Wall clock time and date at job start Sat Apr 11 2020 07:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99712 * 2 1 4 4 H 1.48495 * 109.46969 * 274.96408 * 3 2 1 5 5 H 1.48494 * 109.46994 * 34.96190 * 3 2 1 6 6 H 1.48499 * 109.46950 * 154.96260 * 3 2 1 7 7 C 1.38810 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99879 * 164.15090 * 7 2 1 9 9 N 1.36932 * 119.99915 * 344.15087 * 7 2 1 10 10 C 1.47171 * 121.07639 * 153.75679 * 9 7 2 11 11 C 1.53279 * 108.56673 * 128.75968 * 10 9 7 12 12 O 1.43125 * 109.23066 * 52.98469 * 11 10 9 13 13 C 1.41883 * 114.37353 * 299.11009 * 12 11 10 14 14 C 1.54374 * 110.71083 * 296.71836 * 13 12 11 15 15 C 1.54459 * 102.87015 * 276.30082 * 14 13 12 16 16 N 1.47083 * 107.29455 * 338.50348 * 15 14 13 17 17 C 1.34782 * 125.62599 * 179.05402 * 16 15 14 18 18 O 1.21286 * 119.99523 * 179.97438 * 17 16 15 19 19 C 1.50693 * 120.00054 * 359.97359 * 17 16 15 20 20 H 1.08998 * 109.45880 * 60.00190 * 19 17 16 21 21 C 1.53034 * 109.45933 * 300.03068 * 19 17 16 22 22 C 1.53397 * 109.55244 * 239.97324 * 21 19 17 23 23 H 1.08999 * 110.76627 * 177.77235 * 22 21 19 24 24 C 1.52153 * 107.84418 * 55.70654 * 22 21 19 25 25 C 1.33033 * 113.76613 * 301.73501 * 24 22 21 26 26 C 1.52151 * 113.76196 * 359.97438 * 25 24 22 27 27 H 1.09004 * 111.34004 * 180.02562 * 26 25 24 28 28 C 1.53489 * 107.69999 * 301.60675 * 26 25 24 29 29 C 1.53021 * 109.52681 * 55.79843 * 28 26 25 30 30 C 1.47570 * 108.74413 * 359.01959 * 16 15 14 31 31 C 1.47333 * 121.07765 * 333.73535 * 9 7 2 32 32 H 0.97000 * 119.99881 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.62426 * 9.02887 * 10 9 7 34 34 H 1.09009 * 109.61750 * 248.47853 * 10 9 7 35 35 H 1.09005 * 109.50657 * 293.06139 * 11 10 9 36 36 H 1.08997 * 109.50835 * 172.91562 * 11 10 9 37 37 H 1.08997 * 110.73573 * 34.64662 * 14 13 12 38 38 H 1.09001 * 110.73398 * 157.77673 * 14 13 12 39 39 H 1.08995 * 109.87635 * 97.93057 * 15 14 13 40 40 H 1.08997 * 109.87979 * 218.93213 * 15 14 13 41 41 H 1.08997 * 109.45864 * 0.02562 * 21 19 17 42 42 H 1.09012 * 109.45517 * 119.95485 * 21 19 17 43 43 H 1.08007 * 123.12271 * 121.68179 * 24 22 21 44 44 H 1.07991 * 123.11390 * 179.97438 * 25 24 22 45 45 H 1.09000 * 109.46052 * 295.79084 * 28 26 25 46 46 H 1.08997 * 109.47324 * 175.82148 * 28 26 25 47 47 H 1.08989 * 109.46519 * 239.99091 * 29 28 26 48 48 H 1.09004 * 109.45896 * 120.02626 * 29 28 26 49 49 H 1.09009 * 110.37422 * 264.47540 * 30 16 15 50 50 H 1.09003 * 110.37721 * 142.12933 * 30 16 15 51 51 H 1.08992 * 109.67883 * 348.92963 * 31 9 7 52 52 H 1.08994 * 109.68012 * 109.47451 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3927 2.1071 -1.3948 5 1 1.5040 2.6201 0.8023 6 1 3.5963 1.4123 0.5925 7 6 2.0104 -1.2021 0.0005 8 1 3.0596 -1.2199 -0.2549 9 7 1.3648 -2.3653 0.3249 10 6 1.8353 -3.6630 -0.1854 11 6 1.9814 -4.6282 0.9964 12 8 0.7555 -4.6586 1.7345 13 6 0.3716 -3.4079 2.2836 14 6 1.4101 -2.9241 3.3183 15 6 0.9801 -3.6592 4.6069 16 7 -0.4328 -4.0347 4.4454 17 6 -1.1736 -4.7099 5.3464 18 8 -2.3347 -4.9661 5.1068 19 6 -0.5594 -5.1463 6.6515 20 1 -0.2112 -4.2709 7.1996 21 6 0.6231 -6.0768 6.3724 22 6 0.3660 -7.4426 7.0217 23 1 1.1793 -8.1342 6.8019 24 6 -0.9628 -7.9657 6.4965 25 6 -1.9909 -7.1569 6.7388 26 6 -1.6098 -5.8885 7.4878 27 1 -2.4798 -5.2562 7.6654 28 6 -0.9621 -6.3070 8.8148 29 6 0.2204 -7.2374 8.5359 30 6 -0.9055 -3.5496 3.1343 31 6 0.1769 -2.3583 1.1965 32 1 -0.4850 0.8401 -0.0004 33 1 2.8006 -3.5355 -0.6754 34 1 1.1109 -4.0613 -0.8959 35 1 2.7889 -4.2894 1.6454 36 1 2.2072 -5.6276 0.6243 37 1 2.4164 -3.2203 3.0226 38 1 1.3501 -1.8436 3.4489 39 1 1.5880 -4.5534 4.7438 40 1 1.0943 -2.9984 5.4662 41 1 0.7403 -6.2022 5.2961 42 1 1.5326 -5.6427 6.7880 43 1 -1.0621 -8.9061 5.9746 44 1 -3.0020 -7.3800 6.4322 45 1 -1.6966 -6.8277 9.4292 46 1 -0.6101 -5.4207 9.3428 47 1 0.0470 -8.1995 9.0177 48 1 1.1336 -6.7926 8.9314 49 1 -1.3986 -2.5834 3.2424 50 1 -1.5834 -4.2743 2.6834 51 1 0.0619 -1.3749 1.6522 52 1 -0.7101 -2.5976 0.6100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972391621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:49 Heat of formation + Delta-G solvation = -30.207203 kcal Electronic energy + Delta-G solvation = -32688.972654 eV Core-core repulsion = 28654.241903 eV Total energy + Delta-G solvation = -4034.730752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.22231 -39.78073 -38.17354 -36.06195 -34.47695 -32.21331 -31.31981 -31.18202 -30.91246 -30.59102 -29.51273 -27.41911 -25.77504 -23.97023 -23.28211 -22.42961 -22.32175 -21.45217 -21.23557 -19.29467 -18.75083 -17.19717 -17.01493 -16.98674 -16.37373 -15.97685 -15.79499 -15.11450 -14.96146 -14.73029 -14.40953 -14.25845 -13.72580 -13.63703 -13.39755 -13.13866 -12.89643 -12.76023 -12.49278 -12.44295 -12.36193 -12.30717 -12.27440 -12.18767 -11.92614 -11.60639 -11.33711 -11.09044 -10.95897 -10.88751 -10.71725 -10.64283 -10.32568 -10.31850 -10.28610 -10.01592 -9.97997 -9.56591 -9.48535 -9.07527 -8.96636 -8.57809 -8.36811 -6.78158 -5.88412 -3.31803 2.23716 2.84323 3.16620 3.30554 3.38330 3.39459 4.17562 4.34380 4.38065 4.40437 4.49741 4.78801 4.89172 4.93084 5.02704 5.05991 5.09105 5.11813 5.24368 5.28082 5.33538 5.35291 5.39328 5.42416 5.54170 5.58855 5.70880 5.74700 5.77759 5.83912 5.85422 5.87969 5.92817 5.98903 6.02611 6.05024 6.05914 6.08016 6.15751 6.28167 6.31519 6.45638 6.51114 6.60178 6.64272 6.76554 6.91305 7.03270 7.41340 7.67107 7.75861 7.91819 8.28170 8.37966 9.06551 9.69503 10.27294 11.19921 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.002872 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.589335 B = 9747.224046 C =10044.209459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.593 5.593 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.374 6.374 13 C 0.086 3.914 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.611 5.611 17 C 0.533 3.467 18 O -0.540 6.540 19 C -0.096 4.096 20 H 0.095 0.905 21 C -0.107 4.107 22 C -0.058 4.058 23 H 0.081 0.919 24 C -0.181 4.181 25 C -0.126 4.126 26 C -0.042 4.042 27 H 0.086 0.914 28 C -0.113 4.113 29 C -0.113 4.113 30 C 0.124 3.876 31 C 0.164 3.836 32 H 0.255 0.745 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.097 0.903 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -12.467 16.389 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.316 5.316 10 C -0.017 4.017 11 C -0.032 4.032 12 O -0.293 6.293 13 C 0.044 3.956 14 C -0.182 4.182 15 C -0.022 4.022 16 N -0.344 5.344 17 C 0.321 3.679 18 O -0.417 6.417 19 C -0.117 4.117 20 H 0.113 0.887 21 C -0.145 4.145 22 C -0.076 4.076 23 H 0.099 0.901 24 C -0.199 4.199 25 C -0.144 4.144 26 C -0.061 4.061 27 H 0.104 0.896 28 C -0.150 4.150 29 C -0.150 4.150 30 C 0.002 3.998 31 C 0.037 3.963 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.115 0.885 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.564 -12.630 16.338 20.710 hybrid contribution 0.641 1.180 -0.322 1.381 sum 2.205 -11.450 16.016 19.811 Atomic orbital electron populations 1.70009 1.05215 1.25677 1.53824 1.25048 0.95340 0.98397 1.00790 0.86275 0.79137 0.83626 0.77724 1.21405 1.21483 1.20384 1.19155 0.92223 0.84230 1.42551 0.91392 1.44067 1.32318 1.01395 1.53870 1.21595 0.98613 0.87625 0.93906 1.23091 0.86344 0.99660 0.94063 1.87658 1.41060 1.30345 1.70202 1.22685 0.92495 0.86559 0.93847 1.23027 1.00729 1.01132 0.93354 1.22187 0.81943 0.99044 0.99017 1.48524 1.12217 1.55528 1.18169 1.20173 0.85872 0.76943 0.84864 1.90671 1.16864 1.55831 1.78369 1.21426 0.96870 0.99396 0.94009 0.88681 1.21757 0.96512 0.94361 1.01837 1.20633 0.96220 0.96103 0.94688 0.90054 1.23680 0.94377 0.99734 1.02102 1.23648 0.98615 0.94403 0.97706 1.20476 0.96989 0.95183 0.93477 0.89551 1.21677 0.97595 0.99486 0.96252 1.21683 0.98327 0.99717 0.95279 1.22078 0.96099 1.00140 0.81500 1.21133 0.89311 0.96574 0.89268 0.93445 0.91935 0.95579 0.93510 0.90031 0.89637 0.89490 0.91428 0.91922 0.90707 0.90879 0.86557 0.86321 0.91538 0.91621 0.91853 0.91711 0.89847 0.89938 0.88450 0.95254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 11.11 55.49 0.62 -24.57 16 2 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 3 Si 0.90 20.78 29.58 -169.99 -5.03 15.75 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.25 -6.56 9.66 -15.06 -0.15 -6.70 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.16 2.98 -172.24 -0.51 -14.68 16 10 C 0.11 2.21 6.71 -3.53 -0.02 2.18 16 11 C 0.05 0.80 6.78 37.30 0.25 1.05 16 12 O -0.37 -7.14 10.28 -35.22 -0.36 -7.51 16 13 C 0.09 1.61 0.84 -89.65 -0.08 1.54 16 14 C -0.14 -2.35 5.87 -25.25 -0.15 -2.50 16 15 C 0.10 1.36 6.01 -2.96 -0.02 1.35 16 16 N -0.61 -9.58 3.24 -170.78 -0.55 -10.13 16 17 C 0.53 8.32 6.68 -10.99 -0.07 8.25 16 18 O -0.54 -10.17 15.25 5.55 0.08 -10.08 16 19 C -0.10 -1.11 2.05 -91.54 -0.19 -1.30 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.11 -1.11 3.76 -26.51 -0.10 -1.21 16 22 C -0.06 -0.55 3.58 -90.59 -0.32 -0.87 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.18 -2.01 9.81 -35.40 -0.35 -2.36 16 25 C -0.13 -1.52 8.26 -35.40 -0.29 -1.82 16 26 C -0.04 -0.47 2.68 -90.59 -0.24 -0.71 16 27 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 28 C -0.11 -0.95 5.67 -26.47 -0.15 -1.10 16 29 C -0.11 -0.90 5.67 -26.46 -0.15 -1.05 16 30 C 0.12 2.22 6.08 -2.88 -0.02 2.20 16 31 C 0.16 3.74 4.06 -3.91 -0.02 3.72 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 34 H 0.03 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.05 0.77 6.22 -51.93 -0.32 0.45 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.38 6.07 -51.93 -0.32 1.07 16 38 H 0.09 1.49 7.82 -51.93 -0.41 1.09 16 39 H 0.07 0.83 6.02 -51.93 -0.31 0.52 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 42 H 0.07 0.62 8.13 -51.92 -0.42 0.20 16 43 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.48 8.14 -51.94 -0.42 0.05 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 1.48 8.00 -51.92 -0.42 1.07 16 50 H 0.08 1.59 8.06 -51.93 -0.42 1.17 16 51 H 0.10 2.43 5.95 -51.93 -0.31 2.12 16 52 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -30.40 385.31 -10.80 -41.21 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.71 Total: 3.54 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.15 Total: 0.66 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.45 Total: -49.38 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.28 Total: -17.59 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.40 -10.80 -41.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972391621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.998 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds