Wall clock time and date at job start Sat Apr 11 2020 07:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47494 * 2 1 4 4 N 1.46505 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.28387 * 119.10387 * 270.00070 * 4 3 2 6 6 C 1.31399 * 122.26956 * 179.97438 * 5 4 3 7 7 C 1.47892 * 119.89314 * 179.97438 * 6 5 4 8 8 O 1.21551 * 119.99543 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00273 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00228 * 180.27602 * 9 7 6 11 11 C 1.52998 * 109.47333 * 179.72609 * 10 9 7 12 12 H 1.09001 * 115.51330 * 330.41728 * 11 10 9 13 13 C 1.53004 * 117.44336 * 184.99751 * 11 10 9 14 14 H 1.08989 * 119.53641 * 4.11745 * 13 11 10 15 15 C 1.54389 * 118.11862 * 160.80749 * 13 11 10 16 16 N 1.48145 * 104.61683 * 87.19626 * 15 13 11 17 17 C 1.36940 * 127.84264 * 140.39285 * 16 15 13 18 18 H 1.07997 * 120.00410 * 195.59207 * 17 16 15 19 19 C 1.38813 * 119.99741 * 15.59199 * 17 16 15 20 20 N 1.31625 * 119.99894 * 9.09658 * 19 17 16 21 21 Si 1.86791 * 120.00062 * 189.09911 * 19 17 16 22 22 H 1.48500 * 109.47450 * 89.99525 * 21 19 17 23 23 H 1.48498 * 109.47287 * 209.99906 * 21 19 17 24 24 H 1.48506 * 109.47046 * 329.99917 * 21 19 17 25 25 C 1.48148 * 104.32186 * 320.40866 * 16 15 13 26 26 C 1.53004 * 117.44182 * 115.75595 * 11 10 9 27 27 H 1.08987 * 119.54401 * 355.88567 * 26 11 10 28 28 C 1.41580 * 120.21380 * 0.27645 * 6 5 4 29 29 C 1.36332 * 118.23207 * 359.47693 * 28 6 5 30 30 C 1.34612 * 119.10034 * 90.02486 * 4 3 2 31 31 O 1.21983 * 120.22443 * 0.02562 * 30 4 3 32 32 H 1.08993 * 109.47595 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47052 * 300.00384 * 1 2 3 34 34 H 1.09004 * 109.47121 * 59.99583 * 1 2 3 35 35 H 1.09003 * 109.47052 * 239.99616 * 2 1 3 36 36 H 1.09004 * 109.47121 * 120.00417 * 2 1 3 37 37 H 1.09006 * 109.47345 * 60.00517 * 3 2 1 38 38 H 1.09001 * 109.47473 * 299.99839 * 3 2 1 39 39 H 0.97003 * 119.99889 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.46884 * 299.72491 * 10 9 7 41 41 H 1.08998 * 109.47118 * 59.72282 * 10 9 7 42 42 H 1.09006 * 110.40275 * 205.97206 * 15 13 11 43 43 H 1.08996 * 110.41228 * 328.40652 * 15 13 11 44 44 H 0.96994 * 119.99554 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.40875 * 280.80368 * 25 16 15 46 46 H 1.09002 * 110.50501 * 158.42441 * 25 16 15 47 47 H 1.07997 * 120.88382 * 179.72197 * 28 6 5 48 48 H 1.07999 * 121.03113 * 180.21216 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 7 4.1291 1.4424 1.1226 6 6 5.4410 1.4419 1.1958 7 6 6.1056 1.4426 2.5169 8 8 7.3191 1.4425 2.5868 9 7 5.3658 1.4433 3.6434 10 6 6.0241 1.4502 4.9522 11 6 4.9647 1.4565 6.0560 12 1 4.0226 1.9410 5.7997 13 6 5.4524 1.5824 7.5007 14 1 6.5139 1.7304 7.6985 15 6 4.4401 2.0391 8.5732 16 7 3.7845 0.7896 9.0246 17 6 3.4259 0.4423 10.2997 18 1 3.1883 -0.5851 10.5330 19 6 3.3678 1.4108 11.2925 20 7 3.4805 2.6838 10.9774 21 14 3.1299 0.9074 13.0755 22 1 4.4550 0.6912 13.7100 23 1 2.4034 1.9808 13.8002 24 1 2.3420 -0.3501 13.1340 25 6 3.6050 0.0009 7.7834 26 6 4.9018 0.2385 6.9799 27 1 5.5531 -0.6144 6.7898 28 6 6.2205 1.4470 0.0138 29 6 5.5728 1.4415 -1.1858 30 6 4.1602 1.4426 -1.1753 31 8 3.5384 1.4434 -2.2247 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6768 1.9563 0.8901 38 1 1.6768 1.9563 -0.8900 39 1 4.3974 1.4430 3.5877 40 1 6.6461 0.5605 5.0506 41 1 6.6467 2.3404 5.0410 42 1 4.9574 2.5184 9.4044 43 1 3.7063 2.7179 8.1388 44 1 3.4403 3.3604 11.6712 45 1 2.7408 0.3614 7.2256 46 1 3.4911 -1.0577 8.0168 47 1 7.2994 1.4511 0.0613 48 1 6.1227 1.4416 -2.1153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979044855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:57:15 Heat of formation + Delta-G solvation = 51.270443 kcal Electronic energy + Delta-G solvation = -29399.755837 eV Core-core repulsion = 25265.017878 eV Total energy + Delta-G solvation = -4134.737959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60439 -39.98093 -38.81988 -38.08178 -36.28536 -35.16604 -33.64759 -33.44056 -31.86879 -30.79113 -28.29195 -27.36156 -27.13929 -25.70562 -24.80740 -24.13332 -22.22125 -21.51946 -21.18937 -20.16854 -19.32287 -18.87644 -18.46672 -17.14922 -16.97229 -16.84435 -16.48809 -16.03447 -15.44178 -15.41787 -15.04674 -14.66965 -14.26605 -14.07019 -13.97379 -13.87591 -13.60656 -13.39225 -13.06631 -12.82060 -12.74946 -12.70174 -12.56434 -12.08567 -11.90893 -11.86208 -11.29797 -11.26760 -11.14315 -10.87009 -10.86758 -10.70015 -10.58412 -10.33257 -10.20472 -10.15197 -9.77314 -9.51589 -9.21216 -9.10112 -8.95174 -8.66834 -6.89855 -5.82725 -3.17107 -0.02418 0.70918 1.60996 2.43806 2.77360 3.13727 3.36330 3.41770 3.43517 3.47899 4.07504 4.16907 4.29799 4.32662 4.37429 4.43595 4.47027 4.65877 4.83136 4.95073 4.96980 5.14201 5.19153 5.23892 5.28005 5.34628 5.38478 5.42647 5.45779 5.53809 5.55054 5.60975 5.73217 5.79040 5.82355 5.86033 5.92681 6.18786 6.20684 6.51086 6.62429 6.66946 6.88338 7.03424 7.23155 7.32701 7.50222 7.52136 7.69048 7.87975 8.18139 9.08276 9.70985 10.47753 11.31584 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.002022 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.017935 B =13841.444589 C =15234.865815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.106 3.894 4 N -0.333 5.333 5 N -0.177 5.177 6 C 0.019 3.981 7 C 0.586 3.414 8 O -0.529 6.529 9 N -0.702 5.702 10 C 0.153 3.847 11 C -0.151 4.151 12 H 0.104 0.896 13 C -0.160 4.160 14 H 0.104 0.896 15 C 0.183 3.817 16 N -0.594 5.594 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.154 3.846 26 C -0.171 4.171 27 H 0.103 0.897 28 C -0.030 4.030 29 C -0.193 4.193 30 C 0.480 3.520 31 O -0.524 6.524 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.410 0.590 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.024 0.976 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.050 0.950 47 H 0.164 0.836 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 -2.273 -24.147 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.013 4.013 4 N -0.155 5.155 5 N -0.008 5.008 6 C -0.153 4.153 7 C 0.369 3.631 8 O -0.404 6.404 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.171 4.171 12 H 0.122 0.878 13 C -0.181 4.181 14 H 0.122 0.878 15 C 0.058 3.942 16 N -0.318 5.318 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.027 3.973 26 C -0.191 4.191 27 H 0.121 0.879 28 C -0.053 4.053 29 C -0.223 4.223 30 C 0.279 3.721 31 O -0.402 6.402 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.246 0.754 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.042 0.958 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.068 0.932 47 H 0.182 0.818 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.362 -2.182 -23.897 24.000 hybrid contribution 0.118 -0.212 0.268 0.361 sum 0.480 -2.394 -23.630 23.756 Atomic orbital electron populations 1.21673 0.93694 1.02775 1.02481 1.21865 0.97447 0.94975 1.03406 1.22275 0.73167 0.99943 1.05929 1.46946 1.09756 1.56317 1.02478 1.71042 1.11165 1.05692 1.12897 1.21794 0.88150 1.08966 0.96347 1.17174 0.86337 0.77395 0.82223 1.90837 1.12639 1.50525 1.86382 1.45905 1.11086 1.72877 1.05451 1.20992 0.94226 1.02562 0.79200 1.22525 0.99874 1.03468 0.91185 0.87803 1.24243 1.00653 1.01025 0.92149 0.87795 1.21071 0.91223 0.88630 0.93306 1.45205 1.68170 1.16745 1.01650 1.19001 1.40151 0.93202 0.83181 0.90569 1.24899 1.01591 0.95149 0.98654 1.69895 1.55639 0.98871 1.31783 0.86108 0.77730 0.77387 0.84463 1.21474 1.21652 1.20547 1.21138 0.92249 0.95959 0.87917 1.24002 1.01792 0.91445 1.01845 0.87860 1.22250 1.03156 0.89650 0.90270 1.22700 0.92658 1.06414 1.00493 1.18130 0.90122 0.79861 0.84009 1.90980 1.69286 1.50606 1.29336 0.91752 0.91881 0.92198 0.91189 0.90750 0.87554 0.87297 0.75380 0.90914 0.90580 0.89164 0.95843 0.93539 0.95838 0.93198 0.81799 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.14 -0.91 6.26 -26.74 -0.17 -1.08 16 3 C 0.11 0.74 5.55 -4.04 -0.02 0.72 16 4 N -0.33 -2.99 3.22 -63.33 -0.20 -3.20 16 5 N -0.18 -1.61 10.10 33.42 0.34 -1.27 16 6 C 0.02 0.18 6.84 -82.83 -0.57 -0.39 16 7 C 0.59 6.61 7.81 -12.31 -0.10 6.52 16 8 O -0.53 -7.36 16.38 5.32 0.09 -7.28 16 9 N -0.70 -7.49 5.54 -61.24 -0.34 -7.83 16 10 C 0.15 1.85 5.95 -4.04 -0.02 1.83 16 11 C -0.15 -2.14 5.39 -90.62 -0.49 -2.63 16 12 H 0.10 1.47 8.04 -51.93 -0.42 1.05 16 13 C -0.16 -2.85 6.85 -89.21 -0.61 -3.47 16 14 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 15 C 0.18 4.24 5.70 -2.41 -0.01 4.23 16 16 N -0.59 -14.81 3.38 -168.86 -0.57 -15.38 16 17 C -0.23 -6.21 10.35 -15.06 -0.16 -6.36 16 18 H 0.08 2.02 7.84 -52.49 -0.41 1.60 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 20 N -0.92 -26.34 10.87 55.49 0.60 -25.74 16 21 Si 0.91 21.60 29.56 -169.99 -5.03 16.58 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.15 3.08 7.04 -2.41 -0.02 3.06 16 26 C -0.17 -2.83 6.74 -89.21 -0.60 -3.44 16 27 H 0.10 1.58 8.12 -51.94 -0.42 1.15 16 28 C -0.03 -0.24 9.68 -39.00 -0.38 -0.61 16 29 C -0.19 -1.54 10.11 -39.12 -0.40 -1.94 16 30 C 0.48 4.91 7.47 -15.18 -0.11 4.80 16 31 O -0.52 -6.69 16.62 4.93 0.08 -6.61 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.76 7.36 -51.93 -0.38 0.37 16 39 H 0.41 3.83 7.74 -40.82 -0.32 3.51 16 40 H 0.07 0.91 7.94 -51.93 -0.41 0.49 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 2.36 6.51 -51.93 -0.34 2.02 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.16 1.06 7.72 -52.49 -0.41 0.65 16 48 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -32.65 401.23 -9.67 -42.32 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.31 Total: 1.79 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -3.38 Total: 0.56 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.17 Total: -53.41 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.17 Total: -13.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.65 -9.67 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979044855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.590 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds