Wall clock time and date at job start Sat Apr 11 2020 07:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99585 * 2 1 4 4 H 1.48506 * 109.46839 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47692 * 300.00132 * 3 2 1 6 6 H 1.48504 * 109.47414 * 60.00562 * 3 2 1 7 7 C 1.37875 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99928 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46964 * 299.99528 * 9 7 2 11 11 O 1.42906 * 109.47434 * 59.99901 * 9 7 2 12 12 C 1.53006 * 109.47087 * 179.97438 * 9 7 2 13 13 N 1.46897 * 109.47292 * 179.97438 * 12 9 7 14 14 C 1.46897 * 111.00156 * 190.00150 * 13 12 9 15 15 C 1.53241 * 109.33973 * 187.25232 * 14 13 12 16 16 N 1.47075 * 108.52064 * 306.17201 * 15 14 13 17 17 C 1.34780 * 120.87669 * 231.18923 * 16 15 14 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.52992 * 109.47482 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47592 * 179.97438 * 21 20 19 23 23 C 1.38234 * 119.99987 * 269.72960 * 22 21 20 24 24 C 1.38244 * 119.99665 * 179.76257 * 23 22 21 25 25 C 1.38232 * 119.99827 * 0.50888 * 24 23 22 26 26 C 1.38236 * 120.00310 * 359.74530 * 25 24 23 27 27 C 1.38228 * 119.99972 * 359.97438 * 26 25 24 28 28 C 1.47074 * 118.24014 * 51.45789 * 16 15 14 29 29 C 1.46904 * 110.99901 * 314.30218 * 13 12 9 30 30 H 0.96993 * 120.00266 * 359.97438 * 1 2 3 31 31 H 0.96702 * 114.00109 * 59.99698 * 11 9 7 32 32 H 1.09001 * 109.47045 * 59.99525 * 12 9 7 33 33 H 1.09003 * 109.46950 * 299.99947 * 12 9 7 34 34 H 1.09001 * 109.49120 * 67.28868 * 14 13 12 35 35 H 1.09003 * 109.48945 * 307.21315 * 14 13 12 36 36 H 1.09003 * 109.62612 * 186.45868 * 15 14 13 37 37 H 1.09003 * 109.62821 * 65.87958 * 15 14 13 38 38 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 39 39 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 40 40 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 41 41 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 42 42 H 1.09002 * 109.47103 * 300.00247 * 21 20 19 43 43 H 1.09001 * 109.47066 * 60.00169 * 21 20 19 44 44 H 1.07994 * 120.00394 * 359.97438 * 23 22 21 45 45 H 1.08005 * 119.99984 * 180.22963 * 24 23 22 46 46 H 1.08007 * 119.99862 * 179.72473 * 25 24 23 47 47 H 1.07998 * 119.99875 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.00253 * 179.97438 * 27 26 25 49 49 H 1.08994 * 109.63016 * 68.25422 * 28 16 15 50 50 H 1.09001 * 109.62513 * 188.83332 * 28 16 15 51 51 H 1.08997 * 109.49121 * 292.70801 * 29 13 12 52 52 H 1.09004 * 109.48974 * 52.76073 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6242 -2.5575 0.8880 11 8 0.4299 -2.5741 -1.1689 12 6 2.2454 -3.6621 -0.0027 13 7 1.5110 -4.9343 -0.0033 14 6 2.4175 -6.0656 0.2339 15 6 1.6501 -7.3787 0.0466 16 7 0.4558 -7.3483 0.9044 17 6 0.1812 -8.3662 1.7441 18 8 0.9230 -9.3241 1.7990 19 6 -1.0485 -8.3147 2.6138 20 6 -1.1249 -9.5839 3.4647 21 6 -2.3729 -9.5314 4.3481 22 6 -2.4485 -10.7819 5.1857 23 6 -3.1206 -11.8924 4.7106 24 6 -3.1858 -13.0412 5.4770 25 6 -2.5878 -13.0756 6.7228 26 6 -1.9202 -11.9632 7.2002 27 6 -1.8501 -10.8166 6.4314 28 6 -0.4340 -6.1805 0.8173 29 6 0.4185 -4.9119 0.9786 30 1 -0.4850 0.8400 0.0004 31 1 0.9223 -2.5282 -1.9999 32 1 2.8721 -3.6051 0.8873 33 1 2.8720 -3.6035 -0.8927 34 1 2.8061 -6.0132 1.2510 35 1 3.2448 -6.0234 -0.4746 36 1 2.2848 -8.2176 0.3321 37 1 1.3495 -7.4816 -0.9961 38 1 -0.9963 -7.4425 3.2655 39 1 -1.9359 -8.2455 1.9846 40 1 -1.1773 -10.4559 2.8126 41 1 -0.2376 -9.6536 4.0938 42 1 -2.3201 -8.6595 5.0001 43 1 -3.2605 -9.4616 3.7192 44 1 -3.5919 -11.8639 3.7393 45 1 -3.7077 -13.9101 5.1043 46 1 -2.6425 -13.9716 7.3235 47 1 -1.4534 -11.9901 8.1737 48 1 -1.3289 -9.9473 6.8045 49 1 -0.9311 -6.1705 -0.1526 50 1 -1.1779 -6.2269 1.6127 51 1 0.8350 -4.8756 1.9853 52 1 -0.2037 -4.0328 0.8105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929422385.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:57:42 Heat of formation + Delta-G solvation = -62.355222 kcal Electronic energy + Delta-G solvation = -29709.748614 eV Core-core repulsion = 25673.623820 eV Total energy + Delta-G solvation = -4036.124794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.21428 -39.52764 -38.10229 -35.82990 -35.14001 -33.86916 -32.14659 -31.79205 -31.15539 -30.78211 -29.06629 -27.50999 -26.32522 -24.10846 -23.67469 -22.86640 -22.84516 -21.27187 -20.89937 -20.04963 -18.70763 -17.42342 -17.07223 -16.72886 -16.17082 -15.90778 -15.37922 -15.32115 -14.95247 -14.72711 -14.59997 -14.46464 -14.25434 -13.85227 -13.74603 -13.65314 -13.64428 -13.49498 -13.03749 -12.85394 -12.59781 -12.28482 -12.06795 -11.87977 -11.74786 -11.40681 -11.33440 -11.20194 -11.13914 -11.11801 -10.99960 -10.96603 -10.86317 -10.72296 -10.59178 -10.11430 -9.73605 -9.19085 -9.02413 -8.95073 -8.66570 -8.57842 -8.13203 -7.79902 -6.07508 -4.25308 1.08425 1.13103 2.64068 3.00020 3.22490 3.31302 3.34331 3.51517 4.24619 4.38648 4.40974 4.47857 4.53972 4.72673 4.82838 4.83380 4.97177 5.03416 5.12996 5.15961 5.20494 5.23977 5.25212 5.33431 5.38064 5.40967 5.44459 5.48843 5.54777 5.65022 5.74689 5.79167 5.83547 5.91009 5.98273 6.04289 6.11417 6.12980 6.19720 6.21773 6.24287 6.29884 6.38236 6.39957 6.57057 6.74109 6.74876 7.36492 7.47045 7.55840 7.68283 7.78043 8.12787 8.18239 8.78033 9.37653 9.53830 10.96728 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.001727 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.456638 B =16206.533062 C =16949.874911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.556 6.556 12 C 0.030 3.970 13 N -0.527 5.527 14 C 0.039 3.961 15 C 0.118 3.882 16 N -0.612 5.612 17 C 0.513 3.487 18 O -0.551 6.551 19 C -0.141 4.141 20 C -0.096 4.096 21 C -0.084 4.084 22 C -0.077 4.077 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.117 4.117 28 C 0.112 3.888 29 C 0.036 3.964 30 H 0.260 0.740 31 H 0.346 0.654 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.029 0.971 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 -21.611 9.026 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.074 0.926 9 C 0.172 3.828 10 H 0.076 0.924 11 O -0.359 6.359 12 C -0.097 4.097 13 N -0.252 5.252 14 C -0.090 4.090 15 C -0.005 4.005 16 N -0.345 5.345 17 C 0.302 3.698 18 O -0.430 6.430 19 C -0.181 4.181 20 C -0.134 4.134 21 C -0.121 4.121 22 C -0.077 4.077 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.011 4.011 29 C -0.092 4.092 30 H 0.070 0.930 31 H 0.190 0.810 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.047 0.953 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.318 -22.114 9.054 24.717 hybrid contribution 1.431 1.270 0.446 1.965 sum -4.887 -20.844 9.500 23.422 Atomic orbital electron populations 1.70069 1.05891 1.26398 1.47096 1.25007 0.94702 0.99108 0.93763 0.86619 0.80229 0.83816 0.77724 1.19743 1.20812 1.20909 1.21676 0.93246 0.91546 1.54824 0.92645 1.19444 0.87831 0.88929 0.86607 0.92444 1.86520 1.37892 1.96291 1.15157 1.23081 0.97611 0.89293 0.99737 1.61970 1.11191 1.03179 1.48876 1.22475 0.95502 0.91230 0.99769 1.21683 0.86578 0.97773 0.94420 1.48290 1.25845 1.19924 1.40481 1.20696 0.87200 0.81892 0.80016 1.90669 1.50871 1.33186 1.68236 1.21728 0.96810 1.00749 0.98811 1.21298 0.97542 0.96885 0.97634 1.20672 0.98852 0.94967 0.97609 1.19910 0.97222 0.95765 0.94817 1.21082 0.99645 0.92983 0.99837 1.21152 0.99770 0.98025 0.94802 1.21142 0.98677 0.98467 0.96341 1.21154 0.99309 0.93411 0.99838 1.21096 0.99684 0.98418 0.94323 1.22067 0.92200 0.83987 1.02843 1.22683 0.94742 0.98534 0.93256 0.93000 0.81021 0.95510 0.91488 0.95162 0.90025 0.89275 0.90891 0.88739 0.88747 0.91087 0.91111 0.90708 0.90737 0.86073 0.86188 0.86300 0.86174 0.86050 0.90180 0.89747 0.95325 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 12.84 55.43 0.71 -23.71 16 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.57 -15.18 8.76 -34.44 -0.30 -15.48 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.23 5.44 2.12 -27.88 -0.06 5.39 16 10 H 0.06 1.47 6.18 -51.93 -0.32 1.15 16 11 O -0.56 -13.49 12.41 -35.23 -0.44 -13.92 16 12 C 0.03 0.59 4.87 -3.82 -0.02 0.57 16 13 N -0.53 -8.95 4.64 -234.02 -1.09 -10.04 16 14 C 0.04 0.58 5.58 -3.70 -0.02 0.55 16 15 C 0.12 1.61 6.60 -3.60 -0.02 1.58 16 16 N -0.61 -8.18 3.00 -172.19 -0.52 -8.70 16 17 C 0.51 6.88 7.71 -10.98 -0.08 6.79 16 18 O -0.55 -9.18 15.43 5.56 0.09 -9.09 16 19 C -0.14 -1.34 4.06 -27.88 -0.11 -1.45 16 20 C -0.10 -0.91 4.49 -26.74 -0.12 -1.03 16 21 C -0.08 -0.64 5.35 -27.89 -0.15 -0.79 16 22 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 23 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 27 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 28 C 0.11 1.42 6.53 -3.37 -0.02 1.40 16 29 C 0.04 0.59 5.06 -3.46 -0.02 0.57 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.35 7.65 9.04 45.56 0.41 8.06 16 32 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 36 H 0.09 1.23 7.06 -51.93 -0.37 0.86 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 39 H 0.09 0.73 7.99 -51.93 -0.41 0.32 16 40 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 46 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.08 0.84 6.02 -51.93 -0.31 0.53 16 51 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.11 2.06 5.58 -51.93 -0.29 1.77 16 LS Contribution 415.52 15.07 6.26 6.26 Total: -1.00 -31.74 415.52 -11.51 -43.25 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.98 Total: 8.28 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.52 Total: -7.92 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.89 Total: -42.45 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.35 Total: -23.01 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.74 -11.51 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929422385.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.103 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds