Wall clock time and date at job start Sat Apr 11 2020 07:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99585 * 2 1 4 4 H 1.48506 * 109.46839 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47692 * 300.00132 * 3 2 1 6 6 H 1.48504 * 109.47414 * 60.00562 * 3 2 1 7 7 C 1.37875 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99928 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46964 * 299.99528 * 9 7 2 11 11 O 1.42906 * 109.47434 * 59.99901 * 9 7 2 12 12 C 1.53006 * 109.47087 * 179.97438 * 9 7 2 13 13 N 1.46897 * 109.47292 * 179.97438 * 12 9 7 14 14 C 1.46897 * 111.00156 * 190.00150 * 13 12 9 15 15 C 1.53241 * 109.33973 * 187.25232 * 14 13 12 16 16 N 1.47075 * 108.52064 * 306.17201 * 15 14 13 17 17 C 1.34780 * 120.87669 * 231.18923 * 16 15 14 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.52992 * 109.47482 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47592 * 179.97438 * 21 20 19 23 23 C 1.38234 * 119.99987 * 269.72960 * 22 21 20 24 24 C 1.38244 * 119.99665 * 179.76257 * 23 22 21 25 25 C 1.38232 * 119.99827 * 0.50888 * 24 23 22 26 26 C 1.38236 * 120.00310 * 359.74530 * 25 24 23 27 27 C 1.38228 * 119.99972 * 359.97438 * 26 25 24 28 28 C 1.47074 * 118.24014 * 51.45789 * 16 15 14 29 29 C 1.46904 * 110.99901 * 314.30218 * 13 12 9 30 30 H 0.96993 * 120.00266 * 359.97438 * 1 2 3 31 31 H 0.96702 * 114.00109 * 59.99698 * 11 9 7 32 32 H 1.09001 * 109.47045 * 59.99525 * 12 9 7 33 33 H 1.09003 * 109.46950 * 299.99947 * 12 9 7 34 34 H 1.09001 * 109.49120 * 67.28868 * 14 13 12 35 35 H 1.09003 * 109.48945 * 307.21315 * 14 13 12 36 36 H 1.09003 * 109.62612 * 186.45868 * 15 14 13 37 37 H 1.09003 * 109.62821 * 65.87958 * 15 14 13 38 38 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 39 39 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 40 40 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 41 41 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 42 42 H 1.09002 * 109.47103 * 300.00247 * 21 20 19 43 43 H 1.09001 * 109.47066 * 60.00169 * 21 20 19 44 44 H 1.07994 * 120.00394 * 359.97438 * 23 22 21 45 45 H 1.08005 * 119.99984 * 180.22963 * 24 23 22 46 46 H 1.08007 * 119.99862 * 179.72473 * 25 24 23 47 47 H 1.07998 * 119.99875 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.00253 * 179.97438 * 27 26 25 49 49 H 1.08994 * 109.63016 * 68.25422 * 28 16 15 50 50 H 1.09001 * 109.62513 * 188.83332 * 28 16 15 51 51 H 1.08997 * 109.49121 * 292.70801 * 29 13 12 52 52 H 1.09004 * 109.48974 * 52.76073 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6242 -2.5575 0.8880 11 8 0.4299 -2.5741 -1.1689 12 6 2.2454 -3.6621 -0.0027 13 7 1.5110 -4.9343 -0.0033 14 6 2.4175 -6.0656 0.2339 15 6 1.6501 -7.3787 0.0466 16 7 0.4558 -7.3483 0.9044 17 6 0.1812 -8.3662 1.7441 18 8 0.9230 -9.3241 1.7990 19 6 -1.0485 -8.3147 2.6138 20 6 -1.1249 -9.5839 3.4647 21 6 -2.3729 -9.5314 4.3481 22 6 -2.4485 -10.7819 5.1857 23 6 -3.1206 -11.8924 4.7106 24 6 -3.1858 -13.0412 5.4770 25 6 -2.5878 -13.0756 6.7228 26 6 -1.9202 -11.9632 7.2002 27 6 -1.8501 -10.8166 6.4314 28 6 -0.4340 -6.1805 0.8173 29 6 0.4185 -4.9119 0.9786 30 1 -0.4850 0.8400 0.0004 31 1 0.9223 -2.5282 -1.9999 32 1 2.8721 -3.6051 0.8873 33 1 2.8720 -3.6035 -0.8927 34 1 2.8061 -6.0132 1.2510 35 1 3.2448 -6.0234 -0.4746 36 1 2.2848 -8.2176 0.3321 37 1 1.3495 -7.4816 -0.9961 38 1 -0.9963 -7.4425 3.2655 39 1 -1.9359 -8.2455 1.9846 40 1 -1.1773 -10.4559 2.8126 41 1 -0.2376 -9.6536 4.0938 42 1 -2.3201 -8.6595 5.0001 43 1 -3.2605 -9.4616 3.7192 44 1 -3.5919 -11.8639 3.7393 45 1 -3.7077 -13.9101 5.1043 46 1 -2.6425 -13.9716 7.3235 47 1 -1.4534 -11.9901 8.1737 48 1 -1.3289 -9.9473 6.8045 49 1 -0.9311 -6.1705 -0.1526 50 1 -1.1779 -6.2269 1.6127 51 1 0.8350 -4.8756 1.9853 52 1 -0.2037 -4.0328 0.8105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929422385.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:57:41 Heat of formation + Delta-G solvation = -82.300810 kcal Electronic energy + Delta-G solvation = -29710.613520 eV Core-core repulsion = 25673.623820 eV Total energy + Delta-G solvation = -4036.989700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.30185 -40.14525 -39.42986 -37.44290 -35.88235 -35.27141 -34.18870 -32.70732 -31.75482 -31.73362 -30.62751 -28.65818 -27.55523 -25.67151 -24.88361 -23.81543 -23.43039 -22.44148 -21.70067 -21.46185 -19.81197 -19.12804 -18.14953 -17.56943 -17.03315 -16.93909 -16.66321 -16.45391 -16.24614 -16.08892 -15.94747 -15.77475 -15.53942 -15.13275 -14.87216 -14.79894 -14.45871 -14.26307 -14.22345 -13.87929 -13.73174 -13.31920 -13.10293 -12.90356 -12.85906 -12.80719 -12.75981 -12.66436 -12.44713 -12.30220 -12.19567 -12.11857 -11.94683 -11.93095 -11.71287 -11.53728 -10.91296 -10.81905 -10.64721 -10.07981 -9.79143 -9.76665 -9.55852 -9.17440 -8.12970 -6.37331 0.48160 0.53016 1.39607 1.42377 1.52945 1.60627 1.97044 2.39050 2.90442 2.99469 3.14014 3.50902 3.77145 3.92171 3.95013 3.98593 4.13504 4.15845 4.17829 4.25060 4.25871 4.27477 4.35370 4.38970 4.43260 4.53597 4.57437 4.63173 4.65621 4.67293 4.72974 4.73938 4.79243 4.85749 4.88761 4.90191 5.07602 5.09062 5.12809 5.21058 5.25216 5.37845 5.46486 5.61086 5.62593 5.65659 5.77477 5.77503 5.94839 6.16385 6.17047 6.21886 6.42214 6.74724 7.13556 7.36465 7.62119 8.91195 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.001727 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.456638 B =16206.533062 C =16949.874911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.233 3.767 10 H 0.034 0.966 11 O -0.567 6.567 12 C 0.046 3.954 13 N -0.531 5.531 14 C 0.044 3.956 15 C 0.121 3.879 16 N -0.614 5.614 17 C 0.509 3.491 18 O -0.588 6.588 19 C -0.136 4.136 20 C -0.087 4.087 21 C -0.076 4.076 22 C -0.092 4.092 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.131 4.131 27 C -0.134 4.134 28 C 0.122 3.878 29 C 0.038 3.962 30 H 0.261 0.739 31 H 0.354 0.646 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.128 0.872 49 H 0.082 0.918 50 H 0.117 0.883 51 H 0.023 0.977 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -22.046 9.207 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.172 4.172 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.628 4.628 8 H 0.073 0.927 9 C 0.176 3.824 10 H 0.051 0.949 11 O -0.370 6.370 12 C -0.081 4.081 13 N -0.255 5.255 14 C -0.084 4.084 15 C -0.002 4.002 16 N -0.347 5.347 17 C 0.300 3.700 18 O -0.469 6.469 19 C -0.175 4.175 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.092 4.092 23 C -0.149 4.149 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.001 4.001 29 C -0.091 4.091 30 H 0.070 0.930 31 H 0.199 0.801 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.153 0.847 48 H 0.146 0.854 49 H 0.101 0.899 50 H 0.135 0.865 51 H 0.041 0.959 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.688 -22.551 9.232 25.268 hybrid contribution 1.562 1.345 0.399 2.099 sum -5.126 -21.206 9.631 23.848 Atomic orbital electron populations 1.70184 1.07360 1.27252 1.48353 1.25786 0.95463 1.02515 0.93444 0.85590 0.79111 0.79633 0.77691 1.19097 1.20488 1.20589 1.22076 0.93467 0.92999 1.54265 0.92697 1.19270 0.87804 0.89742 0.85630 0.94878 1.86474 1.38508 1.96377 1.15690 1.22720 0.96450 0.89356 0.99618 1.61958 1.11535 1.02595 1.49448 1.22494 0.95592 0.90685 0.99672 1.21620 0.86793 0.96806 0.94949 1.48380 1.25790 1.20119 1.40394 1.21380 0.87837 0.81052 0.79735 1.90655 1.52388 1.34582 1.69273 1.21794 0.95703 1.01303 0.98698 1.21178 0.97673 0.96389 0.97278 1.20627 0.98319 0.94918 0.97467 1.20120 0.97560 0.96408 0.95146 1.21338 0.99876 0.93190 1.00511 1.21460 0.99789 0.98565 0.94925 1.21454 0.98338 0.99121 0.96631 1.21438 0.99422 0.93426 1.00566 1.21327 1.00089 0.99061 0.94712 1.22049 0.91795 0.81905 1.04327 1.22618 0.94436 0.99321 0.92677 0.92965 0.80117 0.96112 0.91065 0.95961 0.88742 0.89503 0.90190 0.86983 0.86141 0.92570 0.93124 0.89772 0.89281 0.84990 0.84471 0.84473 0.84702 0.85422 0.89935 0.86479 0.95851 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.28 12.84 21.45 0.28 -51.01 16 2 C 0.03 1.66 5.40 84.65 0.46 2.12 16 3 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.59 -31.24 8.76 25.60 0.22 -31.01 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 9 C 0.23 11.19 2.12 29.85 0.06 11.25 16 10 H 0.03 1.76 6.18 -2.39 -0.01 1.74 16 11 O -0.57 -27.69 12.41 -148.98 -1.85 -29.54 16 12 C 0.05 1.81 4.87 86.31 0.42 2.23 16 13 N -0.53 -17.67 4.64 -894.29 -4.15 -21.82 16 14 C 0.04 1.25 5.58 86.38 0.48 1.73 16 15 C 0.12 3.15 6.60 86.35 0.57 3.72 16 16 N -0.61 -15.44 3.00 -817.07 -2.45 -17.89 16 17 C 0.51 12.93 7.71 87.66 0.68 13.60 16 18 O -0.59 -19.35 15.43 -3.03 -0.05 -19.39 16 19 C -0.14 -2.26 4.06 29.85 0.12 -2.13 16 20 C -0.09 -1.56 4.49 30.59 0.14 -1.42 16 21 C -0.08 -1.04 5.35 29.84 0.16 -0.88 16 22 C -0.09 -1.55 5.13 -19.86 -0.10 -1.65 16 23 C -0.13 -2.10 9.70 22.27 0.22 -1.88 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 25 C -0.14 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 28 C 0.12 2.86 6.53 86.50 0.57 3.42 16 29 C 0.04 1.21 5.06 86.54 0.44 1.65 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.35 15.68 9.04 -74.06 -0.67 15.01 16 32 H 0.02 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 2.41 8.11 -2.39 -0.02 2.39 16 36 H 0.09 2.33 7.06 -2.39 -0.02 2.32 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.11 1.53 7.67 -2.39 -0.02 1.51 16 39 H 0.12 1.43 7.99 -2.39 -0.02 1.41 16 40 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 41 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.08 0.99 8.09 -2.39 -0.02 0.98 16 43 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 44 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 47 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.12 1.98 6.02 -2.39 -0.01 1.96 16 51 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 52 H 0.08 3.13 5.58 -2.38 -0.01 3.12 16 Total: -1.00 -68.53 415.52 -0.65 -69.19 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.23 Total: 32.79 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.31 Total: -6.55 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -6.33 Total: -90.72 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.90 Total: -48.93 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.53 -0.65 -69.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929422385.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.112 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds