Wall clock time and date at job start Sat Apr 11 2020 07:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99744 * 2 1 4 4 H 1.48505 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47100 * 299.99918 * 3 2 1 6 6 H 1.48498 * 109.47568 * 60.00217 * 3 2 1 7 7 C 1.38809 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00445 * 196.76930 * 7 2 1 9 9 N 1.36940 * 119.99393 * 16.77549 * 7 2 1 10 10 C 1.47157 * 121.05573 * 205.75799 * 9 7 2 11 11 C 1.53290 * 108.52878 * 231.15441 * 10 9 7 12 12 O 1.43094 * 109.21892 * 307.09846 * 11 10 9 13 13 C 1.42141 * 114.34521 * 61.18908 * 12 11 10 14 14 C 1.54521 * 110.33057 * 61.88961 * 13 12 11 15 15 C 1.55012 * 101.50938 * 84.03019 * 14 13 12 16 16 N 1.47474 * 104.91352 * 36.35759 * 15 14 13 17 17 C 1.34774 * 125.65229 * 156.00053 * 16 15 14 18 18 O 1.21283 * 119.99364 * 179.97438 * 17 16 15 19 19 C 1.50697 * 120.00148 * 359.97438 * 17 16 15 20 20 H 1.08990 * 115.50857 * 34.64305 * 19 17 16 21 21 C 1.53003 * 117.42575 * 179.97438 * 19 17 16 22 22 H 1.08996 * 119.98967 * 354.14457 * 21 19 17 23 23 C 1.53000 * 117.42633 * 249.38003 * 19 17 16 24 24 H 1.09002 * 119.98972 * 4.74851 * 23 19 17 25 25 C 1.55925 * 117.17511 * 160.66731 * 23 19 17 26 26 H 1.08999 * 116.53558 * 262.67991 * 25 23 19 27 27 C 1.55928 * 104.49990 * 133.35191 * 25 23 19 28 28 C 1.54590 * 104.64471 * 289.72284 * 27 25 23 29 29 C 1.55926 * 104.64125 * 359.97438 * 28 27 25 30 30 H 1.08995 * 116.52727 * 199.59928 * 29 28 27 31 31 C 1.56950 * 100.65153 * 326.22162 * 29 28 27 32 32 C 1.47190 * 108.68626 * 335.97740 * 16 15 14 33 33 C 1.47296 * 121.06513 * 25.77560 * 9 7 2 34 34 H 0.97001 * 120.00200 * 359.97438 * 1 2 3 35 35 H 1.08996 * 109.63104 * 350.86947 * 10 9 7 36 36 H 1.08997 * 109.62793 * 111.24954 * 10 9 7 37 37 H 1.09000 * 109.51091 * 67.02707 * 11 10 9 38 38 H 1.09004 * 109.51332 * 187.12529 * 11 10 9 39 39 H 1.08996 * 111.02113 * 202.08825 * 14 13 12 40 40 H 1.09001 * 111.01226 * 325.97506 * 14 13 12 41 41 H 1.08992 * 110.35190 * 155.21920 * 15 14 13 42 42 H 1.09003 * 110.35348 * 277.38982 * 15 14 13 43 43 H 1.08995 * 110.40295 * 48.51106 * 27 25 23 44 44 H 1.09000 * 110.40459 * 170.93102 * 27 25 23 45 45 H 1.08997 * 110.39636 * 241.20992 * 28 27 25 46 46 H 1.08999 * 110.40113 * 118.79490 * 28 27 25 47 47 H 1.09005 * 112.02339 * 170.30974 * 31 29 28 48 48 H 1.08998 * 112.02696 * 296.75046 * 31 29 28 49 49 H 1.09000 * 109.91340 * 242.15422 * 32 16 15 50 50 H 1.09007 * 109.90713 * 120.88319 * 32 16 15 51 51 H 1.08992 * 109.68290 * 250.28714 * 33 9 7 52 52 H 1.08998 * 109.67908 * 10.80458 * 33 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0558 -1.2218 0.2704 9 7 1.3693 -2.3629 -0.3413 10 6 1.8393 -3.6650 0.1579 11 6 1.9932 -4.6168 -1.0338 12 8 0.7721 -4.6393 -1.7794 13 6 0.3942 -3.3814 -2.3229 14 6 1.4640 -2.8846 -3.3211 15 6 1.0407 -3.6187 -4.6191 16 7 -0.4336 -3.6337 -4.5830 17 6 -1.2445 -3.7403 -5.6541 18 8 -2.4482 -3.7422 -5.5055 19 6 -0.6557 -3.8571 -7.0364 20 1 0.2796 -4.4126 -7.1027 21 6 -1.6303 -3.9756 -8.2099 22 1 -2.6999 -4.0695 -8.0224 23 6 -0.8367 -2.6681 -7.9822 24 1 -1.3060 -1.7524 -7.6227 25 6 0.1292 -2.5758 -9.2028 26 1 0.9963 -1.9252 -9.0895 27 6 -0.8017 -2.2657 -10.4147 28 6 -1.5953 -3.5726 -10.6424 29 6 -1.0687 -4.5494 -9.5470 30 1 -1.2408 -5.6119 -9.7188 31 6 0.4309 -4.0963 -9.4509 32 6 -0.8723 -3.5134 -3.1831 33 6 0.1876 -2.3481 -1.2205 34 1 -0.4850 0.8400 0.0004 35 1 2.8018 -3.5411 0.6542 36 1 1.1135 -4.0706 0.8628 37 1 2.8045 -4.2704 -1.6740 38 1 2.2181 -5.6201 -0.6718 39 1 1.4087 -1.8035 -3.4476 40 1 2.4625 -3.1893 -3.0075 41 1 1.3929 -3.0738 -5.4948 42 1 1.4317 -4.6361 -4.6240 43 1 -1.4794 -1.4468 -10.1735 44 1 -0.2091 -2.0224 -11.2966 45 1 -1.3928 -3.9718 -11.6362 46 1 -2.6632 -3.3961 -10.5132 47 1 0.9430 -4.5547 -8.6049 48 1 0.9683 -4.2609 -10.3848 49 1 -1.4287 -4.4039 -2.8906 50 1 -1.4959 -2.6273 -3.0644 51 1 -0.7023 -2.5998 -0.6437 52 1 0.0711 -1.3585 -1.6621 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972691524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:57 Heat of formation + Delta-G solvation = -19.490931 kcal Electronic energy + Delta-G solvation = -31956.418704 eV Core-core repulsion = 27922.152644 eV Total energy + Delta-G solvation = -4034.266059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40448 -41.39224 -39.85792 -37.54634 -36.27936 -34.54093 -33.27542 -32.83654 -30.90662 -29.85668 -29.25777 -28.89794 -27.79979 -25.59841 -25.00179 -23.83311 -22.94059 -22.59542 -20.98571 -20.48719 -19.60036 -19.50022 -18.97753 -18.64140 -17.56680 -17.09659 -16.94714 -16.62698 -16.48131 -16.18091 -15.95918 -15.75183 -15.29235 -15.21663 -14.59445 -14.48116 -14.34846 -13.91988 -13.82877 -13.64362 -13.46433 -13.21359 -13.11720 -12.86163 -12.67041 -12.49820 -12.46560 -12.41848 -12.34789 -12.16231 -12.11742 -12.01013 -11.87244 -11.82964 -11.79204 -11.21598 -11.16942 -11.04108 -10.78987 -10.75258 -10.59807 -10.48096 -9.78817 -8.74990 -7.90804 -5.37088 1.34291 1.45117 1.47572 1.57670 1.76571 2.46946 2.71889 2.75101 3.16341 3.23279 3.39575 3.52753 3.56261 3.57266 3.76291 3.94015 3.96163 3.97132 4.01974 4.15581 4.22112 4.27574 4.29759 4.37047 4.45678 4.46814 4.49795 4.51233 4.59666 4.62160 4.67643 4.70478 4.75613 4.86403 4.90511 5.00082 5.02449 5.06947 5.08333 5.13497 5.15168 5.21034 5.24041 5.25181 5.26178 5.26468 5.40159 5.48408 5.52120 5.61195 6.27759 6.35509 6.44713 7.01846 7.04966 7.74370 8.28942 9.15645 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.002830 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.842478 B = 9891.009606 C =10766.867235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.254 4.254 8 H 0.078 0.922 9 N -0.608 5.608 10 C 0.101 3.899 11 C 0.053 3.947 12 O -0.383 6.383 13 C 0.097 3.903 14 C -0.136 4.136 15 C 0.110 3.890 16 N -0.609 5.609 17 C 0.550 3.450 18 O -0.591 6.591 19 C -0.160 4.160 20 H 0.149 0.851 21 C -0.134 4.134 22 H 0.097 0.903 23 C -0.133 4.133 24 H 0.095 0.905 25 C -0.067 4.067 26 H 0.115 0.885 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.069 4.069 30 H 0.112 0.888 31 C -0.131 4.131 32 C 0.130 3.870 33 C 0.175 3.825 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.012 0.988 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.065 0.935 50 H 0.061 0.939 51 H -0.012 1.012 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -9.804 -22.003 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.384 4.384 8 H 0.096 0.904 9 N -0.332 5.332 10 C -0.024 4.024 11 C -0.024 4.024 12 O -0.302 6.302 13 C 0.055 3.945 14 C -0.174 4.174 15 C -0.011 4.011 16 N -0.341 5.341 17 C 0.341 3.659 18 O -0.473 6.473 19 C -0.180 4.180 20 H 0.167 0.833 21 C -0.153 4.153 22 H 0.115 0.885 23 C -0.151 4.151 24 H 0.114 0.886 25 C -0.085 4.085 26 H 0.133 0.867 27 C -0.155 4.155 28 C -0.154 4.154 29 C -0.087 4.087 30 H 0.130 0.870 31 C -0.168 4.168 32 C 0.006 3.994 33 C 0.049 3.951 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.030 0.970 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.006 0.994 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.054 -9.835 -21.996 24.619 hybrid contribution -0.538 1.499 1.339 2.080 sum 4.516 -8.337 -20.657 22.729 Atomic orbital electron populations 1.70196 1.06857 1.25800 1.55700 1.25808 0.95956 1.01620 1.01375 0.85211 0.78930 0.79789 0.76571 1.18371 1.21837 1.22432 1.19563 0.92987 0.85178 1.40663 0.90435 1.44338 1.32653 1.02289 1.53961 1.21825 0.98655 0.86508 0.95416 1.23207 0.85958 1.00839 0.92441 1.87688 1.42788 1.29455 1.70280 1.22268 0.93705 0.85384 0.93135 1.23076 0.99952 1.00415 0.93998 1.22527 0.77754 1.01820 0.98996 1.48548 1.08682 1.71543 1.05357 1.20014 0.85284 0.74910 0.85718 1.90659 1.16631 1.53093 1.86879 1.22233 1.03173 1.06195 0.86448 0.83334 1.23668 0.96797 1.00917 0.93893 0.88469 1.23676 1.02695 0.91594 0.97182 0.88639 1.23257 0.96278 0.97845 0.91093 0.86683 1.22557 0.97950 0.97402 0.97615 1.22534 0.99359 0.94897 0.98569 1.23270 0.95331 0.99163 0.90911 0.86961 1.23782 0.95648 0.94483 1.02922 1.21526 0.95757 1.01272 0.80811 1.20886 0.87970 0.96678 0.89598 0.94201 0.90508 0.96989 0.91666 0.86182 0.91350 0.88115 0.87815 0.89220 0.92583 0.89696 0.89714 0.92568 0.90322 0.88682 0.91633 0.92088 0.99352 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.44 11.12 21.65 0.24 -55.20 16 2 C -0.05 -2.86 4.96 84.86 0.42 -2.44 16 3 Si 0.97 43.69 29.59 68.60 2.03 45.72 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.25 -13.32 9.66 84.03 0.81 -12.51 16 8 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 9 N -0.61 -29.55 2.94 -698.71 -2.06 -31.60 16 10 C 0.10 3.99 6.72 86.35 0.58 4.57 16 11 C 0.05 1.64 6.76 72.08 0.49 2.13 16 12 O -0.38 -13.92 10.23 -148.98 -1.52 -15.44 16 13 C 0.10 3.70 0.84 -10.22 -0.01 3.69 16 14 C -0.14 -4.33 5.91 31.80 0.19 -4.14 16 15 C 0.11 2.76 6.48 86.88 0.56 3.33 16 16 N -0.61 -19.62 3.33 -812.34 -2.71 -22.33 16 17 C 0.55 18.11 7.63 87.66 0.67 18.78 16 18 O -0.59 -24.57 16.68 -3.04 -0.05 -24.62 16 19 C -0.16 -3.68 4.46 -11.54 -0.05 -3.73 16 20 H 0.15 2.62 5.65 -2.39 -0.01 2.61 16 21 C -0.13 -2.88 5.93 -9.21 -0.05 -2.93 16 22 H 0.10 2.59 7.83 -2.39 -0.02 2.57 16 23 C -0.13 -2.75 6.20 -9.22 -0.06 -2.81 16 24 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 25 C -0.07 -0.91 5.18 -7.37 -0.04 -0.95 16 26 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 27 C -0.12 -1.47 6.21 32.15 0.20 -1.27 16 28 C -0.12 -1.45 6.21 32.15 0.20 -1.25 16 29 C -0.07 -0.96 5.18 -7.37 -0.04 -1.00 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 C -0.13 -1.48 6.23 33.38 0.21 -1.28 16 32 C 0.13 4.97 6.24 86.47 0.54 5.51 16 33 C 0.18 8.52 3.94 86.06 0.34 8.86 16 34 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.08 2.77 7.96 -2.39 -0.02 2.76 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 1.86 6.13 -2.39 -0.01 1.84 16 38 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 39 H 0.07 2.43 7.86 -2.39 -0.02 2.42 16 40 H 0.10 2.96 5.98 -2.39 -0.01 2.95 16 41 H 0.10 2.03 7.68 -2.39 -0.02 2.01 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 0.82 8.04 -2.39 -0.02 0.81 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.83 8.04 -2.39 -0.02 0.81 16 47 H 0.08 0.88 5.92 -2.38 -0.01 0.86 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 2.59 8.06 -2.39 -0.02 2.57 16 50 H 0.06 2.58 7.79 -2.38 -0.02 2.56 16 51 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 52 H 0.07 3.66 5.96 -2.39 -0.01 3.65 16 Total: -1.00 -70.70 390.47 1.80 -68.90 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.91 Total: 22.02 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.96 Total: 12.55 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.52 Total: -109.13 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.57 Total: -40.06 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.70 1.80 -68.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972691524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.411 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds