Wall clock time and date at job start Sat Apr 11 2020 07:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00373 * 2 1 4 4 H 1.48505 * 109.47315 * 240.00294 * 3 2 1 5 5 H 1.48500 * 109.47152 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47278 * 119.99805 * 3 2 1 7 7 C 1.37874 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00007 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46913 * 299.99771 * 9 7 2 11 11 O 1.42898 * 109.47584 * 59.99902 * 9 7 2 12 12 C 1.53000 * 109.47084 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.47236 * 180.90135 * 12 9 7 14 14 C 1.47010 * 111.00184 * 183.91828 * 13 12 9 15 15 C 1.53097 * 109.30085 * 182.42035 * 14 13 12 16 16 O 1.43022 * 109.27063 * 303.24852 * 15 14 13 17 17 C 1.42953 * 113.79054 * 58.50407 * 16 15 14 18 18 H 1.09005 * 109.51851 * 61.37342 * 17 16 15 19 19 C 1.53039 * 109.48447 * 181.64346 * 17 16 15 20 20 C 1.53039 * 109.34803 * 62.33582 * 19 17 16 21 21 N 1.46860 * 109.45402 * 59.18413 * 20 19 17 22 22 C 1.46898 * 110.99980 * 174.01739 * 21 20 19 23 23 C 1.50694 * 109.47353 * 293.95291 * 22 21 20 24 24 C 1.38236 * 120.00120 * 269.73206 * 23 22 21 25 25 C 1.38230 * 120.00123 * 179.78591 * 24 23 22 26 26 C 1.38239 * 119.99961 * 0.43720 * 25 24 23 27 27 C 1.38233 * 119.99831 * 359.81283 * 26 25 24 28 28 C 1.38230 * 120.00147 * 359.97438 * 27 26 25 29 29 C 1.46821 * 111.16104 * 298.08731 * 21 20 19 30 30 C 1.47040 * 110.99803 * 307.51244 * 13 12 9 31 31 H 1.09000 * 109.56713 * 57.54386 * 30 13 12 32 32 H 0.97000 * 119.99402 * 359.97438 * 1 2 3 33 33 H 0.96701 * 114.00017 * 64.97983 * 11 9 7 34 34 H 1.08999 * 109.47175 * 60.90175 * 12 9 7 35 35 H 1.08996 * 109.47309 * 300.89985 * 12 9 7 36 36 H 1.09000 * 109.51013 * 302.37965 * 14 13 12 37 37 H 1.09006 * 109.50952 * 62.46121 * 14 13 12 38 38 H 1.09003 * 109.50130 * 63.14011 * 15 14 13 39 39 H 1.09000 * 109.50562 * 183.25918 * 15 14 13 40 40 H 1.08993 * 109.49030 * 182.29428 * 19 17 16 41 41 H 1.08998 * 109.49066 * 302.34693 * 19 17 16 42 42 H 1.09003 * 109.46986 * 179.17935 * 20 19 17 43 43 H 1.08996 * 109.47162 * 299.18274 * 20 19 17 44 44 H 1.09007 * 109.47181 * 53.95341 * 22 21 20 45 45 H 1.09001 * 109.47136 * 173.94664 * 22 21 20 46 46 H 1.08000 * 119.99530 * 359.97438 * 24 23 22 47 47 H 1.08007 * 120.00267 * 180.26785 * 25 24 23 48 48 H 1.08003 * 119.99840 * 179.83403 * 26 25 24 49 49 H 1.08004 * 119.99655 * 180.02562 * 27 26 25 50 50 H 1.08001 * 119.99788 * 180.02562 * 28 27 26 51 51 H 1.08999 * 109.45503 * 301.76738 * 29 21 20 52 52 H 1.09001 * 109.44976 * 181.85131 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6240 -2.5574 0.8880 11 8 0.4298 -2.5741 -1.1688 12 6 2.2451 -3.6621 -0.0015 13 7 1.5107 -4.9342 -0.0244 14 6 2.4318 -6.0761 0.0690 15 6 1.6329 -7.3792 -0.0191 16 8 0.6419 -7.3958 1.0120 17 6 -0.2713 -6.2976 0.9518 18 1 -0.8151 -6.3274 0.0076 19 6 -1.2584 -6.3900 2.1177 20 6 -0.4936 -6.2844 3.4391 21 7 0.2281 -5.0062 3.4857 22 6 0.8593 -4.8056 4.7969 23 6 -0.2077 -4.6533 5.8500 24 6 -0.6998 -3.3990 6.1591 25 6 -1.6817 -3.2597 7.1220 26 6 -2.1651 -4.3738 7.7824 27 6 -1.6693 -5.6275 7.4770 28 6 -0.6905 -5.7672 6.5110 29 6 1.2188 -4.9173 2.4057 30 6 0.5095 -4.9841 1.0514 31 1 -0.1765 -4.1430 0.9509 32 1 -0.4849 0.8401 0.0004 33 1 0.9265 -2.6049 -1.9979 34 1 2.8604 -3.6140 0.8970 35 1 2.8830 -3.5950 -0.8827 36 1 3.1492 -6.0330 -0.7505 37 1 2.9631 -6.0385 1.0201 38 1 1.1459 -7.4424 -0.9922 39 1 2.3054 -8.2276 0.1078 40 1 -1.9797 -5.5758 2.0489 41 1 -1.7824 -7.3448 2.0757 42 1 -1.1965 -6.3354 4.2707 43 1 0.2180 -7.1066 3.5138 44 1 1.4844 -5.6663 5.0348 45 1 1.4746 -3.9062 4.7701 46 1 -0.3192 -2.5282 5.6459 47 1 -2.0693 -2.2802 7.3604 48 1 -2.9304 -4.2647 8.5366 49 1 -2.0473 -6.4980 7.9927 50 1 -0.3035 -6.7468 6.2721 51 1 1.9216 -5.7464 2.4885 52 1 1.7596 -3.9744 2.4860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930850071.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:57:47 Heat of formation + Delta-G solvation = -68.765491 kcal Electronic energy + Delta-G solvation = -32447.144151 eV Core-core repulsion = 28410.741387 eV Total energy + Delta-G solvation = -4036.402765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79250 -40.22967 -38.29453 -37.95745 -36.11090 -34.23199 -34.20741 -31.92208 -31.79986 -31.12477 -30.69985 -28.42845 -27.21342 -25.87012 -24.96318 -24.06768 -23.45661 -22.78815 -22.13048 -21.45681 -19.81399 -19.07908 -17.66559 -17.53059 -17.36827 -16.93658 -16.70111 -16.65233 -16.46136 -16.12609 -15.92096 -15.77142 -15.38715 -15.25925 -14.88199 -14.65066 -14.38523 -14.29182 -14.22630 -13.89099 -13.67511 -13.38396 -13.30872 -13.11012 -12.91026 -12.83065 -12.77570 -12.72075 -12.66927 -12.12657 -12.09792 -11.99194 -11.94076 -11.81873 -11.59894 -11.21363 -10.95861 -10.66593 -10.50636 -10.05064 -9.78054 -9.69765 -9.40724 -9.05177 -8.11562 -6.37320 0.43485 0.53047 1.39141 1.40454 1.48500 2.37734 2.62181 2.80063 2.93427 3.14777 3.21816 3.65195 3.78031 3.85453 3.94994 3.97732 4.03019 4.14602 4.17555 4.18183 4.26035 4.30822 4.34055 4.34429 4.37609 4.47827 4.51959 4.55631 4.57563 4.66871 4.69232 4.77694 4.78629 4.81156 4.87716 4.92154 4.98959 5.04176 5.10915 5.12407 5.18386 5.23793 5.57838 5.60395 5.64743 5.73646 5.76198 5.86159 6.03494 6.11313 6.14318 6.16096 6.18000 6.26310 6.74266 7.36195 7.62850 8.92533 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008209 B = 0.004189 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.220184 B = 6682.149119 C = 9304.999304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.031 3.969 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.590 4.590 8 H 0.056 0.944 9 C 0.240 3.760 10 H 0.024 0.976 11 O -0.570 6.570 12 C 0.046 3.954 13 N -0.526 5.526 14 C 0.010 3.990 15 C 0.068 3.932 16 O -0.387 6.387 17 C 0.105 3.895 18 H 0.059 0.941 19 C -0.105 4.105 20 C 0.064 3.936 21 N -0.541 5.541 22 C 0.097 3.903 23 C -0.084 4.084 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.119 4.119 29 C 0.049 3.951 30 C 0.067 3.933 31 H 0.069 0.931 32 H 0.260 0.740 33 H 0.352 0.648 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.132 0.868 48 H 0.145 0.855 49 H 0.147 0.853 50 H 0.132 0.868 51 H 0.040 0.960 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -16.363 11.215 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.172 4.172 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.628 4.628 8 H 0.074 0.926 9 C 0.183 3.817 10 H 0.042 0.958 11 O -0.373 6.373 12 C -0.081 4.081 13 N -0.249 5.249 14 C -0.118 4.118 15 C -0.009 4.009 16 O -0.306 6.306 17 C 0.047 3.953 18 H 0.077 0.923 19 C -0.143 4.143 20 C -0.063 4.063 21 N -0.265 5.265 22 C -0.030 4.030 23 C -0.085 4.085 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.080 4.080 30 C -0.043 4.043 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.196 0.804 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.125 0.875 47 H 0.150 0.850 48 H 0.162 0.838 49 H 0.165 0.835 50 H 0.150 0.850 51 H 0.058 0.942 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.472 -16.061 11.261 19.671 hybrid contribution 2.052 1.274 0.008 2.415 sum 0.580 -14.788 11.269 18.601 Atomic orbital electron populations 1.70218 1.07584 1.27230 1.48222 1.25821 0.95387 1.02622 0.93390 0.85701 0.78463 0.78890 0.79043 1.19127 1.21012 1.19536 1.22000 0.93343 0.92977 1.54464 0.92570 1.19153 0.87646 0.89800 0.85127 0.95814 1.86533 1.38042 1.96854 1.15899 1.22722 0.96340 0.89449 0.99629 1.62504 1.15646 1.02435 1.44340 1.22940 0.95742 0.91736 1.01381 1.22764 0.90216 0.96663 0.91260 1.87877 1.43739 1.46154 1.52832 1.22058 0.89955 0.84262 0.99059 0.92314 1.21602 0.96689 1.03552 0.92434 1.22070 0.97314 0.88748 0.98172 1.61851 1.27839 1.34836 1.02012 1.20976 0.93922 1.01054 0.87013 1.19730 0.98145 0.93908 0.96680 1.21156 0.97748 0.97107 0.97877 1.21383 0.96881 1.00055 0.96456 1.21470 1.00229 0.92432 1.00104 1.21436 0.96682 0.98337 0.97556 1.21226 0.97791 0.98002 0.96703 1.22407 0.93936 0.99555 0.92122 1.22165 0.94935 0.99059 0.88108 0.91238 0.93115 0.80397 0.95739 0.90927 0.88651 0.94645 0.92253 0.85912 0.90630 0.88328 0.89403 0.94120 0.93149 0.91401 0.87515 0.85011 0.83758 0.83484 0.85020 0.94173 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.44 12.84 21.45 0.28 -54.17 16 2 C 0.03 1.73 5.40 84.65 0.46 2.19 16 3 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.59 -32.71 8.79 25.60 0.22 -32.49 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.24 12.38 2.26 29.85 0.07 12.45 16 10 H 0.02 1.41 6.31 -2.39 -0.02 1.40 16 11 O -0.57 -30.29 12.59 -148.98 -1.88 -32.16 16 12 C 0.05 1.91 4.15 86.30 0.36 2.27 16 13 N -0.53 -18.83 4.64 -869.82 -4.03 -22.86 16 14 C 0.01 0.28 5.25 86.31 0.45 0.73 16 15 C 0.07 1.61 7.01 72.01 0.51 2.11 16 16 O -0.39 -10.78 9.35 -148.98 -1.39 -12.17 16 17 C 0.10 3.22 3.02 30.65 0.09 3.32 16 18 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 19 C -0.10 -2.82 5.82 30.62 0.18 -2.64 16 20 C 0.06 1.69 5.03 86.32 0.43 2.12 16 21 N -0.54 -16.95 4.65 -900.99 -4.19 -21.13 16 22 C 0.10 2.71 5.12 85.56 0.44 3.15 16 23 C -0.08 -2.17 4.89 -19.87 -0.10 -2.27 16 24 C -0.12 -3.28 9.70 22.27 0.22 -3.07 16 25 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 26 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 27 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 28 C -0.12 -2.49 7.88 22.27 0.18 -2.31 16 29 C 0.05 1.70 3.89 86.33 0.34 2.04 16 30 C 0.07 2.44 1.94 44.94 0.09 2.53 16 31 H 0.07 3.22 6.08 -2.39 -0.01 3.21 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.35 16.62 9.02 -74.06 -0.67 15.95 16 34 H 0.02 1.01 6.80 -2.39 -0.02 1.00 16 35 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.04 1.01 6.32 -2.38 -0.02 0.99 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.09 2.12 5.74 -2.39 -0.01 2.11 16 43 H 0.04 1.05 7.76 -2.39 -0.02 1.04 16 44 H 0.05 1.26 8.07 -2.38 -0.02 1.24 16 45 H 0.07 2.05 7.92 -2.39 -0.02 2.03 16 46 H 0.11 3.18 8.06 -2.91 -0.02 3.16 16 47 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 48 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 50 H 0.13 2.31 7.94 -2.91 -0.02 2.29 16 51 H 0.04 1.32 5.96 -2.39 -0.01 1.31 16 52 H 0.05 1.99 6.57 -2.39 -0.02 1.98 16 Total: -1.00 -67.55 395.01 -4.34 -71.89 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: 0.25 Total: 41.40 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.60 Total: -16.69 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -7.94 Total: -98.16 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -3.27 Total: -44.33 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.55 -4.34 -71.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930850071.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.121 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds