Wall clock time and date at job start Sat Apr 11 2020 07:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48501 * 109.46849 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47164 * 299.99861 * 3 2 1 6 6 H 1.48497 * 109.47349 * 60.00024 * 3 2 1 7 7 C 1.38806 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00147 * 164.40148 * 7 2 1 9 9 N 1.36933 * 120.00438 * 344.39897 * 7 2 1 10 10 C 1.49274 * 122.53822 * 334.45932 * 9 7 2 11 11 C 1.53228 * 109.26658 * 231.32379 * 10 9 7 12 12 O 1.43076 * 109.44129 * 308.34049 * 11 10 9 13 13 C 1.42692 * 113.86897 * 61.65437 * 12 11 10 14 14 H 1.08995 * 108.38767 * 55.27461 * 13 12 11 15 15 C 1.52514 * 110.62251 * 174.63963 * 13 12 11 16 16 C 1.53155 * 109.79327 * 61.29692 * 15 13 12 17 17 N 1.45323 * 108.72621 * 53.83708 * 16 15 13 18 18 C 1.34779 * 119.60223 * 125.31749 * 17 16 15 19 19 O 1.21276 * 120.00250 * 181.41179 * 18 17 16 20 20 C 1.50709 * 120.00010 * 1.40814 * 18 17 16 21 21 H 1.08996 * 115.50299 * 325.58125 * 20 18 17 22 22 C 1.52992 * 117.43000 * 110.94093 * 20 18 17 23 23 H 1.09002 * 119.98765 * 355.25901 * 22 20 18 24 24 C 1.53001 * 117.42606 * 180.23016 * 20 18 17 25 25 H 1.08996 * 119.99168 * 5.85330 * 24 20 18 26 26 C 1.55928 * 117.16777 * 160.66189 * 24 20 18 27 27 H 1.08999 * 115.92214 * 263.04444 * 26 24 20 28 28 C 1.55931 * 104.49459 * 133.35803 * 26 24 20 29 29 C 1.54572 * 104.64438 * 289.72362 * 28 26 24 30 30 C 1.55928 * 104.64448 * 359.97438 * 29 28 26 31 31 H 1.08999 * 115.92386 * 199.97155 * 30 29 28 32 32 C 1.56947 * 100.65487 * 29.30316 * 26 24 20 33 33 C 1.46790 * 119.66056 * 306.71263 * 17 16 15 34 34 C 1.47588 * 121.22969 * 155.51021 * 9 7 2 35 35 H 1.09002 * 110.31105 * 6.66597 * 34 9 7 36 36 H 0.96999 * 120.00170 * 359.97438 * 1 2 3 37 37 H 1.08999 * 109.37619 * 111.34562 * 10 9 7 38 38 H 1.09001 * 109.38649 * 351.30311 * 10 9 7 39 39 H 1.08997 * 109.47348 * 188.35365 * 11 10 9 40 40 H 1.08999 * 109.47839 * 68.33330 * 11 10 9 41 41 H 1.08995 * 109.41841 * 181.39162 * 15 13 12 42 42 H 1.08997 * 109.41433 * 301.19652 * 15 13 12 43 43 H 1.09004 * 109.64117 * 174.21938 * 16 15 13 44 44 H 1.09006 * 109.64383 * 294.62678 * 16 15 13 45 45 H 1.09006 * 110.40012 * 48.51649 * 28 26 24 46 46 H 1.09003 * 110.40310 * 170.93083 * 28 26 24 47 47 H 1.09000 * 110.40315 * 241.20703 * 29 28 26 48 48 H 1.09003 * 110.40840 * 118.78433 * 29 28 26 49 49 H 1.08998 * 112.02547 * 170.30141 * 32 26 24 50 50 H 1.08998 * 112.02455 * 296.74685 * 32 26 24 51 51 H 1.09003 * 109.51900 * 292.98137 * 33 17 16 52 52 H 1.08999 * 109.52224 * 172.86216 * 33 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0604 -1.2193 -0.2521 9 7 1.3634 -2.3663 0.3179 10 6 0.1453 -2.3982 1.1801 11 6 0.3481 -3.4196 2.3042 12 8 0.7593 -4.6699 1.7431 13 6 2.0002 -4.6076 1.0413 14 1 2.7561 -4.2039 1.7148 15 6 2.4322 -5.9988 0.5896 16 6 1.3865 -6.5820 -0.3655 17 7 1.1624 -5.6362 -1.4458 18 6 1.3023 -6.0401 -2.7240 19 8 1.1422 -5.2506 -3.6305 20 6 1.6579 -7.4730 -3.0269 21 1 2.3221 -7.9536 -2.3086 22 6 0.5840 -8.3417 -3.6846 23 1 -0.4172 -7.9418 -3.8454 24 6 1.8072 -7.8663 -4.4979 25 1 1.7520 -7.1032 -5.2742 26 6 2.6047 -9.1696 -4.8090 27 1 3.6532 -9.0347 -5.0747 28 6 1.7178 -9.9333 -5.8393 29 6 0.4937 -10.4092 -5.0242 30 6 0.7566 -9.8889 -3.5780 31 1 0.2019 -10.3884 -2.7837 32 6 2.3202 -10.0012 -3.5087 33 6 0.8165 -4.2444 -1.1328 34 6 1.8565 -3.6717 -0.1628 35 1 2.8164 -3.5519 -0.6653 36 1 -0.4850 0.8400 0.0004 37 1 -0.7169 -2.6839 0.5776 38 1 -0.0200 -1.4100 1.6095 39 1 -0.5881 -3.5546 2.8457 40 1 1.1155 -3.0587 2.9891 41 1 3.3924 -5.9319 0.0783 42 1 2.5304 -6.6480 1.4596 43 1 1.7449 -7.5300 -0.7666 44 1 0.4501 -6.7412 0.1693 45 1 1.4040 -9.2639 -6.6404 46 1 2.2585 -10.7875 -6.2467 47 1 0.4326 -11.4975 -5.0309 48 1 -0.4220 -9.9739 -5.4244 49 1 2.6602 -11.0327 -3.6007 50 1 2.7268 -9.5206 -2.6190 51 1 -0.1703 -4.2094 -0.6711 52 1 0.8105 -3.6554 -2.0499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074415942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:12 Heat of formation + Delta-G solvation = -3.701990 kcal Electronic energy + Delta-G solvation = -32280.415481 eV Core-core repulsion = 28246.834082 eV Total energy + Delta-G solvation = -4033.581399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55700 -39.85869 -38.32784 -35.77174 -34.56500 -33.66025 -31.72313 -31.48049 -29.52362 -29.16917 -28.32169 -27.56148 -25.52501 -24.12318 -23.47382 -22.61624 -21.84583 -21.48228 -20.18500 -18.84131 -18.73103 -18.20488 -17.45924 -16.89157 -16.22911 -15.72258 -15.60588 -15.44810 -15.19898 -14.99873 -14.44759 -14.09147 -14.03833 -13.65307 -13.25683 -13.18499 -12.91466 -12.64563 -12.45499 -12.29478 -12.27792 -11.97854 -11.74659 -11.66240 -11.49698 -11.37227 -11.32923 -11.08638 -11.06705 -10.95797 -10.77633 -10.59004 -10.52835 -10.22267 -10.18751 -9.99649 -9.92544 -9.73736 -9.63240 -9.39261 -9.03018 -8.61650 -8.19292 -6.77626 -5.85922 -3.28281 2.69270 3.23108 3.34369 3.42036 3.44047 3.75094 4.11756 4.24524 4.27643 4.32225 4.41093 4.77095 4.82922 4.85157 4.92853 5.00208 5.07568 5.09341 5.14803 5.16532 5.26427 5.29793 5.33027 5.36354 5.47288 5.54366 5.64902 5.71958 5.72524 5.77438 5.77702 5.84933 5.88104 5.91055 6.00907 6.03296 6.05115 6.07935 6.11017 6.16470 6.19496 6.30624 6.34205 6.42534 6.71106 6.76031 6.99482 7.06953 7.45853 7.69280 7.79968 7.87428 8.26244 8.52746 9.05234 9.68903 10.28534 11.22962 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.002819 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.716407 B = 9931.363987 C =10762.022668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.586 5.586 10 C 0.132 3.868 11 C 0.041 3.959 12 O -0.388 6.388 13 C 0.081 3.919 14 H 0.051 0.949 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.597 5.597 18 C 0.537 3.463 19 O -0.543 6.543 20 C -0.164 4.164 21 H 0.125 0.875 22 C -0.134 4.134 23 H 0.115 0.885 24 C -0.130 4.130 25 H 0.123 0.877 26 C -0.074 4.074 27 H 0.101 0.899 28 C -0.117 4.117 29 C -0.117 4.117 30 C -0.072 4.072 31 H 0.101 0.899 32 C -0.138 4.138 33 C 0.108 3.892 34 C 0.133 3.867 35 H 0.072 0.928 36 H 0.255 0.745 37 H 0.031 0.969 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.068 0.932 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -22.315 -3.072 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.007 3.993 11 C -0.036 4.036 12 O -0.307 6.307 13 C 0.022 3.978 14 H 0.069 0.931 15 C -0.163 4.163 16 C -0.012 4.012 17 N -0.330 5.330 18 C 0.325 3.675 19 O -0.421 6.421 20 C -0.185 4.185 21 H 0.142 0.858 22 C -0.153 4.153 23 H 0.133 0.867 24 C -0.148 4.148 25 H 0.141 0.859 26 C -0.092 4.092 27 H 0.119 0.881 28 C -0.154 4.154 29 C -0.155 4.155 30 C -0.090 4.090 31 H 0.120 0.880 32 C -0.175 4.175 33 C -0.015 4.015 34 C 0.024 3.976 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.086 0.914 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.742 -21.823 -3.547 22.279 hybrid contribution 0.445 1.358 0.137 1.436 sum 3.187 -20.465 -3.411 20.990 Atomic orbital electron populations 1.70001 1.05221 1.25568 1.53782 1.25029 0.95391 0.98394 1.00691 0.86163 0.79276 0.83672 0.77313 1.20235 1.21592 1.21518 1.19188 0.92158 0.83937 1.42567 0.91216 1.44711 1.30941 1.00355 1.54859 1.21848 0.88516 0.98646 0.90265 1.23280 0.98611 0.85134 0.96607 1.87718 1.39005 1.32269 1.71703 1.22228 0.86518 0.94754 0.94347 0.93113 1.21825 0.98766 0.96310 0.99391 1.21382 0.99576 0.91822 0.88454 1.47794 1.68271 1.11899 1.05004 1.19598 0.76956 0.88280 0.82698 1.90688 1.51142 1.55174 1.45097 1.22393 1.04298 0.93925 0.97907 0.85752 1.23544 0.94563 0.93335 1.03852 0.86716 1.23547 0.99602 0.98619 0.93048 0.85925 1.23186 0.98084 0.92528 0.95434 0.88110 1.22512 0.95978 0.99334 0.97584 1.22527 0.98370 1.00046 0.94538 1.23181 0.96089 0.92569 0.97187 0.88041 1.23754 0.95642 1.00111 0.98009 1.22325 0.99714 0.78781 1.00725 1.21558 0.96662 0.87242 0.92109 0.90973 0.93526 0.95087 0.88472 0.89988 0.94092 0.90535 0.90459 0.90093 0.90907 0.91470 0.91682 0.91658 0.91524 0.90818 0.90613 0.91357 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.09 55.49 0.62 -25.20 16 2 C 0.00 0.10 5.06 -17.43 -0.09 0.02 16 3 Si 0.91 21.66 29.58 -169.99 -5.03 16.63 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.78 9.74 -15.06 -0.15 -6.93 16 8 H 0.07 1.88 7.88 -52.48 -0.41 1.46 16 9 N -0.59 -14.44 2.80 -162.15 -0.45 -14.89 16 10 C 0.13 3.07 5.07 -2.38 -0.01 3.06 16 11 C 0.04 0.79 6.98 37.28 0.26 1.05 16 12 O -0.39 -7.16 9.61 -35.23 -0.34 -7.50 16 13 C 0.08 1.43 2.74 -26.88 -0.07 1.35 16 14 H 0.05 0.93 8.11 -51.93 -0.42 0.50 16 15 C -0.12 -1.65 5.83 -26.90 -0.16 -1.81 16 16 C 0.11 1.47 6.08 -4.59 -0.03 1.44 16 17 N -0.60 -10.06 2.94 -174.09 -0.51 -10.58 16 18 C 0.54 9.17 7.46 -10.98 -0.08 9.09 16 19 O -0.54 -11.61 15.77 5.56 0.09 -11.53 16 20 C -0.16 -2.03 4.31 -91.77 -0.40 -2.42 16 21 H 0.13 1.28 4.33 -51.93 -0.22 1.05 16 22 C -0.13 -1.46 6.19 -88.26 -0.55 -2.00 16 23 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 24 C -0.13 -1.49 5.92 -88.32 -0.52 -2.01 16 25 H 0.12 1.66 7.83 -51.93 -0.41 1.25 16 26 C -0.07 -0.63 5.18 -85.35 -0.44 -1.08 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 C -0.12 -0.89 6.21 -24.34 -0.15 -1.04 16 29 C -0.12 -0.88 6.21 -24.34 -0.15 -1.03 16 30 C -0.07 -0.58 5.19 -85.31 -0.44 -1.02 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 C -0.14 -1.04 6.23 -22.47 -0.14 -1.18 16 33 C 0.11 2.24 5.65 -3.72 -0.02 2.22 16 34 C 0.13 2.79 2.96 -67.08 -0.20 2.59 16 35 H 0.07 1.57 7.99 -51.93 -0.42 1.15 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.03 0.77 7.15 -51.93 -0.37 0.40 16 38 H 0.10 2.50 6.16 -51.93 -0.32 2.18 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.82 5.35 -51.93 -0.28 0.55 16 44 H 0.07 1.00 7.95 -51.93 -0.41 0.59 16 45 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.57 5.92 -51.93 -0.31 0.27 16 51 H 0.07 1.51 6.55 -51.93 -0.34 1.17 16 52 H 0.09 2.15 7.00 -51.93 -0.36 1.79 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -31.27 384.12 -11.65 -42.92 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.47 Total: 4.06 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.34 Total: 0.29 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.35 Total: -50.67 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.25 Total: -19.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.27 -11.65 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074415942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.214 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds