Wall clock time and date at job start Sat Apr 11 2020 07:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48503 * 109.47202 * 265.38998 * 3 2 1 5 5 H 1.48500 * 109.47196 * 25.39147 * 3 2 1 6 6 H 1.48503 * 109.46921 * 145.39321 * 3 2 1 7 7 C 1.38808 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00397 * 343.38487 * 7 2 1 9 9 N 1.36942 * 120.00203 * 163.39473 * 7 2 1 10 10 C 1.48164 * 127.83906 * 160.92056 * 9 7 2 11 11 C 1.54375 * 104.55582 * 140.34066 * 10 9 7 12 12 H 1.09000 * 110.93977 * 263.56702 * 11 10 9 13 13 C 1.53689 * 104.88782 * 24.09031 * 11 10 9 14 14 H 1.09003 * 110.62341 * 239.47547 * 13 11 10 15 15 C 1.48145 * 127.83253 * 340.90090 * 9 7 2 16 16 C 1.53029 * 109.84252 * 116.83614 * 13 11 10 17 17 H 1.09000 * 110.13255 * 179.87263 * 16 13 11 18 18 C 1.53043 * 109.19681 * 300.30685 * 16 13 11 19 19 C 1.52934 * 110.00692 * 59.23626 * 18 16 13 20 20 C 1.53237 * 108.96958 * 141.22686 * 11 10 9 21 21 H 1.08999 * 110.94124 * 67.64838 * 20 11 10 22 22 N 1.47686 * 108.04683 * 188.92170 * 20 11 10 23 23 C 1.34778 * 122.07604 * 238.66483 * 22 20 11 24 24 O 1.21287 * 119.99745 * 359.70728 * 23 22 20 25 25 C 1.50696 * 120.00270 * 179.71616 * 23 22 20 26 26 C 1.50695 * 109.47246 * 179.97438 * 25 23 22 27 27 C 1.29981 * 118.74843 * 95.01503 * 26 25 23 28 28 C 1.50234 * 122.87214 * 180.43258 * 27 26 25 29 29 O 1.42911 * 110.13008 * 344.37696 * 28 27 26 30 30 C 1.43223 * 113.02224 * 50.17007 * 29 28 27 31 31 C 1.50391 * 118.74224 * 274.99449 * 26 25 23 32 32 C 1.47644 * 115.85027 * 58.38929 * 22 20 11 33 33 H 0.97003 * 119.99768 * 359.97438 * 1 2 3 34 34 H 1.08999 * 110.41147 * 21.57135 * 10 9 7 35 35 H 1.08995 * 110.51896 * 259.16089 * 10 9 7 36 36 H 1.08993 * 110.40463 * 338.26903 * 15 9 7 37 37 H 1.08995 * 110.40338 * 100.57160 * 15 9 7 38 38 H 1.09006 * 109.38106 * 179.39915 * 18 16 13 39 39 H 1.08997 * 109.38445 * 299.06843 * 18 16 13 40 40 H 1.08999 * 109.45549 * 120.90085 * 19 18 16 41 41 H 1.09004 * 109.45089 * 240.83271 * 19 18 16 42 42 H 1.08995 * 109.47252 * 59.99358 * 25 23 22 43 43 H 1.09009 * 109.46918 * 299.99217 * 25 23 22 44 44 H 1.07999 * 118.56357 * 0.41645 * 27 26 25 45 45 H 1.08997 * 109.35833 * 104.57998 * 28 27 26 46 46 H 1.09002 * 109.36155 * 224.17731 * 28 27 26 47 47 H 1.08992 * 109.65745 * 172.07950 * 30 29 28 48 48 H 1.09004 * 109.66811 * 51.54416 * 30 29 28 49 49 H 1.08999 * 109.44865 * 283.41051 * 31 26 25 50 50 H 1.08999 * 109.44770 * 43.36366 * 31 26 25 51 51 H 1.09000 * 109.99220 * 119.93148 * 32 22 20 52 52 H 1.09002 * 109.99096 * 241.30494 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9902 -1.3956 5 1 1.4024 2.6789 0.6003 6 1 3.4957 1.4702 0.7952 7 6 2.0102 -1.2021 -0.0005 8 1 1.5040 -2.1180 0.2665 9 7 3.3367 -1.2268 -0.3395 10 6 4.3318 -2.2831 -0.0403 11 6 5.1858 -2.3858 -1.3222 12 1 4.8313 -3.1934 -1.9628 13 6 5.0375 -1.0176 -2.0062 14 1 4.6112 -1.1309 -3.0030 15 6 4.1023 -0.2036 -1.0888 16 6 6.3978 -0.3199 -2.0728 17 1 6.2984 0.6504 -2.5593 18 6 6.9362 -0.1304 -0.6528 19 6 7.0785 -1.4872 0.0383 20 6 6.6506 -2.6040 -0.9287 21 1 6.7890 -3.5829 -0.4696 22 7 7.4749 -2.4834 -2.1482 23 6 8.2643 -3.4865 -2.5806 24 8 8.3173 -4.5272 -1.9598 25 6 9.0813 -3.3152 -3.8352 26 6 9.8703 -4.5722 -4.0965 27 6 9.3765 -5.4640 -4.9030 28 6 10.0789 -6.7532 -5.2216 29 8 11.4502 -6.6768 -4.8267 30 6 11.6208 -6.2174 -3.4810 31 6 11.1993 -4.7467 -3.4146 32 6 7.3756 -1.1980 -2.8677 33 1 -0.4850 0.8401 0.0004 34 1 3.8317 -3.2306 0.1605 35 1 4.9523 -1.9943 0.8079 36 1 3.4294 0.4162 -1.6812 37 1 4.6823 0.4144 -0.4034 38 1 7.9103 0.3569 -0.6972 39 1 6.2468 0.4943 -0.0849 40 1 8.1172 -1.6374 0.3329 41 1 6.4432 -1.5121 0.9236 42 1 9.7658 -2.4761 -3.7113 43 1 8.4171 -3.1210 -4.6776 44 1 8.4193 -5.2697 -5.3640 45 1 9.5940 -7.5704 -4.6876 46 1 10.0215 -6.9405 -6.2939 47 1 12.6671 -6.3128 -3.1908 48 1 10.9977 -6.8085 -2.8097 49 1 11.9474 -4.1318 -3.9148 50 1 11.1152 -4.4399 -2.3720 51 1 8.3540 -0.7197 -2.9129 52 1 6.9935 -1.3634 -3.8751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089860914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:58 Heat of formation + Delta-G solvation = -45.078769 kcal Electronic energy + Delta-G solvation = -32118.728155 eV Core-core repulsion = 28083.352524 eV Total energy + Delta-G solvation = -4035.375631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48306 -40.68786 -39.66343 -37.42389 -35.67213 -34.62938 -33.74005 -33.17089 -32.02778 -31.37938 -30.11254 -28.88506 -27.29795 -25.65348 -25.05639 -24.56317 -23.32642 -22.81335 -22.30173 -20.77132 -19.11289 -18.96064 -18.35357 -17.88870 -17.58616 -17.42462 -17.22226 -17.02880 -16.52478 -16.24868 -15.83700 -15.61529 -15.56093 -14.93779 -14.71219 -14.58200 -14.46437 -14.08690 -14.00159 -13.86449 -13.66063 -13.56351 -13.35277 -13.24283 -13.16161 -13.02048 -12.88391 -12.69711 -12.60177 -12.22845 -12.17348 -12.10281 -11.74538 -11.54977 -11.51409 -11.22006 -11.13737 -11.05374 -10.84790 -10.70959 -10.60070 -9.77352 -9.50333 -9.08316 -8.16856 -5.46878 1.08395 1.27407 1.38424 1.47968 1.67754 2.06087 2.40733 2.93688 3.05731 3.23534 3.49383 3.62152 3.67430 3.69015 3.77303 3.86149 4.02387 4.04583 4.07816 4.11371 4.20572 4.28175 4.32099 4.40663 4.44527 4.45656 4.47031 4.54766 4.57418 4.58364 4.64355 4.69963 4.72500 4.80706 4.81767 4.85553 4.91066 4.93656 4.97844 5.00906 5.11737 5.20787 5.24936 5.31616 5.36616 5.41806 5.52325 5.58944 5.65028 5.87150 6.09533 6.15672 6.53852 6.69146 7.21874 7.48864 8.14354 9.03704 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.002549 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.464185 B =10983.055409 C =11279.530332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.047 4.047 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.313 1.313 6 H -0.256 1.256 7 C -0.226 4.226 8 H 0.053 0.947 9 N -0.629 5.629 10 C 0.127 3.873 11 C -0.094 4.094 12 H 0.062 0.938 13 C -0.082 4.082 14 H 0.075 0.925 15 C 0.098 3.902 16 C -0.089 4.089 17 H 0.111 0.889 18 C -0.116 4.116 19 C -0.127 4.127 20 C 0.159 3.841 21 H 0.082 0.918 22 N -0.606 5.606 23 C 0.517 3.483 24 O -0.585 6.585 25 C -0.097 4.097 26 C -0.103 4.103 27 C -0.201 4.201 28 C 0.087 3.913 29 O -0.396 6.396 30 C 0.056 3.944 31 C -0.114 4.114 32 C 0.117 3.883 33 H 0.262 0.738 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.060 0.940 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.044 0.956 49 H 0.096 0.904 50 H 0.078 0.922 51 H 0.106 0.894 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.472 -3.101 -10.994 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.240 4.240 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.242 1.242 6 H -0.180 1.180 7 C -0.355 4.355 8 H 0.071 0.929 9 N -0.354 5.354 10 C 0.001 3.999 11 C -0.114 4.114 12 H 0.080 0.920 13 C -0.102 4.102 14 H 0.094 0.906 15 C -0.027 4.027 16 C -0.107 4.107 17 H 0.129 0.871 18 C -0.154 4.154 19 C -0.165 4.165 20 C 0.055 3.945 21 H 0.100 0.900 22 N -0.339 5.339 23 C 0.307 3.693 24 O -0.465 6.465 25 C -0.136 4.136 26 C -0.104 4.104 27 C -0.219 4.219 28 C 0.011 3.989 29 O -0.315 6.315 30 C -0.021 4.021 31 C -0.151 4.151 32 C -0.004 4.004 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.078 0.922 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.062 0.938 49 H 0.114 0.886 50 H 0.097 0.903 51 H 0.124 0.876 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 27.420 -3.621 -10.752 29.674 hybrid contribution -1.344 0.523 0.660 1.586 sum 26.076 -3.097 -10.091 28.131 Atomic orbital electron populations 1.69932 1.07339 1.27244 1.56908 1.25749 0.96009 1.01250 1.01023 0.85787 0.78081 0.79199 0.78428 1.19282 1.24174 1.18002 1.18563 0.83313 0.93668 1.39926 0.92880 1.45339 1.05087 1.21541 1.63479 1.22061 0.90322 0.91666 0.95822 1.22196 0.94536 0.97476 0.97223 0.91988 1.21890 0.95673 0.94154 0.98496 0.90612 1.22511 0.93494 0.92722 0.93925 1.21470 0.92524 0.99889 0.96857 0.87064 1.21625 1.02014 0.96549 0.95166 1.22051 1.01736 0.94564 0.98154 1.21180 0.88246 0.99415 0.85692 0.89975 1.48707 1.43167 1.15640 1.26396 1.21007 0.79415 0.82217 0.86687 1.90683 1.67220 1.28991 1.59598 1.20830 0.98781 0.98519 0.95450 1.20648 0.96548 0.96052 0.97136 1.22871 1.01073 0.96758 1.01204 1.21527 0.81243 0.94325 1.01781 1.88056 1.25562 1.87319 1.30567 1.22729 1.02736 0.93451 0.83146 1.21031 0.94783 0.98173 1.01071 1.22216 1.00749 0.82011 0.95428 0.92937 0.94423 0.92844 0.93903 0.92844 0.89067 0.92365 0.90689 0.91179 0.85527 0.86497 0.86103 0.92210 0.86322 0.86733 0.93791 0.88591 0.90327 0.87553 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.86 13.97 21.65 0.30 -61.55 16 2 C -0.05 -2.78 5.49 84.86 0.47 -2.32 16 3 Si 0.96 46.03 24.49 68.60 1.68 47.71 16 4 H -0.27 -11.84 6.36 99.48 0.63 -11.21 16 5 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 6 H -0.26 -11.45 6.33 99.48 0.63 -10.82 16 7 C -0.23 -13.19 10.78 84.03 0.91 -12.28 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.63 -29.83 3.19 -688.46 -2.20 -32.03 16 10 C 0.13 4.90 6.53 86.53 0.57 5.47 16 11 C -0.09 -2.92 3.33 -10.02 -0.03 -2.96 16 12 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 13 C -0.08 -2.40 3.09 -10.13 -0.03 -2.43 16 14 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.10 3.80 3.99 86.48 0.35 4.14 16 16 C -0.09 -1.71 2.86 -10.57 -0.03 -1.74 16 17 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 18 C -0.12 -2.34 5.31 30.59 0.16 -2.17 16 19 C -0.13 -2.91 5.55 30.84 0.17 -2.74 16 20 C 0.16 4.13 3.12 45.11 0.14 4.27 16 21 H 0.08 2.47 7.20 -2.39 -0.02 2.45 16 22 N -0.61 -12.60 2.81 -789.05 -2.22 -14.82 16 23 C 0.52 11.56 7.74 87.66 0.68 12.24 16 24 O -0.58 -18.28 15.62 -3.05 -0.05 -18.33 16 25 C -0.10 -1.37 4.71 29.10 0.14 -1.23 16 26 C -0.10 -1.81 4.40 -15.53 -0.07 -1.88 16 27 C -0.20 -3.57 9.54 26.55 0.25 -3.31 16 28 C 0.09 1.48 7.04 71.09 0.50 1.98 16 29 O -0.40 -7.82 10.84 -148.98 -1.62 -9.43 16 30 C 0.06 0.94 6.89 72.03 0.50 1.44 16 31 C -0.11 -1.80 6.09 29.80 0.18 -1.62 16 32 C 0.12 1.65 5.29 86.36 0.46 2.11 16 33 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.93 5.24 -2.39 -0.01 1.92 16 36 H 0.04 1.84 5.07 -2.39 -0.01 1.83 16 37 H 0.05 1.99 3.95 -2.39 -0.01 1.98 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.06 1.42 5.80 -2.39 -0.01 1.41 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.82 5.70 -2.38 -0.01 1.81 16 42 H 0.13 1.10 8.09 -2.39 -0.02 1.08 16 43 H 0.12 1.25 7.86 -2.38 -0.02 1.23 16 44 H 0.12 1.92 7.83 -2.91 -0.02 1.89 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.04 0.84 8.10 -2.38 -0.02 0.82 16 49 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.11 0.84 8.11 -2.39 -0.02 0.82 16 52 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -76.80 379.49 1.96 -74.83 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.76 Total: 16.67 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.30 Total: -3.05 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -4.11 Total: -108.40 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.66 Total: -27.77 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.68 Total: 47.71 kcal Total: -76.80 1.96 -74.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089860914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.756 kcal (2) G-P(sol) polarization free energy of solvation -76.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds