Wall clock time and date at job start Sat Apr 11 2020 07:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48496 * 109.46787 * 270.00051 * 3 2 1 5 5 H 1.48499 * 109.47002 * 29.99820 * 3 2 1 6 6 H 1.48503 * 109.46891 * 149.99957 * 3 2 1 7 7 C 1.38816 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 196.72628 * 7 2 1 9 9 N 1.36938 * 120.00109 * 16.72540 * 7 2 1 10 10 C 1.47166 * 121.08024 * 205.65756 * 9 7 2 11 11 C 1.53280 * 108.55594 * 231.27965 * 10 9 7 12 12 O 1.43117 * 109.22130 * 306.96899 * 11 10 9 13 13 C 1.41965 * 114.41237 * 60.89260 * 12 11 10 14 14 C 1.54357 * 110.78392 * 176.76366 * 13 12 11 15 15 C 1.54468 * 102.87733 * 276.30756 * 14 13 12 16 16 N 1.47083 * 107.29094 * 338.50959 * 15 14 13 17 17 C 1.34780 * 125.62626 * 178.98644 * 16 15 14 18 18 O 1.21283 * 119.99766 * 179.97438 * 17 16 15 19 19 C 1.50693 * 120.00166 * 359.97099 * 17 16 15 20 20 H 1.08997 * 115.50829 * 34.41658 * 19 17 16 21 21 C 1.53006 * 117.42974 * 179.77415 * 19 17 16 22 22 H 1.08997 * 119.98725 * 355.25679 * 21 19 17 23 23 C 1.53006 * 117.42914 * 249.06020 * 19 17 16 24 24 H 1.09002 * 119.98570 * 4.74595 * 23 19 17 25 25 C 1.55923 * 117.17237 * 160.65920 * 23 19 17 26 26 H 1.08998 * 115.92229 * 263.05567 * 25 23 19 27 27 C 1.55927 * 104.49497 * 133.36424 * 25 23 19 28 28 C 1.54214 * 104.68478 * 289.74656 * 27 25 23 29 29 C 1.55926 * 104.68628 * 359.97438 * 28 27 25 30 30 H 1.08998 * 116.52504 * 199.57988 * 29 28 27 31 31 C 1.56952 * 100.65176 * 326.20192 * 29 28 27 32 32 C 1.47569 * 108.74222 * 359.00117 * 16 15 14 33 33 C 1.47330 * 121.07949 * 25.68414 * 9 7 2 34 34 H 0.96998 * 119.99953 * 0.02562 * 1 2 3 35 35 H 1.09001 * 109.62284 * 351.00047 * 10 9 7 36 36 H 1.09000 * 109.62522 * 111.36931 * 10 9 7 37 37 H 1.09004 * 109.51024 * 66.89833 * 11 10 9 38 38 H 1.08997 * 109.51198 * 186.99372 * 11 10 9 39 39 H 1.08999 * 110.73704 * 34.65920 * 14 13 12 40 40 H 1.09007 * 110.73283 * 157.96684 * 14 13 12 41 41 H 1.08998 * 109.87359 * 97.92858 * 15 14 13 42 42 H 1.08996 * 109.88110 * 218.93333 * 15 14 13 43 43 H 1.08992 * 110.40591 * 48.51543 * 27 25 23 44 44 H 1.09002 * 110.40097 * 170.93548 * 27 25 23 45 45 H 1.08995 * 110.40362 * 241.18275 * 28 27 25 46 46 H 1.08997 * 110.35854 * 118.79169 * 28 27 25 47 47 H 1.09004 * 112.03481 * 296.83071 * 31 29 28 48 48 H 1.08997 * 112.16218 * 170.27332 * 31 29 28 49 49 H 1.09001 * 110.37762 * 264.49433 * 32 16 15 50 50 H 1.09001 * 110.37638 * 142.14941 * 32 16 15 51 51 H 1.09004 * 109.66924 * 250.55760 * 33 9 7 52 52 H 1.08998 * 109.67117 * 11.04641 * 33 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0559 -1.2219 0.2697 9 7 1.3689 -2.3632 -0.3402 10 6 1.8402 -3.6656 0.1571 11 6 1.9948 -4.6162 -1.0353 12 8 0.7724 -4.6415 -1.7793 13 6 0.3861 -3.3852 -2.3159 14 6 -0.8947 -3.5234 -3.1663 15 6 -0.3496 -3.9785 -4.5381 16 7 1.0660 -3.5838 -4.5988 17 6 1.9033 -3.8196 -5.6283 18 8 3.0559 -3.4469 -5.5700 19 6 1.4074 -4.5465 -6.8516 20 1 0.3712 -4.3498 -7.1266 21 6 2.4063 -4.7780 -7.9872 22 1 3.4089 -4.3549 -7.9256 23 6 1.9474 -5.9562 -7.1011 24 1 2.6020 -6.4266 -6.3673 25 6 1.1272 -6.8738 -8.0585 26 1 0.4418 -7.5720 -7.5782 27 6 2.1926 -7.4907 -9.0155 28 6 2.6510 -6.3140 -9.9006 29 6 1.8202 -5.0940 -9.3978 30 1 1.7367 -4.2477 -10.0796 31 6 0.4762 -5.8015 -9.0023 32 6 1.4182 -2.8873 -3.3464 33 6 0.1851 -2.3490 -1.2172 34 1 -0.4850 0.8400 -0.0004 35 1 2.8027 -3.5414 0.6535 36 1 1.1149 -4.0726 0.8617 37 1 2.8042 -4.2673 -1.6765 38 1 2.2229 -5.6190 -0.6742 39 1 -1.5582 -4.2786 -2.7449 40 1 -1.4056 -2.5644 -3.2530 41 1 -0.4369 -5.0610 -4.6309 42 1 -0.9071 -3.4918 -5.3384 43 1 3.0328 -7.8857 -8.4447 44 1 1.7455 -8.2745 -9.6270 45 1 2.4300 -6.5179 -10.9482 46 1 3.7168 -6.1302 -9.7650 47 1 -0.0145 -6.2574 -9.8623 48 1 -0.1957 -5.1351 -8.4615 49 1 1.3349 -1.8082 -3.4759 50 1 2.4271 -3.1561 -3.0334 51 1 -0.7041 -2.5966 -0.6373 52 1 0.0696 -1.3605 -1.6617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972691518.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:54 Heat of formation + Delta-G solvation = -21.269377 kcal Electronic energy + Delta-G solvation = -32154.922990 eV Core-core repulsion = 28120.579812 eV Total energy + Delta-G solvation = -4034.343178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.41819 -41.40677 -39.78637 -37.57767 -36.29816 -34.54702 -33.35014 -33.04618 -30.47073 -29.84310 -29.48618 -28.92321 -27.87007 -25.58145 -24.98292 -24.07423 -22.67525 -22.58105 -21.09982 -20.41858 -19.67911 -19.51683 -18.94279 -18.61185 -17.69698 -17.09227 -16.90715 -16.67701 -16.43907 -16.22891 -16.00506 -15.74483 -15.23876 -15.14795 -14.78769 -14.58471 -14.41130 -13.95194 -13.72199 -13.57859 -13.35274 -13.19463 -13.03131 -12.89358 -12.70449 -12.55206 -12.45418 -12.42339 -12.29641 -12.18812 -12.16415 -12.16322 -12.00877 -11.83451 -11.80111 -11.21552 -11.19502 -11.02086 -10.82187 -10.74882 -10.60841 -10.54180 -9.70553 -8.76867 -7.94465 -5.39165 1.35797 1.41333 1.44237 1.51427 1.82554 2.43250 2.71213 2.76309 3.14905 3.22766 3.40200 3.53281 3.55446 3.59311 3.69501 3.92041 3.95303 4.00133 4.03143 4.15334 4.17962 4.24872 4.28339 4.29524 4.46656 4.46975 4.48342 4.53802 4.59503 4.62547 4.70036 4.70531 4.77341 4.87038 4.87987 4.98669 5.01165 5.06142 5.07358 5.11859 5.19318 5.20129 5.21814 5.24136 5.26081 5.27955 5.40297 5.48053 5.52444 5.57369 6.24916 6.31564 6.48186 7.03899 7.04793 7.71253 8.25006 9.11681 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018079 B = 0.002777 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.411535 B =10080.284256 C =10562.082126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.961 3.039 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.615 5.615 10 C 0.107 3.893 11 C 0.053 3.947 12 O -0.371 6.371 13 C 0.091 3.909 14 C -0.111 4.111 15 C 0.108 3.892 16 N -0.609 5.609 17 C 0.546 3.454 18 O -0.597 6.597 19 C -0.159 4.159 20 H 0.150 0.850 21 C -0.139 4.139 22 H 0.093 0.907 23 C -0.129 4.129 24 H 0.095 0.905 25 C -0.064 4.064 26 H 0.118 0.882 27 C -0.116 4.116 28 C -0.117 4.117 29 C -0.069 4.069 30 H 0.110 0.890 31 C -0.131 4.131 32 C 0.105 3.895 33 C 0.173 3.827 34 H 0.253 0.747 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.033 0.967 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.051 0.949 51 H 0.013 0.987 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 -16.130 -19.956 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.789 3.211 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.339 5.339 10 C -0.019 4.019 11 C -0.025 4.025 12 O -0.290 6.290 13 C 0.049 3.951 14 C -0.149 4.149 15 C -0.013 4.013 16 N -0.340 5.340 17 C 0.337 3.663 18 O -0.479 6.479 19 C -0.179 4.179 20 H 0.167 0.833 21 C -0.158 4.158 22 H 0.111 0.889 23 C -0.148 4.148 24 H 0.113 0.887 25 C -0.082 4.082 26 H 0.136 0.864 27 C -0.154 4.154 28 C -0.154 4.154 29 C -0.087 4.087 30 H 0.128 0.872 31 C -0.168 4.168 32 C -0.019 4.019 33 C 0.047 3.953 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.031 0.969 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.256 -15.992 -19.981 25.799 hybrid contribution 1.175 1.830 1.080 2.429 sum -2.080 -14.162 -18.902 23.710 Atomic orbital electron populations 1.70127 1.06215 1.26015 1.55130 1.25660 0.96142 1.00992 1.01133 0.85362 0.78256 0.79998 0.77450 1.21592 1.21519 1.19621 1.19445 0.92715 0.85709 1.41441 0.91744 1.44384 1.32978 1.01962 1.54618 1.21734 0.98672 0.86481 0.94984 1.23084 0.85910 1.00977 0.92523 1.87632 1.41479 1.29652 1.70202 1.22530 0.94537 0.85491 0.92513 1.22621 0.95126 1.04305 0.92845 1.22277 0.79253 1.01630 0.98187 1.48585 1.12912 1.56446 1.16098 1.20072 0.84046 0.78657 0.83503 1.90659 1.20270 1.55082 1.81901 1.22232 1.01701 1.00139 0.93840 0.83256 1.23651 0.98142 1.01904 0.92058 0.88929 1.23650 1.02472 0.88292 1.00383 0.88670 1.23270 0.95850 0.95902 0.93162 0.86387 1.22475 0.98030 0.97730 0.97141 1.22473 0.99075 0.93862 0.99999 1.23263 0.95433 0.97671 0.92357 0.87230 1.23782 0.95984 0.97288 0.99757 1.22361 0.99470 0.95817 0.84228 1.20963 0.88181 0.96752 0.89387 0.93778 0.91474 0.95462 0.94881 0.86167 0.87153 0.88502 0.89099 0.88329 0.92508 0.89531 0.89700 0.92729 0.88598 0.90318 0.92936 0.93026 0.96853 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 11.12 21.65 0.24 -53.53 16 2 C -0.04 -2.42 4.96 84.86 0.42 -2.00 16 3 Si 0.96 45.51 29.59 68.60 2.03 47.54 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.26 -14.66 9.66 84.03 0.81 -13.85 16 8 H 0.06 3.56 7.88 -2.91 -0.02 3.53 16 9 N -0.61 -31.25 2.99 -698.86 -2.09 -33.34 16 10 C 0.11 4.52 6.71 86.35 0.58 5.10 16 11 C 0.05 1.92 6.79 72.08 0.49 2.41 16 12 O -0.37 -13.92 10.28 -148.97 -1.53 -15.45 16 13 C 0.09 3.47 0.83 -10.17 -0.01 3.46 16 14 C -0.11 -3.09 6.12 31.55 0.19 -2.90 16 15 C 0.11 2.56 6.29 86.77 0.55 3.10 16 16 N -0.61 -20.12 3.33 -812.56 -2.71 -22.83 16 17 C 0.55 18.73 7.63 87.65 0.67 19.40 16 18 O -0.60 -26.23 16.62 -3.04 -0.05 -26.28 16 19 C -0.16 -3.73 4.75 -11.54 -0.05 -3.79 16 20 H 0.15 2.66 5.60 -2.39 -0.01 2.65 16 21 C -0.14 -3.09 5.93 -9.28 -0.06 -3.14 16 22 H 0.09 2.60 7.82 -2.39 -0.02 2.58 16 23 C -0.13 -2.65 6.19 -9.30 -0.06 -2.71 16 24 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 25 C -0.06 -0.82 5.18 -7.37 -0.04 -0.86 16 26 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 27 C -0.12 -1.38 6.19 32.02 0.20 -1.19 16 28 C -0.12 -1.47 6.19 32.02 0.20 -1.27 16 29 C -0.07 -1.00 5.18 -7.36 -0.04 -1.04 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 C -0.13 -1.46 6.24 33.38 0.21 -1.25 16 32 C 0.10 4.24 5.85 86.55 0.51 4.75 16 33 C 0.17 8.21 4.07 86.01 0.35 8.56 16 34 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 35 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.03 1.31 6.26 -2.38 -0.01 1.30 16 38 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.10 2.62 8.00 -2.38 -0.02 2.60 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.10 1.74 8.06 -2.39 -0.02 1.72 16 43 H 0.06 0.79 8.04 -2.39 -0.02 0.77 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.82 8.04 -2.39 -0.02 0.80 16 47 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.08 0.86 5.93 -2.39 -0.01 0.85 16 49 H 0.05 2.36 7.82 -2.39 -0.02 2.34 16 50 H 0.05 2.38 6.01 -2.39 -0.01 2.37 16 51 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 52 H 0.07 3.65 5.93 -2.39 -0.01 3.64 16 Total: -1.00 -72.34 391.23 1.72 -70.62 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.91 Total: 20.46 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 4.92 Total: 12.81 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.56 Total: -109.70 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.58 Total: -41.73 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.34 1.72 -70.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972691518.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.349 kcal (2) G-P(sol) polarization free energy of solvation -72.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds