Wall clock time and date at job start Sat Apr 11 2020 07:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00189 * 2 1 4 4 H 1.48504 * 109.47011 * 270.00024 * 3 2 1 5 5 H 1.48498 * 109.47358 * 29.99937 * 3 2 1 6 6 H 1.48500 * 109.47028 * 149.99988 * 3 2 1 7 7 C 1.38811 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00375 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00146 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47349 * 179.97438 * 10 9 7 12 12 C 1.54167 * 112.55085 * 298.08417 * 11 10 9 13 13 C 1.53954 * 104.74766 * 214.63580 * 12 11 10 14 14 C 1.54846 * 103.15403 * 37.00437 * 13 12 11 15 15 C 1.54163 * 104.32514 * 322.50491 * 14 13 12 16 16 H 1.08998 * 111.81927 * 146.20607 * 15 14 13 17 17 C 1.54703 * 109.51969 * 270.98365 * 15 14 13 18 18 N 1.48119 * 104.50620 * 137.99507 * 17 15 14 19 19 C 1.34779 * 127.84118 * 140.23287 * 18 17 15 20 20 O 1.21275 * 120.00236 * 179.67777 * 19 18 17 21 21 C 1.50705 * 120.00098 * 359.68034 * 19 18 17 22 22 H 1.08995 * 110.80542 * 56.67751 * 21 19 18 23 23 C 1.56777 * 110.74257 * 292.38223 * 21 19 18 24 24 C 1.55825 * 102.92987 * 241.81815 * 23 21 19 25 25 H 1.08998 * 115.93557 * 158.64917 * 24 23 21 26 26 O 1.46534 * 101.24573 * 32.62689 * 24 23 21 27 27 C 1.46531 * 99.68085 * 305.84656 * 26 24 23 28 28 H 1.09001 * 115.68155 * 180.34225 * 27 26 24 29 29 C 1.55820 * 101.24523 * 305.83612 * 27 26 24 30 30 H 1.09002 * 118.19714 * 171.69666 * 29 27 26 31 31 C 1.52997 * 117.23731 * 328.39448 * 29 27 26 32 32 C 1.55005 * 102.78632 * 32.41787 * 29 27 26 33 33 H 1.08998 * 123.14386 * 135.79846 * 32 29 27 34 34 C 1.48117 * 104.31632 * 319.97318 * 18 17 15 35 35 H 0.97002 * 119.99321 * 0.02562 * 1 2 3 36 36 H 0.97005 * 120.00212 * 359.97438 * 9 7 2 37 37 H 1.09002 * 109.46717 * 59.99900 * 10 9 7 38 38 H 1.08993 * 109.47119 * 300.00094 * 10 9 7 39 39 H 1.08996 * 110.45608 * 332.06268 * 12 11 10 40 40 H 1.08994 * 110.46002 * 94.64052 * 12 11 10 41 41 H 1.09003 * 109.96263 * 278.83166 * 13 12 11 42 42 H 1.09004 * 111.15953 * 155.73593 * 13 12 11 43 43 H 1.09008 * 110.46072 * 203.79954 * 14 13 12 44 44 H 1.08991 * 110.57272 * 81.27220 * 14 13 12 45 45 H 1.09002 * 110.51722 * 19.23678 * 17 15 14 46 46 H 1.08991 * 110.44763 * 256.71866 * 17 15 14 47 47 H 1.08999 * 110.50115 * 123.53319 * 23 21 19 48 48 H 1.09004 * 111.02585 * 0.34519 * 23 21 19 49 49 H 1.09002 * 117.41030 * 198.47685 * 31 29 27 50 50 H 1.08997 * 117.41599 * 343.00034 * 31 29 27 51 51 H 1.08994 * 110.39176 * 158.78984 * 34 18 17 52 52 H 1.09002 * 110.38685 * 281.06586 * 34 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1915 -0.0009 12 6 6.0752 -1.4234 -1.2564 13 6 7.4809 -1.9730 -1.5601 14 6 7.3564 -3.4749 -1.2047 15 6 6.4474 -3.4983 0.0402 16 1 5.8124 -4.3840 0.0616 17 6 7.3143 -3.3753 1.3156 18 7 6.5658 -2.4374 2.1839 19 6 6.3941 -2.5046 3.5190 20 8 5.7536 -1.6489 4.0919 21 6 6.9981 -3.6432 4.3000 22 1 8.0754 -3.6925 4.1421 23 6 6.3008 -4.9989 3.9342 24 6 5.6801 -5.4489 5.2909 25 1 4.8568 -6.1602 5.2258 26 8 5.3558 -4.1560 5.8996 27 6 6.6678 -3.5087 5.8168 28 1 6.7216 -2.4970 6.2188 29 6 7.5707 -4.5597 6.5297 30 1 8.6506 -4.4140 6.5025 31 6 6.9331 -5.3876 7.6472 32 6 6.8871 -5.9024 6.1658 33 1 7.4404 -6.7854 5.8461 34 6 6.0542 -1.4053 1.2528 35 1 -0.4849 0.8401 -0.0004 36 1 3.8647 -0.3622 0.0004 37 1 3.8490 -3.0416 -0.8919 38 1 3.8484 -3.0436 0.8880 39 1 5.4167 -1.6402 -2.0974 40 1 6.1023 -0.3519 -1.0587 41 1 8.2173 -1.4847 -0.9217 42 1 7.7346 -1.8447 -2.6124 43 1 8.3352 -3.8933 -0.9697 44 1 6.8945 -4.0254 -2.0242 45 1 8.2955 -2.9672 1.0727 46 1 7.4152 -4.3452 1.8024 47 1 7.0359 -5.7246 3.5864 48 1 5.5235 -4.8492 3.1848 49 1 7.6035 -5.8880 8.3460 50 1 6.0004 -5.0197 8.0747 51 1 5.2026 -0.8860 1.6922 52 1 6.8427 -0.6957 1.0020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112481052.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:34 Heat of formation + Delta-G solvation = -7.182528 kcal Electronic energy + Delta-G solvation = -32474.151956 eV Core-core repulsion = 28440.419629 eV Total energy + Delta-G solvation = -4033.732327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72166 -40.50562 -38.37216 -34.89860 -34.48119 -34.32902 -32.36646 -31.63331 -30.02605 -29.71825 -29.23457 -26.26978 -25.69641 -24.31738 -23.67892 -22.59851 -21.78983 -20.72577 -20.24230 -20.16509 -19.11982 -18.69991 -17.66537 -17.24801 -16.87670 -16.22992 -15.96386 -15.41384 -15.11443 -14.62146 -14.39992 -14.37183 -14.13015 -13.78744 -13.43158 -13.27158 -13.03001 -12.84473 -12.74759 -12.65826 -12.53655 -12.08429 -11.95751 -11.82753 -11.73813 -11.50695 -11.49636 -11.42234 -11.04955 -10.91963 -10.88394 -10.68194 -10.58015 -10.46808 -10.43038 -10.27310 -10.16068 -10.01462 -9.94464 -9.57928 -9.51670 -8.84431 -8.60529 -7.16867 -5.70722 -3.05707 2.69785 2.88810 3.22469 3.42184 3.45513 3.50488 3.54404 4.17226 4.21738 4.31155 4.35072 4.42965 4.48627 4.57834 4.64182 4.65307 4.71804 4.84324 4.89785 5.03500 5.07480 5.15994 5.19459 5.22530 5.26385 5.30461 5.42157 5.45216 5.48210 5.49082 5.54994 5.60707 5.60910 5.68504 5.74014 5.77624 5.82148 5.84333 5.89516 5.94541 5.97981 6.09997 6.11677 6.20380 6.32378 6.37717 6.39040 6.44613 6.67318 6.75963 7.65304 8.04665 8.27532 8.48203 9.26982 9.99452 10.18944 11.47945 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.003656 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.523140 B = 7657.740836 C = 9179.287274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.179 3.821 11 C -0.078 4.078 12 C -0.110 4.110 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.097 4.097 16 H 0.089 0.911 17 C 0.106 3.894 18 N -0.619 5.619 19 C 0.541 3.459 20 O -0.525 6.525 21 C -0.129 4.129 22 H 0.107 0.893 23 C -0.130 4.130 24 C 0.088 3.912 25 H 0.134 0.866 26 O -0.357 6.357 27 C 0.115 3.885 28 H 0.137 0.863 29 C -0.195 4.195 30 H 0.121 0.879 31 C -0.132 4.132 32 C -0.199 4.199 33 H 0.123 0.877 34 C 0.112 3.888 35 H 0.259 0.741 36 H 0.360 0.640 37 H 0.030 0.970 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.093 0.907 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.982 -13.992 6.056 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.052 3.948 11 C -0.079 4.079 12 C -0.148 4.148 13 C -0.162 4.162 14 C -0.151 4.151 15 C -0.117 4.117 16 H 0.108 0.892 17 C -0.017 4.017 18 N -0.353 5.353 19 C 0.329 3.671 20 O -0.400 6.400 21 C -0.150 4.150 22 H 0.125 0.875 23 C -0.168 4.168 24 C 0.030 3.970 25 H 0.152 0.848 26 O -0.275 6.275 27 C 0.056 3.944 28 H 0.154 0.846 29 C -0.214 4.214 30 H 0.138 0.862 31 C -0.169 4.169 32 C -0.217 4.217 33 H 0.141 0.859 34 C -0.010 4.010 35 H 0.069 0.931 36 H 0.193 0.807 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.112 0.888 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.148 -13.506 6.591 27.599 hybrid contribution 0.870 1.133 -0.206 1.443 sum 24.019 -12.373 6.385 27.762 Atomic orbital electron populations 1.69703 1.05086 1.25736 1.57751 1.24642 0.95207 0.97111 1.02069 0.86581 0.79437 0.85191 0.77602 1.21098 1.21685 1.20302 1.19027 0.80591 0.94677 1.42776 0.89316 1.42673 1.03991 1.02061 1.91039 1.20509 0.86436 0.89391 0.98440 1.22320 0.96788 0.94261 0.94514 1.22193 0.96009 0.99393 0.97239 1.22347 0.97497 0.95443 1.00902 1.22330 0.98800 0.96933 0.97021 1.22755 0.96327 0.98621 0.93993 0.89239 1.22605 0.94988 0.93617 0.90525 1.48903 1.53297 1.27574 1.05568 1.19857 0.80307 0.86501 0.80393 1.90763 1.39978 1.40931 1.68294 1.23167 1.01266 0.94451 0.96133 0.87528 1.23451 1.00483 0.94556 0.98300 1.24255 0.95351 0.86818 0.90547 0.84821 1.90221 1.29097 1.27079 1.81100 1.23969 0.81683 0.97287 0.91413 0.84594 1.24348 0.99458 0.93697 1.03849 0.86152 1.23388 1.02749 1.00937 0.89784 1.24962 1.00809 0.98284 0.97693 0.85872 1.22561 0.99554 0.90437 0.88488 0.93117 0.80665 0.95230 0.95687 0.90635 0.91430 0.92003 0.91446 0.91617 0.91103 0.91096 0.90564 0.89688 0.89592 0.87914 0.88021 0.88817 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.31 13.97 55.49 0.78 -29.53 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 23.01 27.74 -169.99 -4.71 18.29 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.75 -18.25 4.73 -59.91 -0.28 -18.54 16 10 C 0.18 3.51 5.20 -4.04 -0.02 3.49 16 11 C -0.08 -1.14 0.64 -152.19 -0.10 -1.24 16 12 C -0.11 -1.48 5.18 -25.62 -0.13 -1.61 16 13 C -0.12 -1.22 6.81 -25.26 -0.17 -1.39 16 14 C -0.11 -0.99 6.15 -25.15 -0.15 -1.15 16 15 C -0.10 -1.05 3.55 -88.10 -0.31 -1.37 16 16 H 0.09 0.97 7.88 -51.93 -0.41 0.56 16 17 C 0.11 1.04 6.26 -2.26 -0.01 1.02 16 18 N -0.62 -8.67 3.31 -169.20 -0.56 -9.23 16 19 C 0.54 8.43 7.12 -10.98 -0.08 8.35 16 20 O -0.52 -10.82 16.19 5.56 0.09 -10.73 16 21 C -0.13 -1.42 2.31 -88.23 -0.20 -1.62 16 22 H 0.11 0.89 8.03 -51.93 -0.42 0.47 16 23 C -0.13 -1.25 4.70 -23.18 -0.11 -1.36 16 24 C 0.09 0.91 5.67 -23.72 -0.13 0.77 16 25 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 26 O -0.36 -5.18 10.80 -35.23 -0.38 -5.56 16 27 C 0.11 1.38 4.48 -23.72 -0.11 1.27 16 28 H 0.14 1.76 7.80 -51.93 -0.41 1.36 16 29 C -0.20 -1.69 6.49 -88.06 -0.57 -2.26 16 30 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 31 C -0.13 -1.09 10.01 -24.62 -0.25 -1.34 16 32 C -0.20 -1.61 6.79 -85.94 -0.58 -2.20 16 33 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 34 C 0.11 1.79 5.77 -2.46 -0.01 1.78 16 35 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 36 H 0.36 8.58 4.72 -40.82 -0.19 8.39 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 1.09 7.99 -51.93 -0.41 0.68 16 40 H 0.07 0.95 7.74 -51.93 -0.40 0.55 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.45 7.79 -51.92 -0.40 0.05 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 46 H 0.08 0.59 6.14 -51.93 -0.32 0.27 16 47 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 48 H 0.09 0.99 7.80 -51.93 -0.41 0.59 16 49 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.10 1.00 7.68 -51.93 -0.40 0.60 16 51 H 0.09 1.93 6.87 -51.93 -0.36 1.57 16 52 H 0.07 0.95 7.62 -51.93 -0.40 0.55 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -36.41 393.89 -11.07 -47.48 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.73 Total: 7.87 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.21 Total: -5.99 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.07 Total: -57.30 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.29 Total: -16.29 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.41 -11.07 -47.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112481052.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.293 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds