 0.12 2.01 6.25 86.38 0.54 2.55 16 4 N -0.38 -10.30 3.62 -344.99 -1.25 -11.55 16 5 N -0.32 -9.57 12.57 -57.10 -0.72 -10.29 16 6 C 0.06 1.84 12.01 85.21 1.02 2.86 16 7 C -0.32 -11.65 9.65 22.14 0.21 -11.43 16 8 C 0.31 9.94 7.66 131.32 1.01 10.94 16 9 N -0.64 -17.52 5.42 -308.56 -1.67 -19.20 16 10 C 0.52 18.55 7.52 87.66 0.66 19.21 16 11 O -0.52 -24.21 11.44 -3.06 -0.04 -24.25 16 12 C 0.05 1.59 5.24 85.56 0.45 2.04 16 13 N -0.53 -21.27 4.40 -909.97 -4.00 -25.27 16 14 C 0.20 10.86 4.63 85.55 0.40 11.26 16 15 C -0.55 -29.45 7.34 25.60 0.19 -29.26 16 16 H 0.07 3.49 5.95 -2.91 -0.02 3.47 16 17 C 0.01 0.53 5.46 84.65 0.46 0.99 16 18 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 19 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C 0.13 4.61 5.35 85.55 0.46 5.07 16 24 C -0.01 -0.43 6.10 24.83 0.15 -0.28 16 25 C -0.21 -6.60 10.81 22.19 0.24 -6.36 16 26 C -0.22 -6.50 10.91 22.19 0.24 -6.26 16 27 C -0.06 -2.10 12.09 66.97 0.81 -1.29 16 28 O -0.20 -8.42 10.06 -2.52 -0.03 -8.44 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.32 7.50 -2.38 -0.02 1.30 16 36 H 0.21 4.88 8.06 -2.92 -0.02 4.86 16 37 H 0.14 6.16 5.83 -2.91 -0.02 6.14 16 38 H 0.43 7.53 7.96 -92.70 -0.74 6.80 16 39 H 0.15 2.81 7.87 -2.39 -0.02 2.79 16 40 H 0.08 2.62 6.37 -2.39 -0.02 2.60 16 41 H 0.02 1.10 5.88 -2.39 -0.01 1.09 16 42 H -0.01 -0.68 6.91 -2.39 -0.02 -0.70 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.13 3.17 7.82 -2.38 -0.02 3.15 16 45 H 0.05 1.84 6.38 -2.39 -0.02 1.83 16 46 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 47 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 48 H 0.22 5.36 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -83.50 396.69 2.61 -80.89 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.25 Total: 32.18 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 7.74 Total: -2.16 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -7.35 Total: -123.55 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.06 Total: -32.69 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -83.50 2.61 -80.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.470 kcal (2) G-P(sol) polarization free energy of solvation -83.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds