Wall clock time and date at job start Sat Apr 11 2020 07:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48494 * 109.47248 * 89.99918 * 3 2 1 5 5 H 1.48507 * 109.47013 * 329.99852 * 3 2 1 6 6 H 1.48499 * 109.47263 * 210.00013 * 3 2 1 7 7 C 1.38656 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00016 * 359.97438 * 7 2 1 9 9 O 1.34830 * 119.99475 * 180.02562 * 7 2 1 10 10 C 1.35758 * 116.99451 * 174.94221 * 9 7 2 11 11 C 1.38879 * 120.06488 * 185.25543 * 10 9 7 12 12 C 1.38103 * 119.92727 * 179.73572 * 11 10 9 13 13 C 1.38300 * 120.06959 * 0.51288 * 12 11 10 14 14 C 1.50698 * 119.93314 * 179.73789 * 13 12 11 15 15 N 1.46898 * 109.47241 * 270.02590 * 14 13 12 16 16 C 1.49217 * 111.00194 * 69.87382 * 15 14 13 17 17 C 1.55057 * 102.70926 * 198.46521 * 16 15 14 18 18 C 1.55720 * 103.11505 * 36.57906 * 17 16 15 19 19 H 1.08992 * 109.61402 * 100.06256 * 18 17 16 20 20 C 1.47438 * 111.00015 * 314.96281 * 15 14 13 21 21 H 1.09000 * 105.03842 * 38.98638 * 20 15 14 22 22 C 1.49110 * 113.51409 * 285.67734 * 20 15 14 23 23 C 1.52678 * 112.39049 * 262.30738 * 22 20 15 24 24 C 1.53475 * 107.48993 * 306.97745 * 23 22 20 25 25 N 1.45353 * 107.40630 * 219.11362 * 18 17 16 26 26 C 1.46892 * 111.00173 * 279.86544 * 25 18 17 27 27 C 1.52998 * 109.47367 * 282.36243 * 26 25 18 28 28 O 1.42894 * 109.47330 * 67.03967 * 27 26 25 29 29 C 1.38303 * 120.13882 * 359.76517 * 13 12 11 30 30 C 1.38100 * 120.06794 * 359.97430 * 29 13 12 31 31 H 0.96998 * 120.00118 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.03438 * 359.97379 * 11 10 9 33 33 H 1.08004 * 119.96294 * 180.22906 * 12 11 10 34 34 H 1.09004 * 109.46774 * 30.02247 * 14 13 12 35 35 H 1.08994 * 109.47248 * 150.01988 * 14 13 12 36 36 H 1.09003 * 110.76503 * 316.76542 * 16 15 14 37 37 H 1.09001 * 110.76671 * 79.97227 * 16 15 14 38 38 H 1.08994 * 110.68987 * 154.99026 * 17 16 15 39 39 H 1.09004 * 110.68498 * 278.00594 * 17 16 15 40 40 H 1.08998 * 109.17820 * 141.44017 * 22 20 15 41 41 H 1.08998 * 108.72177 * 22.86019 * 22 20 15 42 42 H 1.09000 * 109.85565 * 187.48402 * 23 22 20 43 43 H 1.09001 * 109.85758 * 66.47607 * 23 22 20 44 44 H 1.08997 * 109.73739 * 307.89374 * 24 23 22 45 45 H 1.08991 * 109.74485 * 187.18111 * 24 23 22 46 46 H 1.09006 * 109.46856 * 42.36080 * 26 25 18 47 47 H 1.09000 * 109.47239 * 162.36067 * 26 25 18 48 48 H 1.09006 * 109.47088 * 187.03647 * 27 26 25 49 49 H 1.08998 * 109.46966 * 307.03450 * 27 26 25 50 50 H 0.96703 * 114.00366 * 180.02562 * 28 27 26 51 51 H 1.07994 * 119.96739 * 179.97438 * 29 13 12 52 52 H 1.08001 * 120.03622 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4000 5 1 1.4470 2.6527 -0.7001 6 1 3.5471 1.4402 -0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4057 0.1061 11 6 5.3556 -2.4724 0.2230 12 6 5.9791 -3.6995 0.3362 13 6 5.2294 -4.8616 0.3226 14 6 5.9135 -6.1992 0.4404 15 7 6.2553 -6.6941 -0.8998 16 6 7.3484 -5.8804 -1.5077 17 6 7.2266 -6.2182 -3.0161 18 6 5.6890 -6.3460 -3.2266 19 1 5.3022 -5.4267 -3.6662 20 6 5.1262 -6.5189 -1.8316 21 1 4.6932 -5.5527 -1.5727 22 6 4.0168 -7.4905 -1.6113 23 6 4.0890 -8.6814 -2.5640 24 6 4.1765 -8.1253 -3.9918 25 7 5.4657 -7.4553 -4.1389 26 6 5.6898 -7.0450 -5.5315 27 6 4.4799 -6.2526 -6.0307 28 8 4.3973 -5.0136 -5.3238 29 6 3.8532 -4.7987 0.2005 30 6 3.2234 -3.5745 0.0923 31 1 -0.4850 0.8400 0.0004 32 1 5.9420 -1.5655 0.2292 33 1 7.0537 -3.7518 0.4309 34 1 6.8234 -6.0911 1.0308 35 1 5.2449 -6.9073 0.9297 36 1 7.1805 -4.8173 -1.3351 37 1 8.3196 -6.1849 -1.1178 38 1 7.6330 -5.4111 -3.6255 39 1 7.7283 -7.1593 -3.2417 40 1 3.0628 -6.9830 -1.7539 41 1 4.0705 -7.8563 -0.5860 42 1 3.1934 -9.2939 -2.4596 43 1 4.9742 -9.2782 -2.3443 44 1 3.3696 -7.4118 -4.1590 45 1 4.1017 -8.9416 -4.7101 46 1 6.5813 -6.4203 -5.5872 47 1 5.8265 -7.9296 -6.1534 48 1 4.5894 -6.0558 -7.0972 49 1 3.5715 -6.8301 -5.8592 50 1 3.6514 -4.4582 -5.5891 51 1 3.2706 -5.7079 0.1898 52 1 2.1487 -3.5261 -0.0034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934259590.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:00 Heat of formation + Delta-G solvation = -19.841873 kcal Electronic energy + Delta-G solvation = -32467.416586 eV Core-core repulsion = 28433.135309 eV Total energy + Delta-G solvation = -4034.281277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.74283 -39.20227 -37.97845 -36.59088 -35.58113 -33.76048 -32.51125 -31.81433 -30.46667 -29.03364 -28.92811 -27.92706 -25.67595 -24.67895 -24.05091 -22.34734 -22.32554 -21.57026 -20.90401 -20.14272 -18.31755 -17.90421 -17.63699 -17.27578 -16.53707 -15.81301 -15.30857 -15.12103 -15.02933 -14.83767 -14.64056 -14.16422 -14.02316 -13.82866 -13.80249 -13.64041 -13.18325 -12.86429 -12.84656 -12.57648 -12.51163 -12.33374 -12.22939 -12.01658 -11.79187 -11.43695 -11.25978 -11.23072 -11.11798 -11.04089 -10.79337 -10.73204 -10.67064 -10.53115 -10.38694 -10.23432 -10.13796 -9.96080 -9.43029 -8.89871 -8.30208 -8.22389 -7.91076 -7.34710 -6.46116 -4.12749 2.06527 2.13496 3.18381 3.22370 3.36792 3.81726 4.09065 4.19704 4.21665 4.45858 4.64891 4.80553 4.81509 4.90052 4.97805 5.05203 5.08255 5.11320 5.15908 5.28853 5.32724 5.35803 5.45383 5.51549 5.59016 5.61263 5.65568 5.72409 5.74481 5.82286 5.84053 5.91302 5.99676 6.04923 6.06561 6.08480 6.15752 6.22664 6.25807 6.37154 6.38028 6.44945 6.51582 6.73288 6.96576 7.02977 7.14098 7.21710 7.26662 7.31016 7.38301 7.48163 7.55858 7.75133 7.99115 8.89141 9.51364 10.61461 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.003377 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.295466 B = 8288.479637 C = 9154.245616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.163 3.837 11 C -0.193 4.193 12 C -0.067 4.067 13 C -0.209 4.209 14 C 0.094 3.906 15 N -0.495 5.495 16 C 0.024 3.976 17 C -0.113 4.113 18 C 0.093 3.907 19 H 0.085 0.915 20 C 0.056 3.944 21 H 0.062 0.938 22 C -0.100 4.100 23 C -0.111 4.111 24 C 0.061 3.939 25 N -0.537 5.537 26 C 0.060 3.940 27 C 0.034 3.966 28 O -0.563 6.563 29 C -0.060 4.060 30 C -0.221 4.221 31 H 0.280 0.720 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.049 0.951 50 H 0.376 0.624 51 H 0.108 0.892 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 -15.479 -8.897 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.122 6.122 10 C 0.110 3.890 11 C -0.213 4.213 12 C -0.086 4.086 13 C -0.211 4.211 14 C -0.033 4.033 15 N -0.218 5.218 16 C -0.104 4.104 17 C -0.152 4.152 18 C -0.015 4.015 19 H 0.102 0.898 20 C -0.053 4.053 21 H 0.080 0.920 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.067 4.067 25 N -0.261 5.261 26 C -0.069 4.069 27 C -0.045 4.045 28 O -0.370 6.370 29 C -0.078 4.078 30 C -0.241 4.241 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.224 0.776 51 H 0.126 0.874 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.708 -16.236 -8.416 21.714 hybrid contribution -1.375 2.425 -0.550 2.841 sum 10.333 -13.811 -8.966 19.440 Atomic orbital electron populations 1.69645 1.05564 1.28521 1.47934 1.24463 0.95018 0.98813 0.95626 0.86191 0.80334 0.81438 0.79011 1.19842 1.20739 1.18382 1.20759 0.76873 0.96610 1.52284 0.87677 1.83577 1.22636 1.25775 1.80181 1.19123 0.91675 0.85472 0.92690 1.20201 0.91985 0.97856 1.11217 1.20521 0.98154 0.91378 0.98500 1.19909 0.94141 0.95490 1.11552 1.21139 0.99265 0.91611 0.91331 1.65427 1.05965 1.48979 1.01430 1.23398 0.95524 0.97048 0.94437 1.22839 0.95831 1.01435 0.95098 1.21879 0.95554 0.93075 0.91037 0.89769 1.21015 0.92088 1.00627 0.91559 0.92039 1.20601 0.96906 0.96022 1.00283 1.21567 1.01843 0.97552 0.93938 1.21960 0.89760 0.97167 0.97763 1.60337 1.31789 1.30364 1.03568 1.22276 0.97001 0.97994 0.89605 1.23053 0.99996 0.86122 0.95360 1.86542 1.53941 1.31415 1.65065 1.20688 0.93536 0.96638 0.96981 1.21259 1.01049 0.91870 1.09884 0.91024 0.86633 0.87052 0.90773 0.90723 0.92586 0.90579 0.92209 0.90242 0.92377 0.91382 0.91975 0.90631 0.94776 0.91298 0.90175 0.89585 0.93778 0.93292 0.77607 0.87379 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.96 55.48 0.77 -24.43 16 2 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 3 Si 0.90 21.59 28.62 -169.99 -4.86 16.72 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 8 H 0.11 3.01 5.44 -52.49 -0.29 2.73 16 9 O -0.22 -5.71 8.59 0.02 0.00 -5.71 16 10 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 11 C -0.19 -3.81 9.99 -39.39 -0.39 -4.21 16 12 C -0.07 -1.12 8.02 -39.61 -0.32 -1.44 16 13 C -0.21 -3.38 3.75 -104.58 -0.39 -3.77 16 14 C 0.09 1.28 5.43 -4.98 -0.03 1.26 16 15 N -0.50 -6.69 5.43 -227.58 -1.23 -7.93 16 16 C 0.02 0.31 6.37 -1.45 -0.01 0.30 16 17 C -0.11 -1.41 6.01 -24.19 -0.15 -1.56 16 18 C 0.09 1.24 2.71 -67.90 -0.18 1.06 16 19 H 0.08 1.32 5.00 -51.93 -0.26 1.06 16 20 C 0.06 0.78 1.84 -70.13 -0.13 0.65 16 21 H 0.06 1.03 4.09 -51.93 -0.21 0.82 16 22 C -0.10 -1.28 4.39 -28.81 -0.13 -1.40 16 23 C -0.11 -1.22 6.23 -26.65 -0.17 -1.39 16 24 C 0.06 0.65 4.63 -4.05 -0.02 0.64 16 25 N -0.54 -6.18 4.10 -227.50 -0.93 -7.11 16 26 C 0.06 0.58 5.82 -3.83 -0.02 0.56 16 27 C 0.03 0.32 6.76 37.16 0.25 0.57 16 28 O -0.56 -6.60 10.81 -35.23 -0.38 -6.98 16 29 C -0.06 -1.06 7.46 -39.61 -0.30 -1.36 16 30 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 31 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 33 H 0.11 1.58 7.58 -52.48 -0.40 1.18 16 34 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 35 H 0.07 0.98 7.33 -51.93 -0.38 0.60 16 36 H 0.06 0.79 5.39 -51.93 -0.28 0.51 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.98 7.99 -51.93 -0.41 0.57 16 40 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 41 H 0.07 0.87 7.00 -51.93 -0.36 0.50 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.40 6.50 -51.93 -0.34 0.06 16 45 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 46 H 0.08 0.82 7.44 -51.93 -0.39 0.44 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.05 0.45 6.07 -51.93 -0.32 0.13 16 50 H 0.38 3.27 9.12 45.56 0.42 3.68 16 51 H 0.11 1.73 6.97 -52.49 -0.37 1.36 16 52 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -29.97 384.43 -10.46 -40.43 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.23 Total: 9.84 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -2.39 Total: -20.63 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -1.39 Total: -39.47 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.38 Total: -12.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.72 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.97 -10.46 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934259590.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.593 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds