Wall clock time and date at job start Sat Apr 11 2020 07:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47346 * 274.97278 * 3 2 1 5 5 H 1.48508 * 109.46906 * 34.97674 * 3 2 1 6 6 H 1.48501 * 109.46929 * 154.97169 * 3 2 1 7 7 C 1.38813 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99878 * 185.97779 * 7 2 1 9 9 N 1.36939 * 119.99961 * 5.98720 * 7 2 1 10 10 C 1.49853 * 125.81181 * 172.67373 * 9 7 2 11 11 C 1.48413 * 102.14659 * 202.33764 * 10 9 7 12 12 H 1.08999 * 103.31528 * 61.94277 * 11 10 9 13 13 C 1.55972 * 102.74088 * 317.66340 * 11 10 9 14 14 H 1.09007 * 111.39953 * 288.50250 * 13 11 10 15 15 C 1.48931 * 125.81386 * 352.66359 * 9 7 2 16 16 C 1.52300 * 103.00482 * 169.48011 * 13 11 10 17 17 H 1.08993 * 113.91212 * 207.16502 * 16 13 11 18 18 C 1.55534 * 103.63875 * 83.49382 * 16 13 11 19 19 C 1.54057 * 107.22723 * 320.38423 * 18 16 13 20 20 C 1.48731 * 132.92785 * 186.14629 * 11 10 9 21 21 H 1.08995 * 113.80783 * 336.64132 * 20 11 10 22 22 C 1.56707 * 103.02427 * 213.59982 * 20 11 10 23 23 N 1.48551 * 108.51777 * 334.18902 * 16 13 11 24 24 C 1.34784 * 122.40516 * 253.18989 * 23 16 13 25 25 O 1.21279 * 119.99827 * 0.02562 * 24 23 16 26 26 C 1.50695 * 119.99848 * 180.02562 * 24 23 16 27 27 C 1.50703 * 109.46768 * 180.02562 * 26 24 23 28 28 C 1.29982 * 118.74305 * 95.00332 * 27 26 24 29 29 C 1.50229 * 122.86607 * 180.38952 * 28 27 26 30 30 O 1.42902 * 110.13465 * 344.39378 * 29 28 27 31 31 C 1.43301 * 113.02032 * 50.18331 * 30 29 28 32 32 C 1.50385 * 118.74264 * 274.72762 * 27 26 24 33 33 H 0.96997 * 120.00064 * 359.97438 * 1 2 3 34 34 H 1.09002 * 110.87172 * 84.18149 * 10 9 7 35 35 H 1.09002 * 110.87222 * 320.49803 * 10 9 7 36 36 H 1.09004 * 110.22217 * 67.95431 * 15 9 7 37 37 H 1.09000 * 110.22862 * 306.02091 * 15 9 7 38 38 H 1.08999 * 109.90510 * 200.95160 * 18 16 13 39 39 H 1.09000 * 109.90305 * 79.81190 * 18 16 13 40 40 H 1.08998 * 109.52833 * 87.86497 * 19 18 16 41 41 H 1.08998 * 109.52228 * 208.07054 * 19 18 16 42 42 H 1.09000 * 110.56450 * 204.12275 * 22 20 11 43 43 H 1.08992 * 110.56939 * 81.21230 * 22 20 11 44 44 H 1.09003 * 109.47249 * 299.99776 * 26 24 23 45 45 H 1.08997 * 109.47335 * 59.99860 * 26 24 23 46 46 H 1.08004 * 118.57148 * 0.35983 * 28 27 26 47 47 H 1.09006 * 109.36645 * 104.59781 * 29 28 27 48 48 H 1.09009 * 109.36045 * 224.19186 * 29 28 27 49 49 H 1.09000 * 109.68109 * 51.51892 * 31 30 29 50 50 H 1.08993 * 109.68619 * 172.07826 * 31 30 29 51 51 H 1.09005 * 109.45052 * 283.43427 * 32 27 26 52 52 H 1.08998 * 109.44834 * 43.36104 * 32 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3926 2.1071 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5963 1.4121 0.5923 7 6 2.0102 -1.2022 -0.0005 8 1 3.0858 -1.2047 0.0969 9 7 1.3311 -2.3848 -0.1248 10 6 1.9512 -3.7382 -0.2958 11 6 0.8477 -4.5109 -0.9187 12 1 0.6760 -3.9890 -1.8601 13 6 -0.3990 -4.0480 -0.1037 14 1 -0.3841 -4.4508 0.9091 15 6 -0.1495 -2.5449 -0.1127 16 6 -1.5624 -4.6218 -0.9016 17 1 -2.4901 -4.0593 -0.7968 18 6 -1.6685 -6.0877 -0.3927 19 6 -0.2316 -6.6133 -0.2127 20 6 0.6880 -5.9481 -1.2666 21 1 1.6322 -6.4756 -1.4019 22 6 -0.1868 -5.9018 -2.5659 23 7 -1.1324 -4.7813 -2.3145 24 6 -1.5674 -3.9689 -3.2980 25 8 -2.3380 -3.0676 -3.0437 26 6 -1.0961 -4.1804 -4.7137 27 6 -1.7246 -3.1464 -5.6120 28 6 -1.0607 -2.0602 -5.8748 29 6 -1.6015 -0.9660 -6.7508 30 8 -2.7187 -1.4445 -7.5024 31 6 -3.6991 -2.1034 -6.6912 32 6 -3.0932 -3.4135 -6.1752 33 1 -0.4850 0.8400 0.0004 34 1 2.2267 -4.1639 0.6691 35 1 2.8139 -3.6890 -0.9603 36 1 -0.5844 -2.0962 -1.0058 37 1 -0.5708 -2.0877 0.7827 38 1 -2.1976 -6.6974 -1.1251 39 1 -2.1948 -6.1121 0.5615 40 1 0.1236 -6.3673 0.7880 41 1 -0.2195 -7.6946 -0.3491 42 1 -0.7289 -6.8384 -2.6961 43 1 0.4329 -5.6917 -3.4376 44 1 -0.0110 -4.0845 -4.7536 45 1 -1.3853 -5.1767 -5.0479 46 1 -0.0777 -1.9387 -5.4443 47 1 -1.9165 -0.1278 -6.1292 48 1 -0.8215 -0.6325 -7.4354 49 1 -3.9700 -1.4641 -5.8509 50 1 -4.5845 -2.3201 -7.2887 51 1 -3.0154 -4.1286 -6.9942 52 1 -3.7330 -3.8246 -5.3944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089860913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:55 Heat of formation + Delta-G solvation = -14.134457 kcal Electronic energy + Delta-G solvation = -32965.413135 eV Core-core repulsion = 28931.379350 eV Total energy + Delta-G solvation = -4034.033785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.85326 -40.66537 -39.51882 -37.59773 -35.71096 -34.45119 -33.63060 -32.76161 -32.08086 -30.78872 -30.07494 -28.52756 -26.94053 -26.03180 -25.21124 -24.62473 -23.45209 -22.20263 -21.58091 -21.03153 -19.06931 -18.89392 -18.43592 -18.11251 -17.52688 -17.39647 -17.10528 -16.88449 -16.47001 -16.04571 -15.84121 -15.59939 -15.11819 -15.02057 -14.74529 -14.40505 -14.16204 -14.04242 -13.94725 -13.89687 -13.57865 -13.39119 -13.32037 -13.01411 -12.97620 -12.91000 -12.69686 -12.59212 -12.37260 -12.26622 -12.12197 -11.97363 -11.91599 -11.82874 -11.57176 -11.33775 -11.08523 -10.82219 -10.72166 -10.68410 -10.57171 -9.83143 -9.47155 -8.95249 -7.89546 -5.25625 1.02072 1.36753 1.39988 1.49076 1.71456 2.09156 2.42472 2.85655 3.27042 3.38006 3.45213 3.50867 3.60168 3.69964 3.81227 3.86992 3.98257 4.04736 4.22255 4.23727 4.26491 4.32914 4.36072 4.40400 4.41547 4.46466 4.52884 4.54468 4.62782 4.66740 4.69893 4.75605 4.82000 4.83289 4.88504 4.91731 4.95646 5.00031 5.09451 5.10191 5.27369 5.33082 5.38964 5.45584 5.46888 5.58677 5.62522 5.71629 5.75719 5.81150 6.07149 6.09571 6.56244 6.99621 7.28000 7.68360 8.37503 9.20748 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007860 B = 0.004940 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3561.657184 B = 5666.878293 C = 8348.472787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.635 5.635 10 C 0.153 3.847 11 C -0.105 4.105 12 H 0.035 0.965 13 C -0.125 4.125 14 H 0.086 0.914 15 C 0.209 3.791 16 C 0.153 3.847 17 H 0.069 0.931 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.063 4.063 21 H 0.130 0.870 22 C 0.106 3.894 23 N -0.610 5.610 24 C 0.507 3.493 25 O -0.587 6.587 26 C -0.095 4.095 27 C -0.098 4.098 28 C -0.210 4.210 29 C 0.093 3.907 30 O -0.389 6.389 31 C 0.054 3.946 32 C -0.108 4.108 33 H 0.242 0.758 34 H 0.030 0.970 35 H 0.047 0.953 36 H -0.013 1.013 37 H -0.002 1.002 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.136 0.864 46 H 0.103 0.897 47 H 0.050 0.950 48 H 0.121 0.879 49 H 0.036 0.964 50 H 0.124 0.876 51 H 0.106 0.894 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 -20.238 -10.908 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.264 4.264 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.363 5.363 10 C 0.030 3.970 11 C -0.124 4.124 12 H 0.054 0.946 13 C -0.145 4.145 14 H 0.104 0.896 15 C 0.084 3.916 16 C 0.050 3.950 17 H 0.088 0.912 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.082 4.082 21 H 0.148 0.852 22 C -0.015 4.015 23 N -0.344 5.344 24 C 0.297 3.703 25 O -0.468 6.468 26 C -0.134 4.134 27 C -0.099 4.099 28 C -0.228 4.228 29 C 0.016 3.984 30 O -0.308 6.308 31 C -0.022 4.022 32 C -0.145 4.145 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.006 0.994 37 H 0.016 0.984 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.154 0.846 46 H 0.121 0.879 47 H 0.068 0.932 48 H 0.139 0.861 49 H 0.054 0.946 50 H 0.142 0.858 51 H 0.124 0.876 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.226 -19.518 -10.994 22.632 hybrid contribution 0.276 2.300 0.906 2.488 sum -2.950 -17.217 -10.088 20.172 Atomic orbital electron populations 1.70268 1.06627 1.24910 1.58165 1.25743 0.96465 1.01268 1.02902 0.85093 0.78111 0.79224 0.77191 1.21705 1.22263 1.18429 1.19486 0.91486 0.83890 1.42073 0.89735 1.45963 1.01803 1.02306 1.86218 1.20430 0.94692 0.84515 0.97411 1.20901 0.94395 0.97500 0.99647 0.94645 1.22777 0.97122 0.95228 0.99388 0.89609 1.20392 0.83602 0.91590 0.95994 1.21696 0.95298 0.98109 0.79940 0.91240 1.22641 0.98640 0.92017 1.02115 1.22179 0.92666 1.01121 0.98689 1.21542 0.99875 0.91760 0.95022 0.85182 1.23421 0.90406 0.89340 0.98285 1.49374 1.46469 1.31651 1.06879 1.21098 0.80496 0.80628 0.88122 1.90714 1.38115 1.33357 1.84569 1.20829 1.01954 1.01606 0.89049 1.20708 0.96558 0.95908 0.96686 1.22806 1.01386 0.96681 1.01925 1.21414 0.88916 0.93587 0.94436 1.88044 1.31940 1.76219 1.34628 1.22823 0.91874 0.92417 0.95133 1.21053 0.93119 0.99145 1.01195 0.94898 0.95174 0.93522 0.99430 0.98391 0.89240 0.90176 0.92189 0.87830 0.86773 0.88744 0.87797 0.84565 0.87914 0.93244 0.86144 0.94566 0.85785 0.87572 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.06 10.43 21.65 0.23 -62.83 16 2 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 3 Si 0.98 48.88 29.56 68.60 2.03 50.91 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.24 -14.32 10.30 84.03 0.87 -13.45 16 8 H 0.08 4.75 7.84 -2.91 -0.02 4.73 16 9 N -0.64 -34.81 3.47 -696.29 -2.42 -37.23 16 10 C 0.15 6.25 7.14 84.28 0.60 6.85 16 11 C -0.10 -3.43 2.49 -12.57 -0.03 -3.46 16 12 H 0.04 1.39 5.35 -2.39 -0.01 1.37 16 13 C -0.13 -4.80 2.55 -10.21 -0.03 -4.83 16 14 H 0.09 3.11 6.75 -2.38 -0.02 3.10 16 15 C 0.21 11.43 4.88 85.70 0.42 11.85 16 16 C 0.15 4.92 3.92 45.24 0.18 5.10 16 17 H 0.07 2.72 7.64 -2.39 -0.02 2.70 16 18 C -0.12 -2.30 5.44 31.82 0.17 -2.13 16 19 C -0.11 -1.76 5.31 31.60 0.17 -1.59 16 20 C -0.06 -1.19 4.25 -10.21 -0.04 -1.23 16 21 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 22 C 0.11 1.79 5.38 87.24 0.47 2.26 16 23 N -0.61 -17.28 1.74 -776.36 -1.35 -18.63 16 24 C 0.51 17.14 7.61 87.65 0.67 17.80 16 25 O -0.59 -26.84 15.88 -3.02 -0.05 -26.89 16 26 C -0.10 -2.30 4.44 29.10 0.13 -2.18 16 27 C -0.10 -2.73 4.40 -15.53 -0.07 -2.80 16 28 C -0.21 -6.42 9.54 26.55 0.25 -6.17 16 29 C 0.09 2.61 7.04 71.09 0.50 3.11 16 30 O -0.39 -10.82 10.84 -148.98 -1.61 -12.44 16 31 C 0.05 1.32 6.90 72.08 0.50 1.82 16 32 C -0.11 -2.51 6.10 29.85 0.18 -2.33 16 33 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H -0.01 -0.82 7.65 -2.38 -0.02 -0.83 16 37 H 0.00 -0.14 7.35 -2.39 -0.02 -0.16 16 38 H 0.09 1.40 7.49 -2.39 -0.02 1.38 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.13 7.18 -2.39 -0.02 1.12 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.11 7.37 -2.39 -0.02 1.09 16 43 H 0.09 1.34 6.78 -2.39 -0.02 1.33 16 44 H 0.10 2.36 7.32 -2.39 -0.02 2.35 16 45 H 0.14 2.11 8.13 -2.39 -0.02 2.09 16 46 H 0.10 3.33 7.83 -2.91 -0.02 3.30 16 47 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 49 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 50 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 52 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -87.80 388.94 3.12 -84.68 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.90 Total: 17.69 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.40 Total: 4.74 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.54 Total: -118.69 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.66 Total: -39.32 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -87.80 3.12 -84.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089860913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.545 kcal (2) G-P(sol) polarization free energy of solvation -87.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds