Wall clock time and date at job start Sat Apr 11 2020 07:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48499 * 109.47181 * 239.99889 * 3 2 1 5 5 H 1.48506 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47262 * 119.99697 * 3 2 1 7 7 C 1.37882 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00280 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.46878 * 299.99976 * 9 7 2 11 11 O 1.42901 * 109.47447 * 59.99852 * 9 7 2 12 12 C 1.53002 * 109.47143 * 180.02562 * 9 7 2 13 13 N 1.46894 * 109.46968 * 180.02562 * 12 9 7 14 14 C 1.47173 * 111.00065 * 313.02454 * 13 12 9 15 15 C 1.53005 * 109.67539 * 178.47486 * 14 13 12 16 16 O 1.43190 * 109.66999 * 55.84767 * 15 14 13 17 17 C 1.42782 * 113.17597 * 301.76409 * 16 15 14 18 18 H 1.09004 * 109.46111 * 300.08470 * 17 16 15 19 19 C 1.52885 * 110.68995 * 179.39562 * 17 16 15 20 20 C 1.53173 * 108.88749 * 181.83394 * 19 17 16 21 21 N 1.46757 * 109.89053 * 58.74226 * 20 19 17 22 22 C 1.46900 * 111.00526 * 174.75413 * 21 20 19 23 23 C 1.50704 * 109.46851 * 294.75250 * 22 21 20 24 24 C 1.38234 * 120.00277 * 90.00010 * 23 22 21 25 25 C 1.38230 * 119.99885 * 180.02562 * 24 23 22 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38235 * 119.99518 * 270.01692 * 23 22 21 29 29 C 1.46988 * 111.61273 * 299.15968 * 21 20 19 30 30 C 1.46799 * 111.00149 * 189.99856 * 13 12 9 31 31 H 1.09005 * 109.44860 * 63.43993 * 30 13 12 32 32 H 0.96996 * 120.00400 * 359.97438 * 1 2 3 33 33 H 0.96698 * 113.99299 * 59.99847 * 11 9 7 34 34 H 1.08998 * 109.47068 * 59.99810 * 12 9 7 35 35 H 1.08996 * 109.46627 * 299.99752 * 12 9 7 36 36 H 1.09002 * 109.43388 * 298.53630 * 14 13 12 37 37 H 1.08991 * 109.43157 * 58.41596 * 14 13 12 38 38 H 1.09006 * 109.43769 * 175.90204 * 15 14 13 39 39 H 1.08992 * 109.44374 * 295.78293 * 15 14 13 40 40 H 1.08998 * 109.57263 * 301.66127 * 19 17 16 41 41 H 1.09001 * 109.56670 * 61.89440 * 19 17 16 42 42 H 1.09007 * 109.40231 * 298.61893 * 20 19 17 43 43 H 1.09000 * 109.40410 * 178.87686 * 20 19 17 44 44 H 1.08990 * 109.47288 * 174.74963 * 22 21 20 45 45 H 1.08997 * 109.46718 * 54.74596 * 22 21 20 46 46 H 1.07992 * 119.99701 * 359.97438 * 24 23 22 47 47 H 1.08000 * 120.00356 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00616 * 179.70664 * 26 25 24 49 49 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.00423 * 359.97438 * 28 23 22 51 51 H 1.09003 * 109.53223 * 181.16662 * 29 21 20 52 52 H 1.09003 * 109.52945 * 301.31183 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4299 -2.5752 -1.1665 12 6 2.2453 -3.6621 0.0018 13 7 1.5108 -4.9342 0.0012 14 6 0.4341 -4.9221 1.0045 15 6 -0.3339 -6.2444 0.9519 16 8 0.5742 -7.3367 1.1322 17 6 1.6156 -7.3687 0.1559 18 1 1.1785 -7.4626 -0.8383 19 6 2.5582 -8.5453 0.4099 20 6 3.6822 -8.5137 -0.6302 21 7 4.4090 -7.2418 -0.5414 22 6 5.5694 -7.2345 -1.4422 23 6 6.5659 -8.2689 -0.9860 24 6 6.4905 -9.5617 -1.4694 25 6 7.4043 -10.5106 -1.0505 26 6 8.3938 -10.1665 -0.1487 27 6 8.4698 -8.8734 0.3339 28 6 7.5552 -7.9248 -0.0839 29 6 3.5284 -6.0953 -0.8074 30 6 2.4163 -6.0647 0.2403 31 1 2.8559 -5.9737 1.2337 32 1 -0.4850 0.8400 0.0004 33 1 0.9224 -2.5300 -1.9974 34 1 2.8713 -3.6039 0.8922 35 1 2.8726 -3.6047 -0.8877 36 1 0.8649 -4.7920 1.9973 37 1 -0.2477 -4.0981 0.7947 38 1 -1.0827 -6.2607 1.7440 39 1 -0.8277 -6.3390 -0.0151 40 1 2.9838 -8.4628 1.4100 41 1 2.0055 -9.4809 0.3245 42 1 3.2554 -8.6179 -1.6278 43 1 4.3707 -9.3380 -0.4444 44 1 6.0353 -6.2493 -1.4265 45 1 5.2436 -7.4662 -2.4562 46 1 5.7172 -9.8306 -2.1736 47 1 7.3452 -11.5208 -1.4278 48 1 9.1048 -10.9090 0.1823 49 1 9.2427 -8.6046 1.0388 50 1 7.6142 -6.9147 0.2937 51 1 4.1056 -5.1722 -0.7532 52 1 3.0916 -6.1942 -1.8011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930850072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:57:51 Heat of formation + Delta-G solvation = -50.939737 kcal Electronic energy + Delta-G solvation = -31543.393592 eV Core-core repulsion = 27507.763811 eV Total energy + Delta-G solvation = -4035.629782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.37475 -39.44067 -37.43171 -36.54496 -34.40818 -33.34779 -32.10855 -31.15340 -30.93264 -30.25847 -29.06571 -26.86642 -26.11463 -24.36108 -23.68689 -22.80078 -22.31270 -21.61240 -20.79273 -19.98918 -19.57412 -17.18159 -16.92990 -16.62159 -15.87568 -15.54526 -15.50958 -15.43091 -15.06290 -14.74104 -14.58455 -14.38150 -14.24703 -14.01165 -13.64043 -13.54481 -13.36414 -13.17669 -13.06905 -12.72890 -12.64787 -12.33178 -12.17162 -11.90670 -11.63084 -11.29509 -11.26350 -11.14669 -11.10195 -10.95353 -10.87583 -10.80217 -10.71436 -10.47282 -10.21156 -10.04504 -9.27529 -9.10063 -8.98921 -8.91949 -8.57927 -8.39449 -8.10047 -7.79558 -6.03658 -4.21789 1.12185 1.21124 3.26883 3.32442 3.33927 3.42974 3.86345 3.88395 4.30274 4.43434 4.54731 4.63964 4.77982 4.82046 4.87908 4.92939 5.05217 5.13191 5.21731 5.24104 5.29433 5.35148 5.39476 5.43966 5.45919 5.50497 5.53771 5.63136 5.66928 5.79747 5.81341 5.84045 5.87941 5.93916 6.02757 6.08221 6.17418 6.21323 6.24790 6.31100 6.32055 6.43510 6.43653 6.48296 6.76858 6.79257 6.93343 6.95853 7.34129 7.46053 7.58926 7.71900 7.81327 8.16310 8.81114 9.40872 9.57216 11.00535 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.002775 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.684090 B =10087.715686 C =11879.908593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.231 3.769 10 H 0.057 0.943 11 O -0.556 6.556 12 C 0.030 3.970 13 N -0.520 5.520 14 C 0.019 3.981 15 C 0.065 3.935 16 O -0.386 6.386 17 C 0.098 3.902 18 H 0.060 0.940 19 C -0.107 4.107 20 C 0.057 3.943 21 N -0.535 5.535 22 C 0.094 3.906 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.097 4.097 29 C 0.068 3.932 30 C 0.057 3.943 31 H 0.051 0.949 32 H 0.261 0.739 33 H 0.345 0.655 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.082 0.918 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.372 -20.572 -1.835 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.173 3.827 10 H 0.075 0.925 11 O -0.358 6.358 12 C -0.098 4.098 13 N -0.245 5.245 14 C -0.109 4.109 15 C -0.011 4.011 16 O -0.305 6.305 17 C 0.040 3.960 18 H 0.078 0.922 19 C -0.145 4.145 20 C -0.071 4.071 21 N -0.260 5.260 22 C -0.033 4.033 23 C -0.074 4.074 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.116 4.116 29 C -0.059 4.059 30 C -0.053 4.053 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.188 0.812 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.101 0.899 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.630 -20.636 -1.219 23.245 hybrid contribution 1.133 1.336 -0.486 1.818 sum 11.763 -19.300 -1.705 22.666 Atomic orbital electron populations 1.70056 1.05900 1.26581 1.46904 1.25012 0.94697 0.99076 0.93802 0.86729 0.79724 0.83181 0.78687 1.20136 1.21184 1.20200 1.21591 0.93111 0.91550 1.55033 0.92779 1.19420 0.87852 0.88851 0.86564 0.92528 1.86534 1.37871 1.96298 1.15104 1.23102 0.97662 0.89365 0.99636 1.62363 1.11305 1.02878 1.47993 1.22835 0.95506 0.99069 0.93531 1.22700 0.91382 0.85263 1.01777 1.87923 1.40326 1.49116 1.53101 1.22080 0.87851 0.94044 0.92052 0.92245 1.21514 0.95005 0.97406 1.00563 1.22119 0.95182 0.92393 0.97367 1.61741 1.08497 1.02722 1.53039 1.21014 0.90185 0.98285 0.93802 1.19766 0.96029 0.94401 0.97225 1.21068 0.99037 0.92928 1.00344 1.21097 0.95507 0.99274 0.98195 1.21139 0.98690 0.96491 0.97831 1.21170 0.99196 0.93514 1.00082 1.21073 0.94333 0.99839 0.96330 1.22012 0.93231 0.93321 0.97353 1.22170 0.92684 0.92383 0.98059 0.93092 0.92907 0.81207 0.95339 0.91559 0.94773 0.87515 0.88805 0.92447 0.90416 0.90644 0.94790 0.89801 0.89603 0.93788 0.86356 0.86253 0.86339 0.86152 0.85863 0.89942 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.99 12.84 55.43 0.71 -24.28 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.57 -15.47 8.76 -34.44 -0.30 -15.77 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.23 5.67 2.14 -27.88 -0.06 5.61 16 10 H 0.06 1.52 6.29 -51.92 -0.33 1.20 16 11 O -0.56 -13.97 12.43 -35.23 -0.44 -14.40 16 12 C 0.03 0.60 4.09 -3.83 -0.02 0.58 16 13 N -0.52 -9.42 4.60 -226.45 -1.04 -10.46 16 14 C 0.02 0.34 4.91 -3.67 -0.02 0.32 16 15 C 0.07 1.01 6.98 37.16 0.26 1.27 16 16 O -0.39 -6.14 10.56 -35.23 -0.37 -6.51 16 17 C 0.10 1.42 2.65 -26.65 -0.07 1.35 16 18 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 19 C -0.11 -1.28 5.82 -26.70 -0.16 -1.44 16 20 C 0.06 0.62 5.13 -3.81 -0.02 0.60 16 21 N -0.54 -6.40 4.63 -236.12 -1.09 -7.49 16 22 C 0.09 0.97 5.13 -4.97 -0.03 0.95 16 23 C -0.07 -0.73 4.87 -104.62 -0.51 -1.24 16 24 C -0.12 -1.03 7.87 -39.59 -0.31 -1.34 16 25 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 27 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 28 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 29 C 0.07 0.95 4.50 -3.87 -0.02 0.93 16 30 C 0.06 0.89 1.86 -67.72 -0.13 0.77 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.34 7.86 9.04 45.56 0.41 8.27 16 34 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.07 1.30 6.96 -51.93 -0.36 0.94 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 2.17 5.96 -51.93 -0.31 1.86 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.85 5.76 -51.93 -0.30 0.55 16 44 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 45 H 0.04 0.43 8.07 -51.93 -0.42 0.01 16 46 H 0.12 0.91 7.97 -52.49 -0.42 0.49 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 51 H 0.08 1.20 6.62 -51.93 -0.34 0.85 16 52 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -30.21 400.12 -12.21 -42.41 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -7.94 Total: 9.68 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.04 Total: -10.91 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -1.42 Total: -42.24 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.81 Total: -20.91 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.21 -12.21 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930850072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.526 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds