Wall clock time and date at job start Sat Apr 11 2020 07:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00189 * 2 1 4 4 H 1.48504 * 109.47011 * 270.00024 * 3 2 1 5 5 H 1.48498 * 109.47358 * 29.99937 * 3 2 1 6 6 H 1.48500 * 109.47028 * 149.99988 * 3 2 1 7 7 C 1.38811 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00375 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00146 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47349 * 179.97438 * 10 9 7 12 12 C 1.54167 * 112.55085 * 298.08417 * 11 10 9 13 13 C 1.53954 * 104.74766 * 214.63580 * 12 11 10 14 14 C 1.54846 * 103.15403 * 37.00437 * 13 12 11 15 15 C 1.54163 * 104.32514 * 322.50491 * 14 13 12 16 16 H 1.08998 * 111.81927 * 146.20607 * 15 14 13 17 17 C 1.54703 * 109.51969 * 270.98365 * 15 14 13 18 18 N 1.48119 * 104.50620 * 137.99507 * 17 15 14 19 19 C 1.34779 * 127.84118 * 140.23287 * 18 17 15 20 20 O 1.21275 * 120.00236 * 179.67777 * 19 18 17 21 21 C 1.50705 * 120.00098 * 359.68034 * 19 18 17 22 22 H 1.08995 * 110.80542 * 56.67751 * 21 19 18 23 23 C 1.56777 * 110.74257 * 292.38223 * 21 19 18 24 24 C 1.55825 * 102.92987 * 241.81815 * 23 21 19 25 25 H 1.08998 * 115.93557 * 158.64917 * 24 23 21 26 26 O 1.46534 * 101.24573 * 32.62689 * 24 23 21 27 27 C 1.46531 * 99.68085 * 305.84656 * 26 24 23 28 28 H 1.09001 * 115.68155 * 180.34225 * 27 26 24 29 29 C 1.55820 * 101.24523 * 305.83612 * 27 26 24 30 30 H 1.09002 * 118.19714 * 171.69666 * 29 27 26 31 31 C 1.52997 * 117.23731 * 328.39448 * 29 27 26 32 32 C 1.55005 * 102.78632 * 32.41787 * 29 27 26 33 33 H 1.08998 * 123.14386 * 135.79846 * 32 29 27 34 34 C 1.48117 * 104.31632 * 319.97318 * 18 17 15 35 35 H 0.97002 * 119.99321 * 0.02562 * 1 2 3 36 36 H 0.97005 * 120.00212 * 359.97438 * 9 7 2 37 37 H 1.09002 * 109.46717 * 59.99900 * 10 9 7 38 38 H 1.08993 * 109.47119 * 300.00094 * 10 9 7 39 39 H 1.08996 * 110.45608 * 332.06268 * 12 11 10 40 40 H 1.08994 * 110.46002 * 94.64052 * 12 11 10 41 41 H 1.09003 * 109.96263 * 278.83166 * 13 12 11 42 42 H 1.09004 * 111.15953 * 155.73593 * 13 12 11 43 43 H 1.09008 * 110.46072 * 203.79954 * 14 13 12 44 44 H 1.08991 * 110.57272 * 81.27220 * 14 13 12 45 45 H 1.09002 * 110.51722 * 19.23678 * 17 15 14 46 46 H 1.08991 * 110.44763 * 256.71866 * 17 15 14 47 47 H 1.08999 * 110.50115 * 123.53319 * 23 21 19 48 48 H 1.09004 * 111.02585 * 0.34519 * 23 21 19 49 49 H 1.09002 * 117.41030 * 198.47685 * 31 29 27 50 50 H 1.08997 * 117.41599 * 343.00034 * 31 29 27 51 51 H 1.08994 * 110.39176 * 158.78984 * 34 18 17 52 52 H 1.09002 * 110.38685 * 281.06586 * 34 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1915 -0.0009 12 6 6.0752 -1.4234 -1.2564 13 6 7.4809 -1.9730 -1.5601 14 6 7.3564 -3.4749 -1.2047 15 6 6.4474 -3.4983 0.0402 16 1 5.8124 -4.3840 0.0616 17 6 7.3143 -3.3753 1.3156 18 7 6.5658 -2.4374 2.1839 19 6 6.3941 -2.5046 3.5190 20 8 5.7536 -1.6489 4.0919 21 6 6.9981 -3.6432 4.3000 22 1 8.0754 -3.6925 4.1421 23 6 6.3008 -4.9989 3.9342 24 6 5.6801 -5.4489 5.2909 25 1 4.8568 -6.1602 5.2258 26 8 5.3558 -4.1560 5.8996 27 6 6.6678 -3.5087 5.8168 28 1 6.7216 -2.4970 6.2188 29 6 7.5707 -4.5597 6.5297 30 1 8.6506 -4.4140 6.5025 31 6 6.9331 -5.3876 7.6472 32 6 6.8871 -5.9024 6.1658 33 1 7.4404 -6.7854 5.8461 34 6 6.0542 -1.4053 1.2528 35 1 -0.4849 0.8401 -0.0004 36 1 3.8647 -0.3622 0.0004 37 1 3.8490 -3.0416 -0.8919 38 1 3.8484 -3.0436 0.8880 39 1 5.4167 -1.6402 -2.0974 40 1 6.1023 -0.3519 -1.0587 41 1 8.2173 -1.4847 -0.9217 42 1 7.7346 -1.8447 -2.6124 43 1 8.3352 -3.8933 -0.9697 44 1 6.8945 -4.0254 -2.0242 45 1 8.2955 -2.9672 1.0727 46 1 7.4152 -4.3452 1.8024 47 1 7.0359 -5.7246 3.5864 48 1 5.5235 -4.8492 3.1848 49 1 7.6035 -5.8880 8.3460 50 1 6.0004 -5.0197 8.0747 51 1 5.2026 -0.8860 1.6922 52 1 6.8427 -0.6957 1.0020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112481052.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:33 Heat of formation + Delta-G solvation = -32.375556 kcal Electronic energy + Delta-G solvation = -32475.244408 eV Core-core repulsion = 28440.419629 eV Total energy + Delta-G solvation = -4034.824778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.57933 -41.54583 -39.56511 -36.68368 -35.69072 -35.07747 -33.78470 -33.20583 -31.32430 -30.62031 -30.34206 -27.74547 -26.63793 -25.57815 -24.76351 -23.78962 -23.14106 -21.44546 -21.08447 -20.97091 -20.29143 -20.18751 -19.31540 -18.19471 -17.82410 -17.23111 -16.93432 -16.69717 -16.53321 -16.16661 -15.56982 -15.48282 -15.23301 -15.02073 -14.96236 -14.67192 -14.28769 -13.95835 -13.79081 -13.62231 -13.61936 -13.40427 -13.23631 -13.05110 -12.84921 -12.81207 -12.50636 -12.31683 -12.25584 -12.14232 -11.99206 -11.85916 -11.81493 -11.67496 -11.54265 -11.47959 -11.41211 -11.18835 -11.05436 -11.01542 -10.69399 -10.61121 -9.75552 -9.36141 -8.10337 -5.42751 1.27080 1.32758 1.38455 1.54696 1.86440 2.40227 2.57093 2.74792 3.19601 3.22591 3.35995 3.43603 3.52307 3.53731 3.62288 3.76257 3.84124 3.89246 3.97013 4.10192 4.14780 4.17762 4.21242 4.23329 4.32750 4.41932 4.46307 4.49275 4.58053 4.64045 4.68913 4.72329 4.78437 4.79902 4.85468 4.85895 4.88580 4.94946 4.96940 5.03150 5.08186 5.14504 5.19381 5.27149 5.31746 5.32072 5.34722 5.47596 5.54626 5.56113 5.67332 6.14133 6.56777 7.00356 7.11958 7.76778 7.95539 9.11688 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.003656 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.523140 B = 7657.740836 C = 9179.287274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.235 4.235 8 H 0.054 0.946 9 N -0.753 5.753 10 C 0.179 3.821 11 C -0.074 4.074 12 C -0.114 4.114 13 C -0.115 4.115 14 C -0.103 4.103 15 C -0.092 4.092 16 H 0.088 0.912 17 C 0.106 3.894 18 N -0.619 5.619 19 C 0.528 3.472 20 O -0.594 6.594 21 C -0.115 4.115 22 H 0.149 0.851 23 C -0.121 4.121 24 C 0.071 3.929 25 H 0.137 0.863 26 O -0.408 6.408 27 C 0.097 3.903 28 H 0.108 0.892 29 C -0.186 4.186 30 H 0.151 0.849 31 C -0.141 4.141 32 C -0.179 4.179 33 H 0.159 0.841 34 C 0.111 3.889 35 H 0.259 0.741 36 H 0.364 0.636 37 H 0.032 0.968 38 H 0.000 1.000 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.133 0.867 48 H 0.059 0.941 49 H 0.130 0.870 50 H 0.073 0.927 51 H 0.036 0.964 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.682 -16.259 5.036 34.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.366 4.366 8 H 0.072 0.928 9 N -0.398 5.398 10 C 0.053 3.947 11 C -0.076 4.076 12 C -0.152 4.152 13 C -0.152 4.152 14 C -0.140 4.140 15 C -0.112 4.112 16 H 0.107 0.893 17 C -0.015 4.015 18 N -0.351 5.351 19 C 0.319 3.681 20 O -0.475 6.475 21 C -0.136 4.136 22 H 0.167 0.833 23 C -0.159 4.159 24 C 0.014 3.986 25 H 0.154 0.846 26 O -0.328 6.328 27 C 0.039 3.961 28 H 0.126 0.874 29 C -0.204 4.204 30 H 0.168 0.832 31 C -0.178 4.178 32 C -0.197 4.197 33 H 0.177 0.823 34 C -0.012 4.012 35 H 0.067 0.933 36 H 0.198 0.802 37 H 0.050 0.950 38 H 0.018 0.982 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.151 0.849 48 H 0.078 0.922 49 H 0.148 0.852 50 H 0.092 0.908 51 H 0.054 0.946 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 28.917 -15.832 5.526 33.427 hybrid contribution -1.077 1.788 0.140 2.092 sum 27.840 -14.043 5.666 31.692 Atomic orbital electron populations 1.69881 1.06995 1.26680 1.59731 1.25470 0.96143 1.01100 1.02605 0.85471 0.78290 0.79919 0.78540 1.19016 1.22125 1.18953 1.19028 0.82838 0.93399 1.41298 0.92829 1.42676 1.02376 1.04100 1.90692 1.20634 0.89995 0.87106 0.97006 1.22217 0.93410 0.97138 0.94806 1.22209 0.98599 0.98750 0.95634 1.22330 0.94716 0.95981 1.02195 1.22326 0.99904 0.96245 0.95544 1.22786 0.96286 0.95904 0.96222 0.89344 1.22962 0.95186 0.94345 0.89006 1.49047 1.52935 1.27748 1.05388 1.20858 0.79466 0.86881 0.80912 1.90726 1.43157 1.43760 1.69830 1.23210 1.03144 0.92901 0.94348 0.83294 1.23463 1.00701 0.94542 0.97155 1.24575 0.96854 0.85610 0.91528 0.84580 1.90182 1.31229 1.29402 1.81957 1.24045 0.81899 0.97200 0.92945 0.87398 1.24297 1.00032 0.92340 1.03732 0.83157 1.23485 1.02235 1.01464 0.90601 1.24999 0.99187 0.98826 0.96649 0.82335 1.22438 0.98251 0.91446 0.89088 0.93255 0.80234 0.95033 0.98215 0.92194 0.92548 0.90620 0.89987 0.87973 0.90833 0.87892 0.87490 0.84930 0.92191 0.85213 0.90839 0.94556 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.59 13.97 21.65 0.30 -66.29 16 2 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.95 49.19 27.74 68.60 1.90 51.09 16 4 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.26 -12.95 6.52 99.48 0.65 -12.30 16 7 C -0.23 -14.48 10.47 84.03 0.88 -13.60 16 8 H 0.05 3.61 8.06 -2.91 -0.02 3.58 16 9 N -0.75 -38.24 4.73 -343.45 -1.62 -39.86 16 10 C 0.18 7.29 5.20 86.38 0.45 7.74 16 11 C -0.07 -2.14 0.64 -50.68 -0.03 -2.17 16 12 C -0.11 -2.87 5.18 31.31 0.16 -2.71 16 13 C -0.11 -1.75 6.81 31.55 0.21 -1.54 16 14 C -0.10 -1.26 6.15 31.62 0.19 -1.07 16 15 C -0.09 -1.70 3.55 -9.16 -0.03 -1.73 16 16 H 0.09 1.68 7.88 -2.39 -0.02 1.66 16 17 C 0.11 1.60 6.26 86.65 0.54 2.14 16 18 N -0.62 -16.64 3.31 -807.61 -2.67 -19.31 16 19 C 0.53 16.67 7.12 87.66 0.62 17.29 16 20 O -0.59 -26.47 16.19 -3.01 -0.05 -26.52 16 21 C -0.12 -2.31 2.31 -9.24 -0.02 -2.33 16 22 H 0.15 1.71 8.03 -2.39 -0.02 1.69 16 23 C -0.12 -2.00 4.70 32.89 0.15 -1.85 16 24 C 0.07 1.39 5.67 32.55 0.18 1.58 16 25 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 26 O -0.41 -12.50 10.80 -148.98 -1.61 -14.11 16 27 C 0.10 2.35 4.48 32.54 0.15 2.49 16 28 H 0.11 3.08 7.80 -2.39 -0.02 3.06 16 29 C -0.19 -2.70 6.49 -9.13 -0.06 -2.76 16 30 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 31 C -0.14 -2.07 10.01 31.96 0.32 -1.75 16 32 C -0.18 -2.26 6.79 -7.76 -0.05 -2.32 16 33 H 0.16 0.96 8.14 -2.39 -0.02 0.95 16 34 C 0.11 3.57 5.77 86.52 0.50 4.07 16 35 H 0.26 16.63 8.31 -92.71 -0.77 15.86 16 36 H 0.36 17.87 4.72 -92.70 -0.44 17.43 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.06 1.68 7.99 -2.39 -0.02 1.67 16 40 H 0.06 1.52 7.74 -2.39 -0.02 1.51 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.10 0.64 7.79 -2.38 -0.02 0.62 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.10 1.02 7.68 -2.39 -0.02 1.00 16 46 H 0.11 1.01 6.14 -2.39 -0.01 1.00 16 47 H 0.13 0.94 7.94 -2.39 -0.02 0.92 16 48 H 0.06 1.32 7.80 -2.38 -0.02 1.30 16 49 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 1.50 7.68 -2.39 -0.02 1.48 16 51 H 0.04 1.58 6.87 -2.39 -0.02 1.57 16 52 H 0.09 2.38 7.62 -2.39 -0.02 2.36 16 Total: -1.00 -90.65 393.89 1.31 -89.34 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.42 Total: 27.60 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.64 Total: -1.94 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -4.00 Total: -125.46 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.66 Total: -40.63 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.90 Total: 51.09 kcal Total: -90.65 1.31 -89.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112481052.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.969 kcal (2) G-P(sol) polarization free energy of solvation -90.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds