Wall clock time and date at job start Sat Apr 11 2020 07:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00157 * 2 1 4 4 H 1.48502 * 109.47128 * 274.98329 * 3 2 1 5 5 H 1.48504 * 109.47241 * 34.97620 * 3 2 1 6 6 H 1.48496 * 109.47125 * 154.98095 * 3 2 1 7 7 C 1.38813 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99400 * 189.09708 * 7 2 1 9 9 N 1.36933 * 120.00184 * 9.10194 * 7 2 1 10 10 C 1.48163 * 127.83698 * 15.59465 * 9 7 2 11 11 C 1.54391 * 104.56985 * 140.36643 * 10 9 7 12 12 H 1.09004 * 111.25955 * 264.09426 * 11 10 9 13 13 C 1.54162 * 105.00458 * 24.01147 * 11 10 9 14 14 H 1.09000 * 111.53608 * 239.51630 * 13 11 10 15 15 C 1.48146 * 127.83606 * 195.57087 * 9 7 2 16 16 C 1.53256 * 109.36663 * 116.43109 * 13 11 10 17 17 H 1.09000 * 110.51837 * 182.52813 * 16 13 11 18 18 C 1.53336 * 108.66604 * 61.10157 * 16 13 11 19 19 C 1.54100 * 108.99700 * 298.79123 * 18 16 13 20 20 C 1.52970 * 109.08251 * 141.63353 * 11 10 9 21 21 H 1.09000 * 109.64517 * 65.51175 * 20 11 10 22 22 C 1.53608 * 109.11290 * 305.41425 * 20 11 10 23 23 N 1.47580 * 106.72398 * 300.23792 * 22 20 11 24 24 C 1.34770 * 122.02421 * 180.09061 * 23 22 20 25 25 O 1.21285 * 119.99907 * 179.97438 * 24 23 22 26 26 C 1.50702 * 120.00119 * 359.97438 * 24 23 22 27 27 C 1.50704 * 109.47081 * 179.97438 * 26 24 23 28 28 C 1.29982 * 118.73943 * 94.73651 * 27 26 24 29 29 C 1.50232 * 122.86812 * 180.14843 * 28 27 26 30 30 O 1.42905 * 110.18436 * 344.87655 * 29 28 27 31 31 C 1.43300 * 113.01707 * 49.97574 * 30 29 28 32 32 C 1.50386 * 118.74548 * 275.00065 * 27 26 24 33 33 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 34 34 H 1.08997 * 110.41281 * 21.59499 * 10 9 7 35 35 H 1.08994 * 110.51374 * 259.18796 * 10 9 7 36 36 H 1.09003 * 110.40252 * 100.73642 * 15 9 7 37 37 H 1.08997 * 110.40273 * 338.30933 * 15 9 7 38 38 H 1.09003 * 109.44802 * 59.38593 * 18 16 13 39 39 H 1.08997 * 109.44649 * 179.29181 * 18 16 13 40 40 H 1.08997 * 109.53163 * 240.76717 * 19 18 16 41 41 H 1.09001 * 109.07568 * 121.18791 * 19 18 16 42 42 H 1.09003 * 109.99883 * 180.93925 * 22 20 11 43 43 H 1.08993 * 110.08545 * 59.59116 * 22 20 11 44 44 H 1.08995 * 109.47236 * 300.00282 * 26 24 23 45 45 H 1.09006 * 109.47006 * 60.00065 * 26 24 23 46 46 H 1.07997 * 118.57066 * 0.38514 * 28 27 26 47 47 H 1.08997 * 109.50245 * 224.55165 * 29 28 27 48 48 H 1.08998 * 109.05881 * 104.91825 * 29 28 27 49 49 H 1.09007 * 109.68207 * 172.07224 * 31 30 29 50 50 H 1.09001 * 109.68619 * 51.52297 * 31 30 29 51 51 H 1.08997 * 109.45058 * 283.41159 * 32 27 26 52 52 H 1.08999 * 109.45170 * 43.33703 * 32 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1484 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5710 -0.7107 11 6 0.0655 -3.8169 -1.6172 12 1 0.2085 -3.5360 -2.6606 13 6 1.2847 -4.5985 -1.0886 14 1 2.0460 -4.7211 -1.8590 15 6 1.8195 -3.7545 0.0889 16 6 0.8234 -5.9584 -0.5532 17 1 1.6651 -6.5092 -0.1336 18 6 0.1842 -6.7471 -1.7024 19 6 -1.0393 -5.9694 -2.2250 20 6 -1.2009 -4.6586 -1.4513 21 1 -2.0611 -4.1044 -1.8269 22 6 -1.4019 -4.9770 0.0379 23 7 -0.2056 -5.7206 0.4783 24 6 -0.0615 -6.1565 1.7454 25 8 0.9372 -6.7648 2.0675 26 6 -1.1411 -5.8882 2.7620 27 6 -0.7380 -6.4761 4.0899 28 6 -0.1453 -5.7114 4.9578 29 6 0.2987 -6.2010 6.3069 30 8 -0.3221 -7.4530 6.6060 31 6 -0.1948 -8.4088 5.5459 32 6 -1.0316 -7.9265 4.3576 33 1 -0.4850 0.8401 -0.0004 34 1 -0.3433 -1.7020 -1.2915 35 1 -0.7335 -2.7500 0.1059 36 1 1.4124 -4.1177 1.0325 37 1 2.9090 -3.7786 0.1096 38 1 0.9143 -6.8810 -2.5007 39 1 -0.1375 -7.7227 -1.3381 40 1 -1.9365 -6.5757 -2.1011 41 1 -0.8964 -5.7497 -3.2830 42 1 -2.2925 -5.5912 0.1709 43 1 -1.4978 -4.0533 0.6085 44 1 -1.2811 -4.8125 2.8680 45 1 -2.0737 -6.3451 2.4308 46 1 0.0325 -4.6780 4.6994 47 1 0.0238 -5.4705 7.0678 48 1 1.3814 -6.3269 6.3013 49 1 -0.5592 -9.3799 5.8815 50 1 0.8508 -8.4912 5.2493 51 1 -2.0905 -8.0462 4.5869 52 1 -0.7828 -8.5161 3.4753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089860912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:52 Heat of formation + Delta-G solvation = -50.791395 kcal Electronic energy + Delta-G solvation = -32754.234545 eV Core-core repulsion = 28718.611195 eV Total energy + Delta-G solvation = -4035.623349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38381 -40.60814 -39.47899 -37.22363 -35.69585 -34.38745 -33.87499 -33.14552 -32.05078 -30.83605 -30.05505 -28.16952 -26.95536 -26.22648 -25.26047 -24.62481 -23.28486 -22.30027 -21.89206 -21.01873 -19.04106 -18.93139 -18.31460 -17.64127 -17.45125 -17.39288 -17.08886 -16.86898 -16.55605 -16.00424 -15.87949 -15.57601 -15.30521 -14.97418 -14.84043 -14.47741 -14.20601 -14.05548 -13.90549 -13.68830 -13.60741 -13.39259 -13.33470 -13.00613 -12.93786 -12.87384 -12.79207 -12.64320 -12.54572 -12.26089 -12.20932 -11.89206 -11.81082 -11.78802 -11.53190 -11.22985 -11.06518 -10.94920 -10.77111 -10.64310 -10.60318 -9.81207 -9.43985 -8.86296 -7.92389 -5.27142 1.04557 1.43146 1.43696 1.53050 1.66783 2.12142 2.45719 2.90835 3.25810 3.51524 3.57665 3.65174 3.71337 3.77003 3.85654 3.90309 4.01972 4.12220 4.17930 4.26974 4.29588 4.32687 4.37151 4.40897 4.43650 4.48610 4.51957 4.55601 4.60114 4.67321 4.70312 4.76030 4.79155 4.81096 4.85484 4.93850 4.99522 5.04202 5.10124 5.18235 5.20944 5.30251 5.37921 5.40688 5.47375 5.48307 5.62959 5.67838 5.77600 5.84398 6.12651 6.19900 6.54038 7.03151 7.21859 7.68396 8.48421 9.20120 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003836 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.262856 B = 7296.881446 C = 9219.220860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.054 4.054 3 Si 0.974 3.026 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.067 0.933 9 N -0.620 5.620 10 C 0.167 3.833 11 C -0.091 4.091 12 H 0.072 0.928 13 C -0.098 4.098 14 H 0.086 0.914 15 C 0.135 3.865 16 C 0.151 3.849 17 H 0.080 0.920 18 C -0.116 4.116 19 C -0.101 4.101 20 C -0.084 4.084 21 H 0.100 0.900 22 C 0.109 3.891 23 N -0.597 5.597 24 C 0.519 3.481 25 O -0.581 6.581 26 C -0.101 4.101 27 C -0.097 4.097 28 C -0.208 4.208 29 C 0.094 3.906 30 O -0.393 6.393 31 C 0.056 3.944 32 C -0.110 4.110 33 H 0.250 0.750 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.009 0.991 37 H 0.026 0.974 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.128 0.872 46 H 0.103 0.897 47 H 0.117 0.883 48 H 0.061 0.939 49 H 0.121 0.879 50 H 0.045 0.955 51 H 0.098 0.902 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 -17.866 0.885 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.248 4.248 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.085 0.915 9 N -0.344 5.344 10 C 0.042 3.958 11 C -0.111 4.111 12 H 0.090 0.910 13 C -0.118 4.118 14 H 0.104 0.896 15 C 0.009 3.991 16 C 0.048 3.952 17 H 0.098 0.902 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.102 4.102 21 H 0.118 0.882 22 C -0.012 4.012 23 N -0.330 5.330 24 C 0.309 3.691 25 O -0.462 6.462 26 C -0.141 4.141 27 C -0.097 4.097 28 C -0.226 4.226 29 C 0.018 3.982 30 O -0.312 6.312 31 C -0.020 4.020 32 C -0.146 4.146 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.146 0.854 46 H 0.121 0.879 47 H 0.135 0.865 48 H 0.079 0.921 49 H 0.139 0.861 50 H 0.064 0.936 51 H 0.116 0.884 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.950 -17.968 1.273 19.307 hybrid contribution 0.999 1.825 -0.084 2.082 sum -5.951 -16.143 1.189 17.246 Atomic orbital electron populations 1.70066 1.06112 1.25544 1.57007 1.25589 0.96509 1.00666 1.02064 0.85144 0.77760 0.79445 0.77473 1.21073 1.21751 1.19901 1.19295 0.90947 0.84085 1.42954 0.91476 1.45213 1.14637 1.00458 1.74067 1.21606 0.85595 0.94661 0.93979 1.22125 0.94414 0.95392 0.99188 0.90967 1.22449 0.97827 0.94251 0.97287 0.89602 1.21740 0.95956 0.85796 0.95652 1.21259 0.90782 0.94765 0.88438 0.90226 1.22067 0.98422 0.98249 0.96703 1.21655 0.98200 0.94331 0.99695 1.21382 0.97800 0.96941 0.94113 0.88181 1.22249 0.87347 0.95825 0.95795 1.48499 1.20764 1.54813 1.08886 1.20755 0.87833 0.78009 0.82551 1.90639 1.32437 1.43601 1.79511 1.20812 0.98687 1.02881 0.91681 1.20649 0.99038 0.96387 0.93657 1.22845 1.01445 1.00491 0.97832 1.21439 0.96681 0.85802 0.94299 1.88061 1.78368 1.23491 1.41254 1.22780 0.99121 0.92951 0.87143 1.21029 1.01969 0.92164 0.99484 0.94113 0.93650 0.96652 0.97307 0.95530 0.89591 0.91000 0.89696 0.90515 0.88030 0.92331 0.88915 0.85413 0.87920 0.86498 0.92060 0.86060 0.93617 0.88398 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.33 10.86 21.65 0.24 -55.09 16 2 C -0.05 -3.07 5.40 84.86 0.46 -2.61 16 3 Si 0.97 45.94 29.56 68.60 2.03 47.97 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.24 -14.05 10.35 84.03 0.87 -13.18 16 8 H 0.07 3.83 7.84 -2.91 -0.02 3.81 16 9 N -0.62 -32.44 3.38 -688.04 -2.33 -34.76 16 10 C 0.17 7.69 5.20 86.53 0.45 8.14 16 11 C -0.09 -3.08 3.12 -9.94 -0.03 -3.11 16 12 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 13 C -0.10 -3.33 3.16 -9.83 -0.03 -3.36 16 14 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 15 C 0.13 6.01 6.61 86.55 0.57 6.58 16 16 C 0.15 4.34 2.90 44.97 0.13 4.47 16 17 H 0.08 2.58 7.19 -2.39 -0.02 2.56 16 18 C -0.12 -2.37 5.95 31.08 0.18 -2.18 16 19 C -0.10 -1.83 5.68 30.99 0.18 -1.65 16 20 C -0.08 -2.03 2.88 -10.58 -0.03 -2.06 16 21 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 22 C 0.11 2.73 4.93 86.38 0.43 3.16 16 23 N -0.60 -17.15 1.92 -790.15 -1.52 -18.67 16 24 C 0.52 16.20 6.97 87.66 0.61 16.81 16 25 O -0.58 -22.03 15.62 -3.05 -0.05 -22.08 16 26 C -0.10 -2.54 4.70 29.10 0.14 -2.41 16 27 C -0.10 -2.51 4.40 -15.53 -0.07 -2.58 16 28 C -0.21 -5.71 9.54 26.55 0.25 -5.46 16 29 C 0.09 2.25 7.05 71.09 0.50 2.75 16 30 O -0.39 -9.67 10.85 -148.98 -1.62 -11.28 16 31 C 0.06 1.18 6.89 72.03 0.50 1.67 16 32 C -0.11 -2.29 6.09 29.79 0.18 -2.11 16 33 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 34 H 0.05 2.41 6.51 -2.39 -0.02 2.40 16 35 H 0.02 0.75 5.29 -2.39 -0.01 0.74 16 36 H 0.01 0.43 6.29 -2.39 -0.02 0.42 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.78 8.11 -2.39 -0.02 1.76 16 43 H 0.06 1.80 5.76 -2.39 -0.01 1.79 16 44 H 0.09 2.49 7.85 -2.39 -0.02 2.48 16 45 H 0.13 2.32 8.10 -2.38 -0.02 2.31 16 46 H 0.10 3.04 7.84 -2.91 -0.02 3.02 16 47 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 50 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 51 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -72.61 388.37 2.94 -69.67 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.90 Total: 21.38 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.29 Total: 2.88 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -3.61 Total: -108.53 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.66 Total: -33.36 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.61 2.94 -69.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089860912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.878 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds