Wall clock time and date at job start Sat Apr 11 2020 07:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48499 * 109.47181 * 239.99889 * 3 2 1 5 5 H 1.48506 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47262 * 119.99697 * 3 2 1 7 7 C 1.37882 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00280 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.46878 * 299.99976 * 9 7 2 11 11 O 1.42901 * 109.47447 * 59.99852 * 9 7 2 12 12 C 1.53002 * 109.47143 * 180.02562 * 9 7 2 13 13 N 1.46894 * 109.46968 * 180.02562 * 12 9 7 14 14 C 1.47173 * 111.00065 * 313.02454 * 13 12 9 15 15 C 1.53005 * 109.67539 * 178.47486 * 14 13 12 16 16 O 1.43190 * 109.66999 * 55.84767 * 15 14 13 17 17 C 1.42782 * 113.17597 * 301.76409 * 16 15 14 18 18 H 1.09004 * 109.46111 * 300.08470 * 17 16 15 19 19 C 1.52885 * 110.68995 * 179.39562 * 17 16 15 20 20 C 1.53173 * 108.88749 * 181.83394 * 19 17 16 21 21 N 1.46757 * 109.89053 * 58.74226 * 20 19 17 22 22 C 1.46900 * 111.00526 * 174.75413 * 21 20 19 23 23 C 1.50704 * 109.46851 * 294.75250 * 22 21 20 24 24 C 1.38234 * 120.00277 * 90.00010 * 23 22 21 25 25 C 1.38230 * 119.99885 * 180.02562 * 24 23 22 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38235 * 119.99518 * 270.01692 * 23 22 21 29 29 C 1.46988 * 111.61273 * 299.15968 * 21 20 19 30 30 C 1.46799 * 111.00149 * 189.99856 * 13 12 9 31 31 H 1.09005 * 109.44860 * 63.43993 * 30 13 12 32 32 H 0.96996 * 120.00400 * 359.97438 * 1 2 3 33 33 H 0.96698 * 113.99299 * 59.99847 * 11 9 7 34 34 H 1.08998 * 109.47068 * 59.99810 * 12 9 7 35 35 H 1.08996 * 109.46627 * 299.99752 * 12 9 7 36 36 H 1.09002 * 109.43388 * 298.53630 * 14 13 12 37 37 H 1.08991 * 109.43157 * 58.41596 * 14 13 12 38 38 H 1.09006 * 109.43769 * 175.90204 * 15 14 13 39 39 H 1.08992 * 109.44374 * 295.78293 * 15 14 13 40 40 H 1.08998 * 109.57263 * 301.66127 * 19 17 16 41 41 H 1.09001 * 109.56670 * 61.89440 * 19 17 16 42 42 H 1.09007 * 109.40231 * 298.61893 * 20 19 17 43 43 H 1.09000 * 109.40410 * 178.87686 * 20 19 17 44 44 H 1.08990 * 109.47288 * 174.74963 * 22 21 20 45 45 H 1.08997 * 109.46718 * 54.74596 * 22 21 20 46 46 H 1.07992 * 119.99701 * 359.97438 * 24 23 22 47 47 H 1.08000 * 120.00356 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00616 * 179.70664 * 26 25 24 49 49 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.00423 * 359.97438 * 28 23 22 51 51 H 1.09003 * 109.53223 * 181.16662 * 29 21 20 52 52 H 1.09003 * 109.52945 * 301.31183 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4299 -2.5752 -1.1665 12 6 2.2453 -3.6621 0.0018 13 7 1.5108 -4.9342 0.0012 14 6 0.4341 -4.9221 1.0045 15 6 -0.3339 -6.2444 0.9519 16 8 0.5742 -7.3367 1.1322 17 6 1.6156 -7.3687 0.1559 18 1 1.1785 -7.4626 -0.8383 19 6 2.5582 -8.5453 0.4099 20 6 3.6822 -8.5137 -0.6302 21 7 4.4090 -7.2418 -0.5414 22 6 5.5694 -7.2345 -1.4422 23 6 6.5659 -8.2689 -0.9860 24 6 6.4905 -9.5617 -1.4694 25 6 7.4043 -10.5106 -1.0505 26 6 8.3938 -10.1665 -0.1487 27 6 8.4698 -8.8734 0.3339 28 6 7.5552 -7.9248 -0.0839 29 6 3.5284 -6.0953 -0.8074 30 6 2.4163 -6.0647 0.2403 31 1 2.8559 -5.9737 1.2337 32 1 -0.4850 0.8400 0.0004 33 1 0.9224 -2.5300 -1.9974 34 1 2.8713 -3.6039 0.8922 35 1 2.8726 -3.6047 -0.8877 36 1 0.8649 -4.7920 1.9973 37 1 -0.2477 -4.0981 0.7947 38 1 -1.0827 -6.2607 1.7440 39 1 -0.8277 -6.3390 -0.0151 40 1 2.9838 -8.4628 1.4100 41 1 2.0055 -9.4809 0.3245 42 1 3.2554 -8.6179 -1.6278 43 1 4.3707 -9.3380 -0.4444 44 1 6.0353 -6.2493 -1.4265 45 1 5.2436 -7.4662 -2.4562 46 1 5.7172 -9.8306 -2.1736 47 1 7.3452 -11.5208 -1.4278 48 1 9.1048 -10.9090 0.1823 49 1 9.2427 -8.6046 1.0388 50 1 7.6142 -6.9147 0.2937 51 1 4.1056 -5.1722 -0.7532 52 1 3.0916 -6.1942 -1.8011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930850072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:57:50 Heat of formation + Delta-G solvation = -72.475980 kcal Electronic energy + Delta-G solvation = -31544.327474 eV Core-core repulsion = 27507.763811 eV Total energy + Delta-G solvation = -4036.563663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54497 -40.24843 -38.53454 -38.14299 -36.07381 -34.31216 -34.21366 -31.90226 -31.74491 -31.37797 -30.78299 -28.38598 -27.19417 -25.95189 -24.82402 -23.80462 -23.31583 -22.75669 -21.87331 -21.15639 -21.02936 -19.11723 -17.83287 -17.64602 -17.07920 -16.79782 -16.64791 -16.62872 -16.33787 -16.16921 -16.00965 -15.64960 -15.48590 -15.37639 -14.86975 -14.75637 -14.59407 -14.27236 -14.20745 -14.01916 -13.67509 -13.38866 -13.27542 -13.10018 -12.97689 -12.85651 -12.78860 -12.58796 -12.41125 -12.31543 -12.16390 -12.05944 -11.89444 -11.79831 -11.62912 -11.35134 -10.94814 -10.68236 -10.54428 -10.07055 -9.75555 -9.68506 -9.33298 -9.28976 -8.14803 -6.40269 0.45490 0.55981 1.39913 1.41019 1.49187 2.36228 2.54213 2.67307 2.94198 3.11546 3.23903 3.57856 3.78589 3.80686 3.97387 3.99993 4.05133 4.13068 4.15222 4.21037 4.22771 4.27094 4.31055 4.34914 4.37967 4.45354 4.49934 4.58469 4.61416 4.65529 4.69516 4.70644 4.81323 4.81964 4.83730 4.89131 4.93214 5.00765 5.04955 5.15508 5.20386 5.22834 5.58118 5.60593 5.67829 5.71964 5.74565 5.83598 5.96098 6.02800 6.09026 6.14210 6.17636 6.22647 6.71352 7.33287 7.57772 8.89303 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.002775 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.684090 B =10087.715686 C =11879.908593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.235 3.765 10 H 0.026 0.974 11 O -0.568 6.568 12 C 0.050 3.950 13 N -0.522 5.522 14 C 0.021 3.979 15 C 0.073 3.927 16 O -0.392 6.392 17 C 0.098 3.902 18 H 0.061 0.939 19 C -0.100 4.100 20 C 0.061 3.939 21 N -0.542 5.542 22 C 0.097 3.903 23 C -0.086 4.086 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.115 4.115 29 C 0.078 3.922 30 C 0.060 3.940 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.354 0.646 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.023 0.977 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.044 0.956 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.131 0.869 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.134 0.866 50 H 0.119 0.881 51 H 0.072 0.928 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.838 -22.442 -2.562 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.628 4.628 8 H 0.075 0.925 9 C 0.177 3.823 10 H 0.044 0.956 11 O -0.371 6.371 12 C -0.078 4.078 13 N -0.247 5.247 14 C -0.107 4.107 15 C -0.004 4.004 16 O -0.311 6.311 17 C 0.040 3.960 18 H 0.079 0.921 19 C -0.138 4.138 20 C -0.066 4.066 21 N -0.268 5.268 22 C -0.030 4.030 23 C -0.087 4.087 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.134 4.134 29 C -0.050 4.050 30 C -0.050 4.050 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.198 0.802 34 H 0.037 0.963 35 H 0.093 0.907 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.149 0.851 47 H 0.159 0.841 48 H 0.158 0.842 49 H 0.152 0.848 50 H 0.137 0.863 51 H 0.090 0.910 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.119 -22.526 -1.952 25.653 hybrid contribution 0.700 1.856 -0.241 1.998 sum 12.819 -20.670 -2.193 24.421 Atomic orbital electron populations 1.70193 1.07537 1.27433 1.48195 1.25850 0.95483 1.02741 0.93354 0.85642 0.78405 0.78644 0.79061 1.19114 1.20978 1.19578 1.21987 0.93460 0.92796 1.54536 0.92484 1.19228 0.87749 0.89965 0.85374 0.95633 1.86485 1.38545 1.96405 1.15687 1.22719 0.96382 0.89203 0.99523 1.62364 1.11626 1.02636 1.48038 1.22760 0.95219 0.99912 0.92812 1.22688 0.91221 0.83573 1.02912 1.87927 1.40654 1.48824 1.53682 1.22221 0.87760 0.94142 0.91903 0.92095 1.21519 0.94878 0.97036 1.00368 1.22138 0.94952 0.92070 0.97457 1.61718 1.08604 1.02554 1.53879 1.21002 0.89589 0.98494 0.93865 1.19772 0.96156 0.94844 0.97912 1.21254 0.99622 0.92552 1.00476 1.21417 0.94992 1.00191 0.97793 1.21465 0.99007 0.96627 0.97442 1.21406 0.99318 0.93773 1.00378 1.21192 0.95118 1.00111 0.96982 1.21822 0.92687 0.93986 0.96470 1.22218 0.93041 0.92041 0.97662 0.95137 0.92958 0.80172 0.96323 0.90683 0.95912 0.90318 0.86618 0.92073 0.91493 0.88637 0.93739 0.88490 0.90069 0.92905 0.85085 0.84064 0.84244 0.84838 0.86340 0.91004 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.25 12.84 21.45 0.28 -52.97 16 2 C 0.03 1.59 5.40 84.66 0.46 2.04 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.59 -32.24 8.76 25.60 0.22 -32.02 16 8 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.23 11.90 2.14 29.85 0.06 11.96 16 10 H 0.03 1.46 6.29 -2.38 -0.01 1.45 16 11 O -0.57 -29.26 12.43 -148.98 -1.85 -31.11 16 12 C 0.05 2.06 4.09 86.30 0.35 2.41 16 13 N -0.52 -19.24 4.60 -870.35 -4.01 -23.25 16 14 C 0.02 0.79 4.91 86.25 0.42 1.22 16 15 C 0.07 2.21 6.98 71.98 0.50 2.71 16 16 O -0.39 -12.06 10.56 -148.98 -1.57 -13.63 16 17 C 0.10 2.73 2.65 30.64 0.08 2.81 16 18 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 19 C -0.10 -2.21 5.82 30.61 0.18 -2.03 16 20 C 0.06 1.19 5.13 86.39 0.44 1.64 16 21 N -0.54 -12.38 4.63 -900.95 -4.17 -16.55 16 22 C 0.10 1.90 5.13 85.56 0.44 2.34 16 23 C -0.09 -1.60 4.87 -19.86 -0.10 -1.70 16 24 C -0.12 -1.88 7.87 22.27 0.18 -1.70 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 26 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 27 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 28 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 29 C 0.08 2.13 4.50 86.23 0.39 2.52 16 30 C 0.06 1.88 1.86 44.96 0.08 1.96 16 31 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.35 16.39 9.04 -74.06 -0.67 15.72 16 34 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.07 2.97 6.96 -2.39 -0.02 2.96 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 3.38 5.96 -2.39 -0.01 3.37 16 38 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.10 1.69 5.76 -2.39 -0.01 1.68 16 44 H 0.08 1.63 7.94 -2.39 -0.02 1.61 16 45 H 0.05 0.93 8.07 -2.39 -0.02 0.91 16 46 H 0.13 1.64 7.97 -2.91 -0.02 1.62 16 47 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 48 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 49 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 50 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 51 H 0.07 2.09 6.62 -2.39 -0.02 2.07 16 52 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -65.21 400.12 -4.47 -69.68 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.23 Total: 35.37 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.60 Total: -12.75 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -7.91 Total: -92.78 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -3.42 Total: -44.74 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.21 -4.47 -69.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930850072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.797 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds