Wall clock time and date at job start Sat Apr 11 2020 07:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99601 * 2 1 4 4 H 1.48503 * 109.46966 * 239.99688 * 3 2 1 5 5 H 1.48500 * 109.47535 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46806 * 120.00155 * 3 2 1 7 7 C 1.38808 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65126 * 12.86348 * 9 7 2 11 11 C 1.54902 * 104.83236 * 155.83802 * 10 9 7 12 12 C 1.55395 * 101.67221 * 36.92311 * 11 10 9 13 13 C 1.47027 * 125.64755 * 192.82238 * 9 7 2 14 14 H 1.08996 * 109.87923 * 300.66549 * 13 9 7 15 15 C 1.52998 * 109.88081 * 61.67410 * 13 9 7 16 16 H 1.08996 * 109.50424 * 297.48403 * 15 13 9 17 17 C 1.53038 * 109.49438 * 177.41877 * 15 13 9 18 18 C 1.53047 * 109.53827 * 178.65248 * 17 15 13 19 19 C 1.53189 * 109.30975 * 61.36667 * 18 17 15 20 20 N 1.46923 * 108.77637 * 305.36538 * 19 18 17 21 21 C 1.34778 * 120.62722 * 233.58731 * 20 19 18 22 22 O 1.21282 * 119.99435 * 180.02562 * 21 20 19 23 23 C 1.50701 * 120.00494 * 359.97438 * 21 20 19 24 24 C 1.52997 * 109.46984 * 179.97438 * 23 21 20 25 25 C 1.50699 * 109.46625 * 180.02562 * 24 23 21 26 26 C 1.34515 * 125.79095 * 89.71980 * 25 24 23 27 27 C 1.41386 * 106.84106 * 179.88803 * 26 25 24 28 28 C 1.34514 * 106.84247 * 0.37042 * 27 26 25 29 29 O 1.34306 * 125.79005 * 270.02420 * 25 24 23 30 30 C 1.46921 * 118.73850 * 53.86183 * 20 19 18 31 31 H 0.97002 * 119.99668 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.36382 * 274.67874 * 10 9 7 33 33 H 1.08996 * 110.36220 * 36.99303 * 10 9 7 34 34 H 1.09004 * 111.00346 * 155.08807 * 11 10 9 35 35 H 1.09003 * 111.00222 * 278.89399 * 11 10 9 36 36 H 1.09001 * 110.85935 * 206.30129 * 12 11 10 37 37 H 1.08999 * 110.69559 * 82.94975 * 12 11 10 38 38 H 1.09000 * 109.46540 * 58.63399 * 17 15 13 39 39 H 1.09000 * 109.45544 * 298.66756 * 17 15 13 40 40 H 1.08998 * 109.49431 * 301.41462 * 18 17 15 41 41 H 1.09001 * 109.52310 * 181.33404 * 18 17 15 42 42 H 1.08998 * 109.58172 * 185.57649 * 19 18 17 43 43 H 1.09004 * 109.70521 * 65.22609 * 19 18 17 44 44 H 1.08998 * 109.46329 * 60.00240 * 23 21 20 45 45 H 1.08997 * 109.47133 * 300.00301 * 23 21 20 46 46 H 1.08998 * 109.47336 * 60.00925 * 24 23 21 47 47 H 1.08997 * 109.47488 * 300.00152 * 24 23 21 48 48 H 1.07991 * 126.58041 * 0.02562 * 26 25 24 49 49 H 1.07996 * 126.58162 * 180.12255 * 27 26 25 50 50 H 1.08005 * 125.79579 * 179.79328 * 28 27 26 51 51 H 1.08999 * 109.58689 * 65.93063 * 30 20 19 52 52 H 1.09005 * 109.58886 * 186.35054 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1153 -2.5481 -0.2690 11 6 -0.2672 -4.0086 -0.7620 12 6 0.7714 -4.7496 0.1252 13 6 1.9061 -3.7127 0.2629 14 1 2.6918 -3.9246 -0.4622 15 6 2.4809 -3.7554 1.6801 16 1 3.2871 -3.0271 1.7680 17 6 3.0246 -5.1565 1.9688 18 6 3.6301 -5.1911 3.3740 19 6 2.5405 -4.8738 4.4030 20 7 1.9128 -3.5938 4.0477 21 6 1.8286 -2.5965 4.9504 22 8 1.3077 -1.5447 4.6450 23 6 2.3806 -2.7886 6.3394 24 6 2.1587 -1.5146 7.1571 25 6 2.7113 -1.7066 8.5459 26 6 3.9682 -1.4303 8.9376 27 6 4.0503 -1.7566 10.3108 28 6 2.8411 -2.2205 10.6742 29 8 2.0341 -2.1879 9.6011 30 6 1.3733 -3.4239 2.6918 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6899 -2.3942 0.6444 33 1 -0.4372 -1.8510 -1.0426 34 1 -1.2753 -4.3803 -0.5778 35 1 -0.0087 -4.0936 -1.8175 36 1 1.1312 -5.6516 -0.3697 37 1 0.3456 -4.9870 1.1001 38 1 3.7923 -5.4062 1.2364 39 1 2.2129 -5.8811 1.9052 40 1 4.4254 -4.4493 3.4457 41 1 4.0384 -6.1825 3.5703 42 1 2.9856 -4.7997 5.3952 43 1 1.7890 -5.6633 4.3978 44 1 3.4482 -3.0004 6.2799 45 1 1.8708 -3.6232 6.8208 46 1 1.0913 -1.3024 7.2166 47 1 2.6688 -0.6804 6.6756 48 1 4.7616 -1.0332 8.3219 49 1 4.9185 -1.6568 10.9453 50 1 2.5657 -2.5611 11.6614 51 1 0.5290 -4.0979 2.5474 52 1 1.0479 -2.3926 2.5546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963265374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:36 Heat of formation + Delta-G solvation = -22.286384 kcal Electronic energy + Delta-G solvation = -31686.560971 eV Core-core repulsion = 27652.173692 eV Total energy + Delta-G solvation = -4034.387279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.48545 -41.37361 -39.78948 -37.80148 -35.19193 -34.70083 -33.85051 -33.62094 -32.25135 -31.15070 -30.01363 -28.22536 -26.67993 -26.47804 -24.91196 -23.91351 -22.65315 -22.37958 -21.80089 -21.29044 -20.33899 -19.58879 -18.71867 -18.50741 -17.68513 -17.26965 -16.93795 -16.80281 -16.58952 -15.99732 -15.75317 -15.56561 -15.40056 -15.04639 -14.79614 -14.29429 -14.20364 -13.98569 -13.85691 -13.72627 -13.68712 -13.54204 -13.34528 -13.08936 -13.05217 -12.93047 -12.86232 -12.70636 -12.66234 -12.14296 -12.11407 -11.96161 -11.80011 -11.72135 -11.51151 -11.33717 -11.13757 -11.09797 -10.86261 -10.77651 -10.62944 -9.52625 -9.38132 -8.74829 -7.84077 -5.17476 0.78464 1.37170 1.42544 1.46519 1.64348 1.70236 1.97448 2.22424 2.48324 3.35003 3.46823 3.66143 3.81400 3.90434 3.93941 3.99142 4.04098 4.14094 4.16073 4.17409 4.23927 4.31394 4.32369 4.35871 4.42550 4.46654 4.65274 4.69939 4.69959 4.81112 4.87711 4.91507 4.95492 4.97070 5.01530 5.06489 5.06904 5.08737 5.21392 5.23422 5.24335 5.34143 5.39814 5.49110 5.58949 5.62699 5.62994 5.67451 5.70709 5.82559 6.22725 6.28353 6.50871 7.14227 7.24088 7.84720 8.50130 9.26317 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.003179 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.707646 B = 8807.043751 C =10413.896024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.112 4.112 13 C 0.156 3.844 14 H 0.034 0.966 15 C -0.093 4.093 16 H 0.030 0.970 17 C -0.108 4.108 18 C -0.129 4.129 19 C 0.099 3.901 20 N -0.611 5.611 21 C 0.497 3.503 22 O -0.594 6.594 23 C -0.116 4.116 24 C -0.023 4.023 25 C -0.024 4.024 26 C -0.216 4.216 27 C -0.225 4.225 28 C -0.042 4.042 29 O -0.193 6.193 30 C 0.138 3.862 31 H 0.242 0.758 32 H -0.014 1.014 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.154 0.846 49 H 0.170 0.830 50 H 0.238 0.762 51 H 0.066 0.934 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.410 -16.980 17.654 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.150 4.150 13 C 0.049 3.951 14 H 0.052 0.948 15 C -0.115 4.115 16 H 0.049 0.951 17 C -0.146 4.146 18 C -0.166 4.166 19 C -0.022 4.022 20 N -0.343 5.343 21 C 0.286 3.714 22 O -0.475 6.475 23 C -0.155 4.155 24 C -0.061 4.061 25 C -0.073 4.073 26 C -0.235 4.235 27 C -0.244 4.244 28 C -0.109 4.109 29 O -0.090 6.090 30 C 0.015 3.985 31 H 0.052 0.948 32 H 0.004 0.996 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.172 0.828 49 H 0.187 0.813 50 H 0.254 0.746 51 H 0.084 0.916 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.799 -16.313 17.457 25.133 hybrid contribution 0.286 2.089 -0.263 2.125 sum 8.086 -14.224 17.193 23.734 Atomic orbital electron populations 1.70125 1.06085 1.24799 1.58315 1.25522 0.96394 1.00567 1.02938 0.85400 0.77455 0.80191 0.77842 1.19704 1.22110 1.21647 1.19083 0.90263 0.83876 1.42138 0.91331 1.44703 1.05407 1.01834 1.81504 1.21193 0.84501 0.93240 0.95903 1.22927 0.99549 0.95695 0.99389 1.22684 0.94943 0.97223 1.00112 1.21219 0.95132 0.85561 0.93184 0.94790 1.21822 0.96357 0.97728 0.95580 0.95096 1.21580 1.01043 0.94501 0.97473 1.21917 0.97270 1.03392 0.94071 1.22136 0.96168 0.83770 1.00148 1.48370 1.58436 1.15504 1.12027 1.21415 0.78827 0.82847 0.88287 1.90775 1.46906 1.28863 1.80968 1.21624 1.04378 0.99842 0.89663 1.19702 1.02086 0.98241 0.86039 1.22302 0.92050 1.03731 0.89237 1.21902 0.97101 1.07436 0.97080 1.22172 1.00099 1.06359 0.95780 1.24829 0.89608 1.04510 0.91908 1.84023 1.41307 1.65575 1.18100 1.21376 0.95680 1.00937 0.80513 0.94822 0.99635 0.95016 0.90183 0.91747 0.88411 0.90650 0.90967 0.89933 0.92901 0.87121 0.87301 0.89339 0.86146 0.86191 0.91038 0.89450 0.82785 0.81293 0.74553 0.91594 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.59 10.51 21.65 0.23 -60.37 16 2 C -0.06 -3.70 5.47 84.86 0.46 -3.24 16 3 Si 0.96 49.89 29.55 68.60 2.03 51.92 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 7 C -0.22 -13.12 9.86 84.03 0.83 -12.29 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.61 -31.61 2.41 -668.27 -1.61 -33.23 16 10 C 0.18 9.01 5.45 86.85 0.47 9.48 16 11 C -0.14 -4.99 7.09 32.07 0.23 -4.77 16 12 C -0.11 -3.46 5.22 31.87 0.17 -3.30 16 13 C 0.16 6.10 2.95 45.34 0.13 6.23 16 14 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.09 -3.30 2.11 -10.57 -0.02 -3.32 16 16 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 17 C -0.11 -2.44 4.89 30.62 0.15 -2.29 16 18 C -0.13 -2.24 6.08 30.67 0.19 -2.06 16 19 C 0.10 1.80 6.34 86.36 0.55 2.34 16 20 N -0.61 -18.90 2.97 -818.08 -2.43 -21.32 16 21 C 0.50 17.12 7.70 87.66 0.67 17.79 16 22 O -0.59 -28.43 15.39 -3.04 -0.05 -28.48 16 23 C -0.12 -2.61 4.03 29.85 0.12 -2.49 16 24 C -0.02 -0.59 5.04 29.85 0.15 -0.44 16 25 C -0.02 -0.54 6.57 24.83 0.16 -0.37 16 26 C -0.22 -4.37 10.81 22.19 0.24 -4.13 16 27 C -0.23 -3.66 10.91 22.19 0.24 -3.42 16 28 C -0.04 -0.64 12.09 66.97 0.81 0.17 16 29 O -0.19 -4.23 10.65 -2.56 -0.03 -4.26 16 30 C 0.14 5.36 5.29 86.51 0.46 5.81 16 31 H 0.24 15.36 8.31 -92.71 -0.77 14.58 16 32 H -0.01 -0.82 8.10 -2.39 -0.02 -0.84 16 33 H 0.03 1.84 6.80 -2.39 -0.02 1.82 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.08 2.19 5.42 -2.39 -0.01 2.18 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.58 7.06 -2.39 -0.02 1.57 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.36 5.93 -2.39 -0.01 1.34 16 43 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.12 2.11 7.69 -2.39 -0.02 2.09 16 45 H 0.12 2.08 7.94 -2.39 -0.02 2.06 16 46 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 47 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 48 H 0.15 2.78 8.06 -2.92 -0.02 2.76 16 49 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 50 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 51 H 0.07 2.41 5.98 -2.39 -0.01 2.39 16 52 H 0.04 2.26 6.63 -2.38 -0.02 2.25 16 Total: -1.00 -84.09 401.98 5.05 -79.04 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.90 Total: 16.98 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.01 Total: -0.28 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.81 Total: -114.92 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.07 Total: -32.74 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.03 Total: 51.92 kcal Total: -84.09 5.05 -79.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963265374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.756 kcal (2) G-P(sol) polarization free energy of solvation -84.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds