Wall clock time and date at job start Sat Apr 11 2020 07:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00157 * 2 1 4 4 H 1.48502 * 109.47128 * 274.98329 * 3 2 1 5 5 H 1.48504 * 109.47241 * 34.97620 * 3 2 1 6 6 H 1.48496 * 109.47125 * 154.98095 * 3 2 1 7 7 C 1.38813 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99400 * 189.09708 * 7 2 1 9 9 N 1.36933 * 120.00184 * 9.10194 * 7 2 1 10 10 C 1.48163 * 127.83698 * 15.59465 * 9 7 2 11 11 C 1.54391 * 104.56985 * 140.36643 * 10 9 7 12 12 H 1.09004 * 111.25955 * 264.09426 * 11 10 9 13 13 C 1.54162 * 105.00458 * 24.01147 * 11 10 9 14 14 H 1.09000 * 111.53608 * 239.51630 * 13 11 10 15 15 C 1.48146 * 127.83606 * 195.57087 * 9 7 2 16 16 C 1.53256 * 109.36663 * 116.43109 * 13 11 10 17 17 H 1.09000 * 110.51837 * 182.52813 * 16 13 11 18 18 C 1.53336 * 108.66604 * 61.10157 * 16 13 11 19 19 C 1.54100 * 108.99700 * 298.79123 * 18 16 13 20 20 C 1.52970 * 109.08251 * 141.63353 * 11 10 9 21 21 H 1.09000 * 109.64517 * 65.51175 * 20 11 10 22 22 C 1.53608 * 109.11290 * 305.41425 * 20 11 10 23 23 N 1.47580 * 106.72398 * 300.23792 * 22 20 11 24 24 C 1.34770 * 122.02421 * 180.09061 * 23 22 20 25 25 O 1.21285 * 119.99907 * 179.97438 * 24 23 22 26 26 C 1.50702 * 120.00119 * 359.97438 * 24 23 22 27 27 C 1.50704 * 109.47081 * 179.97438 * 26 24 23 28 28 C 1.29982 * 118.73943 * 94.73651 * 27 26 24 29 29 C 1.50232 * 122.86812 * 180.14843 * 28 27 26 30 30 O 1.42905 * 110.18436 * 344.87655 * 29 28 27 31 31 C 1.43300 * 113.01707 * 49.97574 * 30 29 28 32 32 C 1.50386 * 118.74548 * 275.00065 * 27 26 24 33 33 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 34 34 H 1.08997 * 110.41281 * 21.59499 * 10 9 7 35 35 H 1.08994 * 110.51374 * 259.18796 * 10 9 7 36 36 H 1.09003 * 110.40252 * 100.73642 * 15 9 7 37 37 H 1.08997 * 110.40273 * 338.30933 * 15 9 7 38 38 H 1.09003 * 109.44802 * 59.38593 * 18 16 13 39 39 H 1.08997 * 109.44649 * 179.29181 * 18 16 13 40 40 H 1.08997 * 109.53163 * 240.76717 * 19 18 16 41 41 H 1.09001 * 109.07568 * 121.18791 * 19 18 16 42 42 H 1.09003 * 109.99883 * 180.93925 * 22 20 11 43 43 H 1.08993 * 110.08545 * 59.59116 * 22 20 11 44 44 H 1.08995 * 109.47236 * 300.00282 * 26 24 23 45 45 H 1.09006 * 109.47006 * 60.00065 * 26 24 23 46 46 H 1.07997 * 118.57066 * 0.38514 * 28 27 26 47 47 H 1.08997 * 109.50245 * 224.55165 * 29 28 27 48 48 H 1.08998 * 109.05881 * 104.91825 * 29 28 27 49 49 H 1.09007 * 109.68207 * 172.07224 * 31 30 29 50 50 H 1.09001 * 109.68619 * 51.52297 * 31 30 29 51 51 H 1.08997 * 109.45058 * 283.41159 * 32 27 26 52 52 H 1.08999 * 109.45170 * 43.33703 * 32 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1484 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5710 -0.7107 11 6 0.0655 -3.8169 -1.6172 12 1 0.2085 -3.5360 -2.6606 13 6 1.2847 -4.5985 -1.0886 14 1 2.0460 -4.7211 -1.8590 15 6 1.8195 -3.7545 0.0889 16 6 0.8234 -5.9584 -0.5532 17 1 1.6651 -6.5092 -0.1336 18 6 0.1842 -6.7471 -1.7024 19 6 -1.0393 -5.9694 -2.2250 20 6 -1.2009 -4.6586 -1.4513 21 1 -2.0611 -4.1044 -1.8269 22 6 -1.4019 -4.9770 0.0379 23 7 -0.2056 -5.7206 0.4783 24 6 -0.0615 -6.1565 1.7454 25 8 0.9372 -6.7648 2.0675 26 6 -1.1411 -5.8882 2.7620 27 6 -0.7380 -6.4761 4.0899 28 6 -0.1453 -5.7114 4.9578 29 6 0.2987 -6.2010 6.3069 30 8 -0.3221 -7.4530 6.6060 31 6 -0.1948 -8.4088 5.5459 32 6 -1.0316 -7.9265 4.3576 33 1 -0.4850 0.8401 -0.0004 34 1 -0.3433 -1.7020 -1.2915 35 1 -0.7335 -2.7500 0.1059 36 1 1.4124 -4.1177 1.0325 37 1 2.9090 -3.7786 0.1096 38 1 0.9143 -6.8810 -2.5007 39 1 -0.1375 -7.7227 -1.3381 40 1 -1.9365 -6.5757 -2.1011 41 1 -0.8964 -5.7497 -3.2830 42 1 -2.2925 -5.5912 0.1709 43 1 -1.4978 -4.0533 0.6085 44 1 -1.2811 -4.8125 2.8680 45 1 -2.0737 -6.3451 2.4308 46 1 0.0325 -4.6780 4.6994 47 1 0.0238 -5.4705 7.0678 48 1 1.3814 -6.3269 6.3013 49 1 -0.5592 -9.3799 5.8815 50 1 0.8508 -8.4912 5.2493 51 1 -2.0905 -8.0462 4.5869 52 1 -0.7828 -8.5161 3.4753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089860912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:53 Heat of formation + Delta-G solvation = -32.816490 kcal Electronic energy + Delta-G solvation = -32753.455094 eV Core-core repulsion = 28718.611195 eV Total energy + Delta-G solvation = -4034.843899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12022 -39.58228 -38.25076 -35.56807 -34.65584 -33.02018 -32.19362 -31.84715 -31.13943 -29.26693 -28.87063 -26.60524 -25.35896 -24.81296 -24.25834 -23.68300 -21.99131 -20.65854 -20.51358 -19.73944 -18.03562 -17.29804 -16.82366 -16.49048 -16.39938 -16.20165 -15.90505 -15.55929 -15.04692 -14.72862 -14.58203 -14.24497 -14.08175 -13.56611 -13.43063 -13.18808 -13.01155 -12.88647 -12.66077 -12.57648 -12.37137 -12.14904 -11.97767 -11.81172 -11.74668 -11.53514 -11.28908 -11.12369 -11.08409 -10.84812 -10.66303 -10.62678 -10.54174 -10.02546 -9.86912 -9.80184 -9.69041 -9.63201 -9.54053 -9.44975 -8.78148 -8.63217 -8.22476 -6.82268 -5.79485 -3.12317 2.08956 2.89504 3.26206 3.37022 3.43199 3.44713 3.80733 4.45688 4.62329 4.66609 4.69427 4.81793 4.89045 4.93622 5.04565 5.15078 5.18824 5.30100 5.31417 5.36831 5.41018 5.41936 5.45604 5.48484 5.52234 5.62396 5.66195 5.67028 5.68058 5.78979 5.81018 5.82841 5.84912 5.96559 5.99258 6.06307 6.12677 6.28977 6.32598 6.40863 6.48525 6.50061 6.61383 6.72603 6.82909 6.87623 7.03143 7.06791 7.36068 7.54462 7.70285 7.74803 8.22359 8.43959 9.12619 9.75201 10.53796 11.34593 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003836 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.262856 B = 7296.881446 C = 9219.220860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.074 0.926 9 N -0.595 5.595 10 C 0.161 3.839 11 C -0.103 4.103 12 H 0.069 0.931 13 C -0.108 4.108 14 H 0.077 0.923 15 C 0.134 3.866 16 C 0.150 3.850 17 H 0.096 0.904 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.088 4.088 21 H 0.086 0.914 22 C 0.110 3.890 23 N -0.597 5.597 24 C 0.525 3.475 25 O -0.545 6.545 26 C -0.106 4.106 27 C -0.090 4.090 28 C -0.190 4.190 29 C 0.094 3.906 30 O -0.383 6.383 31 C 0.061 3.939 32 C -0.113 4.113 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.102 0.898 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 -15.917 2.013 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.035 3.965 11 C -0.123 4.123 12 H 0.088 0.912 13 C -0.129 4.129 14 H 0.095 0.905 15 C 0.008 3.992 16 C 0.047 3.953 17 H 0.114 0.886 18 C -0.163 4.163 19 C -0.148 4.148 20 C -0.107 4.107 21 H 0.104 0.896 22 C -0.012 4.012 23 N -0.330 5.330 24 C 0.313 3.687 25 O -0.423 6.423 26 C -0.146 4.146 27 C -0.090 4.090 28 C -0.208 4.208 29 C 0.017 3.983 30 O -0.302 6.302 31 C -0.016 4.016 32 C -0.150 4.150 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.136 0.864 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.075 0.925 51 H 0.097 0.903 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.425 -16.002 2.421 17.069 hybrid contribution 0.471 1.168 -0.480 1.348 sum -4.954 -14.834 1.941 15.759 Atomic orbital electron populations 1.69893 1.04976 1.25154 1.56348 1.24840 0.95614 0.97763 1.02041 0.86134 0.78805 0.83547 0.77510 1.21620 1.21724 1.20577 1.19022 0.90765 0.82509 1.42776 0.90822 1.44915 1.13511 0.99904 1.73525 1.21708 0.87107 0.93708 0.93988 1.22278 0.92206 0.97225 1.00590 0.91214 1.22543 0.97678 0.93648 0.99019 0.90504 1.21686 0.96710 0.86518 0.94320 1.21295 0.90594 0.96175 0.87264 0.88573 1.22097 0.97925 0.98344 0.97928 1.21684 0.97535 0.95916 0.99622 1.21371 0.99694 0.96023 0.93649 0.89612 1.22150 0.86561 0.96289 0.96209 1.48393 1.20412 1.55245 1.08995 1.20283 0.87745 0.78587 0.82044 1.90661 1.30952 1.41788 1.78915 1.20802 0.98281 1.03158 0.92355 1.20353 0.99559 0.95215 0.93887 1.22732 1.00622 1.00870 0.96592 1.21391 0.96763 0.85486 0.94615 1.88078 1.78305 1.23234 1.40536 1.22615 0.99536 0.92124 0.87342 1.20998 1.00845 0.93755 0.99398 0.93756 0.89958 0.95658 0.95699 0.94241 0.90980 0.92217 0.92373 0.91827 0.92036 0.89688 0.88053 0.88627 0.86424 0.88041 0.91961 0.88781 0.92484 0.90318 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.86 55.49 0.60 -25.58 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.18 10.35 -15.06 -0.16 -6.33 16 8 H 0.07 2.02 7.84 -52.49 -0.41 1.61 16 9 N -0.60 -14.97 3.38 -168.83 -0.57 -15.55 16 10 C 0.16 3.60 5.20 -2.40 -0.01 3.58 16 11 C -0.10 -1.78 3.12 -89.30 -0.28 -2.05 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.87 3.16 -89.13 -0.28 -2.15 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.13 2.89 6.61 -2.39 -0.02 2.87 16 16 C 0.15 2.26 2.90 -67.01 -0.19 2.06 16 17 H 0.10 1.57 7.19 -51.93 -0.37 1.20 16 18 C -0.12 -1.50 5.95 -25.98 -0.15 -1.66 16 19 C -0.11 -1.25 5.68 -26.12 -0.15 -1.40 16 20 C -0.09 -1.19 2.88 -90.29 -0.26 -1.45 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 22 C 0.11 1.49 4.93 -3.14 -0.02 1.47 16 23 N -0.60 -8.92 1.92 -163.68 -0.31 -9.24 16 24 C 0.52 8.30 6.97 -10.99 -0.08 8.22 16 25 O -0.55 -10.21 15.62 5.55 0.09 -10.13 16 26 C -0.11 -1.38 4.70 -29.03 -0.14 -1.51 16 27 C -0.09 -1.18 4.40 -100.93 -0.44 -1.63 16 28 C -0.19 -2.55 9.54 -35.97 -0.34 -2.89 16 29 C 0.09 1.12 7.05 35.78 0.25 1.37 16 30 O -0.38 -4.89 10.85 -35.23 -0.38 -5.27 16 31 C 0.06 0.67 6.89 37.22 0.26 0.93 16 32 C -0.11 -1.28 6.09 -27.97 -0.17 -1.45 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 2.11 6.51 -51.93 -0.34 1.77 16 35 H 0.03 0.59 5.29 -51.93 -0.27 0.31 16 36 H 0.03 0.57 6.29 -51.93 -0.33 0.24 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 43 H 0.09 1.32 5.76 -51.93 -0.30 1.02 16 44 H 0.10 1.34 7.85 -51.93 -0.41 0.93 16 45 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 46 H 0.12 1.63 7.84 -52.49 -0.41 1.21 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 51 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -31.95 388.37 -10.76 -42.71 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.74 Total: 2.60 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.27 Total: -2.27 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.28 Total: -50.37 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.30 Total: -15.40 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.95 -10.76 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089860912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.897 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds