Wall clock time and date at job start Sat Apr 11 2020 07:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48503 * 109.47202 * 265.38998 * 3 2 1 5 5 H 1.48500 * 109.47196 * 25.39147 * 3 2 1 6 6 H 1.48503 * 109.46921 * 145.39321 * 3 2 1 7 7 C 1.38808 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00397 * 343.38487 * 7 2 1 9 9 N 1.36942 * 120.00203 * 163.39473 * 7 2 1 10 10 C 1.48164 * 127.83906 * 160.92056 * 9 7 2 11 11 C 1.54375 * 104.55582 * 140.34066 * 10 9 7 12 12 H 1.09000 * 110.93977 * 263.56702 * 11 10 9 13 13 C 1.53689 * 104.88782 * 24.09031 * 11 10 9 14 14 H 1.09003 * 110.62341 * 239.47547 * 13 11 10 15 15 C 1.48145 * 127.83253 * 340.90090 * 9 7 2 16 16 C 1.53029 * 109.84252 * 116.83614 * 13 11 10 17 17 H 1.09000 * 110.13255 * 179.87263 * 16 13 11 18 18 C 1.53043 * 109.19681 * 300.30685 * 16 13 11 19 19 C 1.52934 * 110.00692 * 59.23626 * 18 16 13 20 20 C 1.53237 * 108.96958 * 141.22686 * 11 10 9 21 21 H 1.08999 * 110.94124 * 67.64838 * 20 11 10 22 22 N 1.47686 * 108.04683 * 188.92170 * 20 11 10 23 23 C 1.34778 * 122.07604 * 238.66483 * 22 20 11 24 24 O 1.21287 * 119.99745 * 359.70728 * 23 22 20 25 25 C 1.50696 * 120.00270 * 179.71616 * 23 22 20 26 26 C 1.50695 * 109.47246 * 179.97438 * 25 23 22 27 27 C 1.29981 * 118.74843 * 95.01503 * 26 25 23 28 28 C 1.50234 * 122.87214 * 180.43258 * 27 26 25 29 29 O 1.42911 * 110.13008 * 344.37696 * 28 27 26 30 30 C 1.43223 * 113.02224 * 50.17007 * 29 28 27 31 31 C 1.50391 * 118.74224 * 274.99449 * 26 25 23 32 32 C 1.47644 * 115.85027 * 58.38929 * 22 20 11 33 33 H 0.97003 * 119.99768 * 359.97438 * 1 2 3 34 34 H 1.08999 * 110.41147 * 21.57135 * 10 9 7 35 35 H 1.08995 * 110.51896 * 259.16089 * 10 9 7 36 36 H 1.08993 * 110.40463 * 338.26903 * 15 9 7 37 37 H 1.08995 * 110.40338 * 100.57160 * 15 9 7 38 38 H 1.09006 * 109.38106 * 179.39915 * 18 16 13 39 39 H 1.08997 * 109.38445 * 299.06843 * 18 16 13 40 40 H 1.08999 * 109.45549 * 120.90085 * 19 18 16 41 41 H 1.09004 * 109.45089 * 240.83271 * 19 18 16 42 42 H 1.08995 * 109.47252 * 59.99358 * 25 23 22 43 43 H 1.09009 * 109.46918 * 299.99217 * 25 23 22 44 44 H 1.07999 * 118.56357 * 0.41645 * 27 26 25 45 45 H 1.08997 * 109.35833 * 104.57998 * 28 27 26 46 46 H 1.09002 * 109.36155 * 224.17731 * 28 27 26 47 47 H 1.08992 * 109.65745 * 172.07950 * 30 29 28 48 48 H 1.09004 * 109.66811 * 51.54416 * 30 29 28 49 49 H 1.08999 * 109.44865 * 283.41051 * 31 26 25 50 50 H 1.08999 * 109.44770 * 43.36366 * 31 26 25 51 51 H 1.09000 * 109.99220 * 119.93148 * 32 22 20 52 52 H 1.09002 * 109.99096 * 241.30494 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9902 -1.3956 5 1 1.4024 2.6789 0.6003 6 1 3.4957 1.4702 0.7952 7 6 2.0102 -1.2021 -0.0005 8 1 1.5040 -2.1180 0.2665 9 7 3.3367 -1.2268 -0.3395 10 6 4.3318 -2.2831 -0.0403 11 6 5.1858 -2.3858 -1.3222 12 1 4.8313 -3.1934 -1.9628 13 6 5.0375 -1.0176 -2.0062 14 1 4.6112 -1.1309 -3.0030 15 6 4.1023 -0.2036 -1.0888 16 6 6.3978 -0.3199 -2.0728 17 1 6.2984 0.6504 -2.5593 18 6 6.9362 -0.1304 -0.6528 19 6 7.0785 -1.4872 0.0383 20 6 6.6506 -2.6040 -0.9287 21 1 6.7890 -3.5829 -0.4696 22 7 7.4749 -2.4834 -2.1482 23 6 8.2643 -3.4865 -2.5806 24 8 8.3173 -4.5272 -1.9598 25 6 9.0813 -3.3152 -3.8352 26 6 9.8703 -4.5722 -4.0965 27 6 9.3765 -5.4640 -4.9030 28 6 10.0789 -6.7532 -5.2216 29 8 11.4502 -6.6768 -4.8267 30 6 11.6208 -6.2174 -3.4810 31 6 11.1993 -4.7467 -3.4146 32 6 7.3756 -1.1980 -2.8677 33 1 -0.4850 0.8401 0.0004 34 1 3.8317 -3.2306 0.1605 35 1 4.9523 -1.9943 0.8079 36 1 3.4294 0.4162 -1.6812 37 1 4.6823 0.4144 -0.4034 38 1 7.9103 0.3569 -0.6972 39 1 6.2468 0.4943 -0.0849 40 1 8.1172 -1.6374 0.3329 41 1 6.4432 -1.5121 0.9236 42 1 9.7658 -2.4761 -3.7113 43 1 8.4171 -3.1210 -4.6776 44 1 8.4193 -5.2697 -5.3640 45 1 9.5940 -7.5704 -4.6876 46 1 10.0215 -6.9405 -6.2939 47 1 12.6671 -6.3128 -3.1908 48 1 10.9977 -6.8085 -2.8097 49 1 11.9474 -4.1318 -3.9148 50 1 11.1152 -4.4399 -2.3720 51 1 8.3540 -0.7197 -2.9129 52 1 6.9935 -1.3634 -3.8751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089860914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:59 Heat of formation + Delta-G solvation = -23.652439 kcal Electronic energy + Delta-G solvation = -32117.799040 eV Core-core repulsion = 28083.352524 eV Total energy + Delta-G solvation = -4034.446516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37645 -39.87671 -38.69107 -35.98334 -34.91503 -33.16551 -32.35514 -31.80465 -31.35749 -29.89871 -29.25731 -27.56859 -25.78004 -24.56699 -24.15972 -23.80783 -22.06200 -21.53649 -20.84188 -19.70005 -18.28586 -17.49864 -17.05189 -16.82556 -16.71375 -16.37171 -16.12665 -15.95546 -15.41840 -15.13708 -14.93395 -14.52696 -13.90633 -13.81567 -13.55248 -13.43011 -13.13826 -13.05625 -12.90979 -12.87146 -12.73105 -12.59672 -12.32629 -12.20354 -11.99144 -11.66937 -11.54614 -11.50360 -11.41311 -11.12109 -10.84190 -10.65206 -10.43936 -10.25658 -10.09565 -9.95640 -9.88699 -9.82516 -9.63316 -9.38460 -9.04855 -8.82538 -8.52235 -7.10989 -5.95220 -3.28730 1.80914 2.58906 2.96718 3.26666 3.40501 3.44326 3.60824 4.34752 4.40557 4.45064 4.49540 4.61156 4.63025 4.70963 4.82486 4.90165 4.94663 5.05541 5.06473 5.11156 5.17777 5.23929 5.24689 5.27500 5.29472 5.34874 5.37698 5.42473 5.47392 5.53898 5.55570 5.59926 5.65524 5.70140 5.75808 5.85222 5.96417 6.08788 6.12765 6.19437 6.20741 6.27955 6.35015 6.46894 6.52397 6.56323 6.69756 6.77530 6.81356 6.85231 7.44534 7.59481 8.14150 8.29742 8.76323 9.63954 10.19028 11.21401 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.002549 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.464185 B =10983.055409 C =11279.530332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.889 3.111 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.233 4.233 8 H 0.094 0.906 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.104 4.104 12 H 0.076 0.924 13 C -0.090 4.090 14 H 0.075 0.925 15 C 0.101 3.899 16 C -0.093 4.093 17 H 0.086 0.914 18 C -0.117 4.117 19 C -0.131 4.131 20 C 0.152 3.848 21 H 0.101 0.899 22 N -0.607 5.607 23 C 0.520 3.480 24 O -0.540 6.540 25 C -0.106 4.106 26 C -0.088 4.088 27 C -0.191 4.191 28 C 0.093 3.907 29 O -0.382 6.382 30 C 0.060 3.940 31 C -0.115 4.115 32 C 0.117 3.883 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.068 0.932 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.458 -5.171 -9.117 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.720 3.280 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.360 4.360 8 H 0.111 0.889 9 N -0.330 5.330 10 C 0.004 3.996 11 C -0.125 4.125 12 H 0.094 0.906 13 C -0.110 4.110 14 H 0.093 0.907 15 C -0.024 4.024 16 C -0.112 4.112 17 H 0.105 0.895 18 C -0.155 4.155 19 C -0.169 4.169 20 C 0.049 3.951 21 H 0.119 0.881 22 N -0.341 5.341 23 C 0.308 3.692 24 O -0.418 6.418 25 C -0.145 4.145 26 C -0.089 4.089 27 C -0.209 4.209 28 C 0.016 3.984 29 O -0.301 6.301 30 C -0.017 4.017 31 C -0.152 4.152 32 C -0.006 4.006 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.133 0.867 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.102 0.898 51 H 0.086 0.914 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.346 -5.693 -8.845 25.606 hybrid contribution -0.051 1.346 0.048 1.348 sum 23.294 -4.346 -8.797 25.276 Atomic orbital electron populations 1.69773 1.05425 1.26482 1.54328 1.25012 0.95269 0.97445 1.00400 0.86879 0.79251 0.84529 0.77298 1.21497 1.23196 1.19743 1.18684 0.81091 0.94987 1.41212 0.88860 1.45267 1.05837 1.19476 1.62463 1.21883 0.90747 0.93512 0.93471 1.22374 0.93469 0.97382 0.99254 0.90573 1.21955 0.93972 0.95179 0.99864 0.90688 1.22361 0.93511 0.92973 0.93558 1.21443 0.94806 0.98756 0.96165 0.89532 1.21614 1.00764 0.97515 0.95588 1.22106 1.01330 0.94431 0.99065 1.21482 0.89514 0.99729 0.84369 0.88093 1.48670 1.43861 1.14579 1.26979 1.20369 0.79635 0.83053 0.86132 1.90692 1.65790 1.27216 1.58082 1.20807 0.98658 0.98020 0.97046 1.20387 0.95973 0.95395 0.97131 1.22682 1.00765 0.96597 1.00899 1.21388 0.81758 0.94507 1.00698 1.88080 1.24827 1.87148 1.29995 1.22619 1.01804 0.93359 0.83876 1.21025 0.94616 0.98240 1.01323 1.21959 0.99347 0.83757 0.95513 0.92709 0.92725 0.94385 0.91845 0.94055 0.92271 0.90496 0.92118 0.89597 0.88401 0.88377 0.86713 0.91869 0.88110 0.88601 0.92394 0.90167 0.89800 0.91384 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.12 13.97 55.49 0.78 -27.35 16 2 C 0.02 0.48 5.49 -17.43 -0.10 0.38 16 3 Si 0.89 22.11 24.49 -169.99 -4.16 17.95 16 4 H -0.29 -6.84 6.36 56.52 0.36 -6.48 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.51 6.33 56.52 0.36 -6.15 16 7 C -0.23 -6.50 10.78 -15.06 -0.16 -6.67 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.61 -14.15 3.19 -168.96 -0.54 -14.69 16 10 C 0.13 2.47 6.53 -2.41 -0.02 2.46 16 11 C -0.10 -1.67 3.33 -89.42 -0.30 -1.96 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.09 -1.42 3.09 -89.60 -0.28 -1.69 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.10 2.05 3.99 -2.49 -0.01 2.04 16 16 C -0.09 -1.12 2.86 -90.28 -0.26 -1.38 16 17 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.12 -1.45 5.31 -26.74 -0.14 -1.59 16 19 C -0.13 -1.69 5.55 -26.35 -0.15 -1.83 16 20 C 0.15 2.11 3.12 -66.74 -0.21 1.90 16 21 H 0.10 1.53 7.20 -51.93 -0.37 1.15 16 22 N -0.61 -7.39 2.81 -163.33 -0.46 -7.85 16 23 C 0.52 6.57 7.74 -10.99 -0.09 6.48 16 24 O -0.54 -8.73 15.62 5.55 0.09 -8.65 16 25 C -0.11 -0.97 4.71 -29.04 -0.14 -1.10 16 26 C -0.09 -0.89 4.40 -100.93 -0.44 -1.33 16 27 C -0.19 -1.88 9.54 -35.96 -0.34 -2.22 16 28 C 0.09 0.84 7.04 35.78 0.25 1.09 16 29 O -0.38 -4.02 10.84 -35.23 -0.38 -4.41 16 30 C 0.06 0.55 6.89 37.23 0.26 0.80 16 31 C -0.11 -1.04 6.09 -27.96 -0.17 -1.21 16 32 C 0.12 1.16 5.29 -3.11 -0.02 1.14 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.69 5.24 -51.93 -0.27 0.42 16 36 H 0.06 1.42 5.07 -51.93 -0.26 1.16 16 37 H 0.04 0.83 3.95 -51.93 -0.21 0.63 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.09 5.80 -51.93 -0.30 0.79 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.18 5.70 -51.93 -0.30 0.89 16 42 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.10 0.77 7.86 -51.92 -0.41 0.36 16 44 H 0.11 1.03 7.83 -52.49 -0.41 0.62 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 49 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 52 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -33.21 379.49 -9.77 -42.98 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.51 Total: 0.99 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.30 Total: -4.69 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.22 Total: -49.89 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.30 Total: -13.05 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.16 Total: 17.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.21 -9.77 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089860914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.328 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds