Wall clock time and date at job start Sat Apr 11 2020 07:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86794 * 120.00417 * 2 1 4 4 H 1.48500 * 109.47090 * 269.99689 * 3 2 1 5 5 H 1.48498 * 109.47042 * 29.99446 * 3 2 1 6 6 H 1.48504 * 109.47591 * 149.99706 * 3 2 1 7 7 C 1.38816 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00205 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00024 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00280 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47241 * 177.72061 * 10 9 7 12 12 C 1.52998 * 112.84903 * 70.15783 * 11 10 9 13 13 H 1.09001 * 109.69689 * 176.95103 * 12 11 10 14 14 C 1.53191 * 109.58786 * 297.30332 * 12 11 10 15 15 C 1.53035 * 109.33991 * 174.40722 * 14 12 11 16 16 C 1.53038 * 109.54044 * 298.68454 * 15 14 12 17 17 C 1.53191 * 109.33903 * 61.31562 * 16 15 14 18 18 N 1.46921 * 109.58856 * 56.59467 * 12 11 10 19 19 C 1.34784 * 120.63022 * 6.62438 * 18 12 11 20 20 O 1.21280 * 119.99690 * 7.15357 * 19 18 12 21 21 C 1.50700 * 119.99824 * 187.15257 * 19 18 12 22 22 C 1.50699 * 109.46686 * 180.02562 * 21 19 18 23 23 C 1.34513 * 125.79009 * 90.00434 * 22 21 19 24 24 C 1.41384 * 106.84136 * 179.97438 * 23 22 21 25 25 C 1.34516 * 106.83991 * 359.97438 * 24 23 22 26 26 O 1.34300 * 108.41798 * 359.73453 * 25 24 23 27 27 C 1.53781 * 113.61142 * 201.35603 * 11 10 9 28 28 C 1.53954 * 87.02339 * 89.22906 * 27 11 10 29 29 C 1.53781 * 87.10982 * 25.36005 * 28 27 11 30 30 H 0.96999 * 119.99600 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99880 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47002 * 57.72250 * 10 9 7 33 33 H 1.08996 * 109.47431 * 297.72239 * 10 9 7 34 34 H 1.09005 * 109.49648 * 294.38163 * 14 12 11 35 35 H 1.08999 * 109.49342 * 54.43711 * 14 12 11 36 36 H 1.08999 * 109.45994 * 58.67673 * 15 14 12 37 37 H 1.09003 * 109.45929 * 178.62780 * 15 14 12 38 38 H 1.09002 * 109.47080 * 301.36800 * 16 15 14 39 39 H 1.08989 * 109.49692 * 181.28539 * 16 15 14 40 40 H 1.09001 * 109.58780 * 185.59440 * 17 16 15 41 41 H 1.08999 * 109.58726 * 65.16750 * 17 16 15 42 42 H 1.08999 * 109.47203 * 299.99796 * 21 19 18 43 43 H 1.09000 * 109.46981 * 60.00212 * 21 19 18 44 44 H 1.08005 * 126.57854 * 0.02604 * 23 22 21 45 45 H 1.08003 * 126.57778 * 180.02562 * 24 23 22 46 46 H 1.07999 * 125.78481 * 180.02562 * 25 24 23 47 47 H 1.09007 * 113.61025 * 203.74747 * 27 11 10 48 48 H 1.08998 * 113.61872 * 334.64869 * 27 11 10 49 49 H 1.08997 * 113.53832 * 270.81044 * 28 27 11 50 50 H 1.08998 * 113.74345 * 139.94150 * 28 27 11 51 51 H 1.08997 * 113.61820 * 220.09356 * 29 28 27 52 52 H 1.09003 * 113.69296 * 89.20170 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0022 11 6 5.6153 -2.1921 -0.0548 12 6 6.1567 -1.5861 1.2416 13 1 7.2365 -1.4590 1.1648 14 6 5.4957 -0.2263 1.4880 15 6 5.9346 0.3108 2.8522 16 6 5.4823 -0.6532 3.9514 17 6 6.1430 -2.0178 3.7329 18 7 5.8442 -2.4750 2.3689 19 6 5.2943 -3.6869 2.1559 20 8 5.1721 -4.1070 1.0247 21 6 4.8313 -4.5200 3.3233 22 6 4.2602 -5.8197 2.8176 23 6 4.9498 -6.9572 2.6180 24 6 4.0273 -7.9175 2.1428 25 6 2.8290 -7.3095 2.0811 26 8 2.9749 -6.0408 2.4969 27 6 6.4430 -3.3804 -0.5721 28 6 6.2315 -2.8089 -1.9858 29 6 6.0537 -1.4345 -1.3192 30 1 -0.4849 0.8401 -0.0004 31 1 3.8646 -0.3623 0.0014 32 1 3.8187 -3.0607 -0.8664 33 1 3.8793 -3.0241 0.9121 34 1 5.7982 0.4720 0.7075 35 1 4.4119 -0.3407 1.4735 36 1 7.0206 0.4021 2.8742 37 1 5.4847 1.2895 3.0190 38 1 4.3985 -0.7636 3.9143 39 1 5.7752 -0.2587 4.9243 40 1 5.7483 -2.7345 4.4532 41 1 7.2218 -1.9260 3.8593 42 1 5.6762 -4.7260 3.9804 43 1 4.0650 -3.9766 3.8761 44 1 6.0056 -7.1082 2.7887 45 1 4.2432 -8.9427 1.8806 46 1 1.9053 -7.7657 1.7570 47 1 7.4828 -3.3634 -0.2453 48 1 5.9647 -4.3472 -0.4149 49 1 5.3293 -3.1774 -2.4739 50 1 7.1139 -2.8745 -2.6223 51 1 5.2615 -0.8325 -1.7642 52 1 6.9861 -0.8833 -1.1966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105570262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:30 Heat of formation + Delta-G solvation = 66.959574 kcal Electronic energy + Delta-G solvation = -33886.264522 eV Core-core repulsion = 29855.747238 eV Total energy + Delta-G solvation = -4030.517284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.45651 -42.45162 -39.26410 -38.30333 -36.24353 -34.24045 -33.81264 -33.33858 -32.91931 -31.85296 -28.76397 -28.12940 -26.57453 -26.32673 -25.13228 -23.69614 -23.18302 -22.60501 -22.18214 -21.31567 -20.28628 -19.93527 -18.62646 -18.27264 -18.00465 -17.28061 -16.92547 -16.66141 -16.60237 -16.15789 -15.67484 -15.43747 -15.32108 -15.06942 -14.87173 -14.55423 -14.42586 -14.25641 -13.97142 -13.85072 -13.64865 -13.52121 -13.45425 -13.21653 -13.08989 -12.93472 -12.81433 -12.67590 -12.34548 -12.17237 -11.97876 -11.84734 -11.81253 -11.56120 -11.29184 -11.05034 -11.02511 -10.80088 -10.75796 -10.60653 -10.00670 -9.39887 -9.29838 -9.00954 -8.03721 -5.33172 0.83387 1.30062 1.34948 1.42449 1.70183 1.78863 2.09237 2.36484 2.45444 3.26965 3.54169 3.61710 3.72184 3.84653 3.86516 4.00011 4.04291 4.09546 4.15399 4.20286 4.20643 4.21746 4.32381 4.39035 4.46064 4.48057 4.53066 4.62757 4.76840 4.82336 4.86898 4.89835 4.96462 4.97150 4.99883 5.06722 5.09545 5.12107 5.20157 5.25594 5.28866 5.33981 5.36399 5.44121 5.56946 5.65463 5.68872 5.70826 5.80878 5.87713 6.21326 6.30201 6.60290 7.09159 7.47963 7.88619 8.11472 9.19130 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.004944 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.310089 B = 5661.500507 C = 6239.742796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.064 4.064 3 Si 0.944 3.056 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.233 1.233 7 C -0.227 4.227 8 H 0.038 0.962 9 N -0.753 5.753 10 C 0.192 3.808 11 C -0.065 4.065 12 C 0.176 3.824 13 H 0.094 0.906 14 C -0.169 4.169 15 C -0.113 4.113 16 C -0.137 4.137 17 C 0.105 3.895 18 N -0.601 5.601 19 C 0.487 3.513 20 O -0.519 6.519 21 C -0.058 4.058 22 C -0.012 4.012 23 C -0.202 4.202 24 C -0.220 4.220 25 C -0.057 4.057 26 O -0.204 6.204 27 C -0.092 4.092 28 C -0.145 4.145 29 C -0.139 4.139 30 H 0.256 0.744 31 H 0.371 0.629 32 H -0.019 1.019 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.159 0.841 43 H 0.108 0.892 44 H 0.166 0.834 45 H 0.170 0.830 46 H 0.221 0.779 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.048 0.952 50 H 0.081 0.919 51 H 0.040 0.960 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.510 -8.491 11.416 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.255 4.255 3 Si 0.770 3.230 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.157 1.157 7 C -0.358 4.358 8 H 0.056 0.944 9 N -0.402 5.402 10 C 0.067 3.933 11 C -0.066 4.066 12 C 0.073 3.927 13 H 0.111 0.889 14 C -0.207 4.207 15 C -0.151 4.151 16 C -0.175 4.175 17 C -0.016 4.016 18 N -0.335 5.335 19 C 0.277 3.723 20 O -0.398 6.398 21 C -0.097 4.097 22 C -0.062 4.062 23 C -0.221 4.221 24 C -0.239 4.239 25 C -0.124 4.124 26 O -0.101 6.101 27 C -0.129 4.129 28 C -0.183 4.183 29 C -0.177 4.177 30 H 0.065 0.935 31 H 0.208 0.792 32 H -0.001 1.001 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.177 0.823 43 H 0.127 0.873 44 H 0.184 0.816 45 H 0.187 0.813 46 H 0.237 0.763 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.067 0.933 50 H 0.100 0.900 51 H 0.058 0.942 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.048 -8.603 10.865 25.201 hybrid contribution -0.956 0.936 -0.692 1.506 sum 20.092 -7.666 10.174 23.790 Atomic orbital electron populations 1.69905 1.07218 1.26469 1.60288 1.25472 0.96092 1.01021 1.02924 0.85632 0.79682 0.79526 0.78129 1.21118 1.22033 1.15676 1.18987 0.83356 0.92798 1.40702 0.94407 1.43360 1.02064 1.04814 1.89985 1.21124 0.89133 0.85379 0.97622 1.21942 0.94127 0.97280 0.93223 1.21092 0.98536 0.88457 0.84631 0.88855 1.22612 1.03024 0.96286 0.98807 1.21472 1.01871 0.98402 0.93321 1.21935 0.99947 0.95706 0.99875 1.22049 1.01808 0.96206 0.81553 1.47990 1.62036 1.15263 1.08207 1.20688 0.78443 0.82261 0.90908 1.90891 1.53626 1.72027 1.23260 1.20300 1.02940 0.89521 0.96982 1.22057 0.81604 0.97645 1.04858 1.21782 1.01448 0.92527 1.06370 1.22125 0.92621 1.02233 1.06900 1.24626 1.02262 0.81539 1.04013 1.84041 1.29787 1.31262 1.65027 1.23214 0.98176 0.98693 0.92788 1.22850 1.00786 0.96732 0.97883 1.23059 1.01073 0.96768 0.96823 0.93496 0.79169 1.00067 0.93635 0.91806 0.91043 0.89540 0.92667 0.94216 0.87951 0.87651 0.88203 0.82323 0.87344 0.81611 0.81280 0.76268 0.89773 0.89686 0.93330 0.90033 0.94156 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.70 13.97 21.65 0.30 -66.40 16 2 C -0.06 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.94 47.05 27.73 68.60 1.90 48.96 16 4 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 5 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 6 H -0.23 -10.11 5.26 99.48 0.52 -9.59 16 7 C -0.23 -14.15 10.47 84.03 0.88 -13.27 16 8 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 9 N -0.75 -38.44 3.57 -343.45 -1.23 -39.67 16 10 C 0.19 8.74 4.19 86.38 0.36 9.10 16 11 C -0.06 -2.17 0.08 -51.65 0.00 -2.18 16 12 C 0.18 4.74 2.34 44.97 0.11 4.85 16 13 H 0.09 2.02 8.13 -2.39 -0.02 2.00 16 14 C -0.17 -5.05 3.36 30.67 0.10 -4.95 16 15 C -0.11 -2.47 5.89 30.62 0.18 -2.29 16 16 C -0.14 -2.56 6.08 30.67 0.19 -2.38 16 17 C 0.11 1.59 6.35 86.36 0.55 2.14 16 18 N -0.60 -14.39 2.94 -795.04 -2.34 -16.73 16 19 C 0.49 13.64 5.94 87.66 0.52 14.16 16 20 O -0.52 -18.21 6.84 -3.03 -0.02 -18.23 16 21 C -0.06 -1.28 4.60 29.10 0.13 -1.14 16 22 C -0.01 -0.32 5.81 24.83 0.14 -0.18 16 23 C -0.20 -4.87 10.81 22.19 0.24 -4.63 16 24 C -0.22 -5.18 10.91 22.19 0.24 -4.94 16 25 C -0.06 -1.53 12.09 66.97 0.81 -0.72 16 26 O -0.20 -6.85 10.65 -2.44 -0.03 -6.88 16 27 C -0.09 -2.76 5.83 31.18 0.18 -2.58 16 28 C -0.15 -4.45 7.74 31.18 0.24 -4.21 16 29 C -0.14 -4.40 6.52 31.12 0.20 -4.20 16 30 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 31 H 0.37 17.54 2.59 -92.70 -0.24 17.30 16 32 H -0.02 -0.99 7.34 -2.39 -0.02 -1.00 16 33 H 0.05 2.21 4.40 -22.97 -0.10 2.11 16 34 H 0.06 1.89 7.89 -2.38 -0.02 1.87 16 35 H 0.07 2.85 4.32 -2.39 -0.01 2.84 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 1.10 5.93 -2.39 -0.01 1.09 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.16 1.90 7.65 -2.39 -0.02 1.88 16 43 H 0.11 2.37 7.98 -2.39 -0.02 2.35 16 44 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 46 H 0.22 4.35 8.06 -2.91 -0.02 4.33 16 47 H 0.08 2.10 8.09 -2.38 -0.02 2.08 16 48 H 0.09 3.03 5.55 -35.52 -0.20 2.83 16 49 H 0.05 1.75 7.65 -2.39 -0.02 1.73 16 50 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 52 H 0.10 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -83.65 382.25 4.36 -79.29 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: 0.23 Total: 40.62 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 5.55 Total: -20.96 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -3.26 Total: -122.79 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.10 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.96 kcal Total: -83.65 4.36 -79.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105570262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.248 kcal (2) G-P(sol) polarization free energy of solvation -83.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds