Wall clock time and date at job start Sat Apr 11 2020 07:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48498 * 109.47074 * 270.00084 * 3 2 1 5 5 H 1.48494 * 109.46900 * 30.00235 * 3 2 1 6 6 H 1.48499 * 109.46828 * 150.00001 * 3 2 1 7 7 C 1.38811 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00158 * 174.57769 * 9 7 2 11 11 C 1.52995 * 109.47025 * 62.76893 * 10 9 7 12 12 N 1.46508 * 109.47100 * 54.64213 * 11 10 9 13 13 C 1.34775 * 120.00083 * 176.55067 * 12 11 10 14 14 O 1.21280 * 119.99634 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99788 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.46887 * 179.97438 * 15 13 12 17 17 O 1.42904 * 109.47008 * 179.97438 * 16 15 13 18 18 C 1.35900 * 116.99829 * 179.97438 * 17 16 15 19 19 C 1.38733 * 120.05684 * 359.72975 * 18 17 16 20 20 C 1.38141 * 119.94248 * 179.74576 * 19 18 17 21 21 C 1.38268 * 120.05539 * 0.50136 * 20 19 18 22 22 C 1.38261 * 120.11270 * 359.77590 * 21 20 19 23 23 C 1.38145 * 120.05521 * 359.97230 * 22 21 20 24 24 C 1.52998 * 109.46761 * 302.77254 * 10 9 7 25 25 C 1.53005 * 109.47284 * 299.99947 * 24 10 9 26 26 C 1.53002 * 109.46897 * 300.00057 * 25 24 10 27 27 C 1.53003 * 109.47040 * 60.00390 * 26 25 24 28 28 C 1.52999 * 109.46891 * 182.77242 * 10 9 7 29 29 H 0.97002 * 120.00329 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00085 * 354.30130 * 9 7 2 31 31 H 1.09000 * 109.46788 * 174.63535 * 11 10 9 32 32 H 1.08994 * 109.47340 * 294.63635 * 11 10 9 33 33 H 0.97003 * 119.99650 * 356.54407 * 12 11 10 34 34 H 1.08997 * 109.47342 * 299.99605 * 15 13 12 35 35 H 1.09003 * 109.47262 * 60.00244 * 15 13 12 36 36 H 1.08997 * 109.47037 * 300.00074 * 16 15 13 37 37 H 1.09003 * 109.46740 * 60.00206 * 16 15 13 38 38 H 1.08006 * 120.02679 * 359.97438 * 19 18 17 39 39 H 1.08004 * 119.96934 * 180.27786 * 20 19 18 40 40 H 1.08001 * 119.94062 * 179.74308 * 21 20 19 41 41 H 1.08003 * 119.97487 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.02873 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47368 * 60.00265 * 24 10 9 44 44 H 1.09003 * 109.47074 * 180.02562 * 24 10 9 45 45 H 1.08998 * 109.47142 * 180.02562 * 25 24 10 46 46 H 1.08995 * 109.46935 * 59.99800 * 25 24 10 47 47 H 1.08996 * 109.47766 * 300.00305 * 26 25 24 48 48 H 1.09003 * 109.47165 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47132 * 179.97438 * 27 26 25 50 50 H 1.08995 * 109.47785 * 59.99649 * 27 26 25 51 51 H 1.09003 * 109.46897 * 179.97438 * 28 10 9 52 52 H 1.08998 * 109.47225 * 299.99902 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0530 -3.6540 -0.1210 11 6 2.9821 -3.8248 1.0825 12 7 2.2060 -3.7047 2.3194 13 6 2.8058 -3.8903 3.5120 14 8 3.9878 -4.1573 3.5612 15 6 2.0077 -3.7662 4.7842 16 6 2.9198 -4.0229 5.9855 17 8 2.1631 -3.9046 7.1920 18 6 2.8286 -4.1050 8.3598 19 6 4.1809 -4.4147 8.3446 20 6 4.8562 -4.6128 9.5333 21 6 4.1833 -4.5127 10.7371 22 6 2.8344 -4.2098 10.7546 23 6 2.1556 -4.0057 9.5689 24 6 2.8812 -3.6457 -1.4074 25 6 1.9522 -3.4749 -2.6111 26 6 0.9548 -4.6343 -2.6540 27 6 0.1265 -4.6424 -1.3676 28 6 1.0555 -4.8133 -0.1640 29 1 -0.4851 0.8400 0.0004 30 1 0.3591 -2.3902 0.0833 31 1 3.4517 -4.8076 1.0423 32 1 3.7515 -3.0532 1.0600 33 1 1.2606 -3.4914 2.2799 34 1 1.5886 -2.7624 4.8537 35 1 1.1997 -4.4978 4.7791 36 1 3.3386 -5.0268 5.9158 37 1 3.7281 -3.2916 5.9908 38 1 4.7059 -4.4973 7.4044 39 1 5.9099 -4.8495 9.5222 40 1 4.7122 -4.6720 11.6651 41 1 2.3109 -4.1326 11.6962 42 1 1.1019 -3.7696 9.5831 43 1 3.5918 -2.8198 -1.3768 44 1 3.4222 -4.5878 -1.4973 45 1 2.5422 -3.4694 -3.5275 46 1 1.4109 -2.5331 -2.5214 47 1 1.4960 -5.5761 -2.7436 48 1 0.2932 -4.5128 -3.5118 49 1 -0.5844 -5.4682 -1.3984 50 1 -0.4148 -3.7007 -1.2779 51 1 1.5968 -5.7552 -0.2541 52 1 0.4655 -4.8191 0.7525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120125842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:42 Heat of formation + Delta-G solvation = -58.853568 kcal Electronic energy + Delta-G solvation = -30437.887209 eV Core-core repulsion = 26401.914257 eV Total energy + Delta-G solvation = -4035.972951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29553 -39.58283 -38.50659 -37.47552 -34.50160 -33.30884 -32.27750 -31.23103 -30.98484 -30.26249 -29.66422 -28.56648 -25.89674 -24.10833 -23.81691 -22.66095 -22.16599 -21.73507 -20.46452 -19.88805 -18.57447 -18.28764 -17.18370 -16.71050 -16.42052 -16.03787 -15.96457 -15.40995 -15.10511 -14.82406 -14.59758 -14.28268 -14.04340 -13.68499 -13.61531 -13.60932 -13.43210 -13.21164 -12.92364 -12.77671 -12.27793 -11.96230 -11.86977 -11.79735 -11.74755 -11.70657 -11.56860 -11.14973 -10.92649 -10.90152 -10.83401 -10.79848 -10.56590 -10.19887 -10.06629 -9.85471 -9.68436 -9.55135 -9.33966 -9.19422 -8.91519 -8.51090 -8.36249 -7.04570 -5.83858 -3.12894 1.15071 1.27091 2.84783 2.95035 3.39245 3.46459 3.47000 3.61407 3.85649 4.53813 4.59915 4.70250 4.80705 4.91495 4.94657 5.13021 5.17022 5.20014 5.22781 5.23528 5.26590 5.41469 5.50231 5.54297 5.57348 5.69514 5.70416 5.75857 5.80072 5.81665 5.95294 6.01760 6.09348 6.13637 6.14455 6.16598 6.22935 6.27535 6.33789 6.42773 6.46705 6.56501 6.59904 6.76170 6.77849 6.79581 6.94576 7.02828 7.18179 7.28099 7.68042 7.95816 8.34188 8.57775 9.46860 9.99395 10.35976 11.37989 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.002351 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.912585 B =11905.992353 C =13218.632070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.899 3.101 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.230 4.230 8 H 0.068 0.932 9 N -0.709 5.709 10 C 0.190 3.810 11 C 0.115 3.885 12 N -0.696 5.696 13 C 0.515 3.485 14 O -0.561 6.561 15 C -0.141 4.141 16 C 0.078 3.922 17 O -0.317 6.317 18 C 0.136 3.864 19 C -0.208 4.208 20 C -0.081 4.081 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.155 4.155 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.113 4.113 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.405 0.595 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -12.080 11.831 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.361 4.361 8 H 0.086 0.914 9 N -0.352 5.352 10 C 0.098 3.902 11 C -0.011 4.011 12 N -0.345 5.345 13 C 0.300 3.700 14 O -0.441 6.441 15 C -0.181 4.181 16 C 0.002 3.998 17 O -0.231 6.231 18 C 0.090 3.910 19 C -0.227 4.227 20 C -0.099 4.099 21 C -0.182 4.182 22 C -0.102 4.102 23 C -0.174 4.174 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.153 4.153 28 C -0.151 4.151 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.241 0.759 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.077 0.923 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.504 -12.063 11.772 17.215 hybrid contribution -0.014 1.187 -0.144 1.196 sum 3.490 -10.876 11.628 16.299 Atomic orbital electron populations 1.69640 1.04955 1.25613 1.57674 1.24666 0.95381 0.97411 1.02946 0.86310 0.78822 0.84312 0.77486 1.21815 1.21930 1.20873 1.19058 0.90916 0.83768 1.42401 0.91362 1.42448 1.06091 0.99382 1.87231 1.19824 0.91272 0.87581 0.91499 1.21895 0.95021 1.00001 0.84212 1.45738 1.14143 1.69430 1.05215 1.20092 0.87653 0.77185 0.85036 1.90671 1.15977 1.49754 1.87664 1.21460 0.99485 1.05909 0.91269 1.22450 0.93829 1.02481 0.81004 1.85994 1.38757 1.85639 1.12673 1.19037 0.90839 0.95059 0.86078 1.21404 0.93990 1.07391 0.99927 1.20975 0.99709 0.97299 0.91896 1.21052 0.94897 1.04324 0.97955 1.20953 0.94401 0.97539 0.97259 1.20472 1.00786 1.06351 0.89786 1.21787 0.98066 1.00075 0.95484 1.21374 0.97182 0.99759 0.96395 1.21470 0.97907 0.98411 0.97203 1.21474 0.97501 1.01877 0.94462 1.21688 0.97637 0.97714 0.98088 0.93579 0.78039 0.92855 0.91768 0.75899 0.87547 0.88047 0.91157 0.91022 0.85065 0.85850 0.86079 0.85498 0.85197 0.91772 0.93757 0.93791 0.89803 0.93262 0.93037 0.93296 0.90695 0.92308 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.81 13.07 55.49 0.73 -25.09 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -5.65 8.70 -15.06 -0.13 -5.78 16 8 H 0.07 1.71 6.77 -52.49 -0.36 1.35 16 9 N -0.71 -14.83 3.40 -47.23 -0.16 -14.99 16 10 C 0.19 3.25 0.41 -131.82 -0.05 3.19 16 11 C 0.11 1.99 4.37 -4.04 -0.02 1.97 16 12 N -0.70 -11.28 5.09 -60.30 -0.31 -11.58 16 13 C 0.51 8.28 7.83 -10.99 -0.09 8.19 16 14 O -0.56 -10.68 15.98 5.56 0.09 -10.59 16 15 C -0.14 -1.79 6.07 -27.88 -0.17 -1.96 16 16 C 0.08 0.99 4.03 37.16 0.15 1.14 16 17 O -0.32 -4.15 10.14 -19.43 -0.20 -4.35 16 18 C 0.14 1.67 6.69 -39.22 -0.26 1.41 16 19 C -0.21 -2.39 9.04 -39.43 -0.36 -2.74 16 20 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 21 C -0.16 -1.46 10.04 -39.56 -0.40 -1.86 16 22 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 23 C -0.16 -1.67 9.99 -39.43 -0.39 -2.06 16 24 C -0.11 -1.92 4.52 -26.73 -0.12 -2.04 16 25 C -0.11 -1.81 5.77 -26.73 -0.15 -1.97 16 26 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 27 C -0.12 -1.69 5.75 -26.73 -0.15 -1.85 16 28 C -0.11 -1.66 4.65 -26.73 -0.12 -1.78 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.38 8.67 6.64 -40.82 -0.27 8.40 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.28 7.51 -51.93 -0.39 0.89 16 33 H 0.41 6.35 7.39 -40.82 -0.30 6.05 16 34 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.88 7.61 -51.93 -0.39 0.48 16 37 H 0.07 0.96 7.63 -51.93 -0.40 0.57 16 38 H 0.13 1.46 6.30 -52.48 -0.33 1.13 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.06 1.19 7.23 -51.93 -0.38 0.81 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 1.68 7.60 -51.93 -0.39 1.29 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 1.28 6.92 -51.93 -0.36 0.92 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.06 0.81 7.28 -51.93 -0.38 0.43 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -28.91 410.60 -10.59 -39.49 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -8.58 Total: 14.88 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.32 Total: -10.54 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.26 Total: -51.66 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.11 Total: -14.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -28.91 -10.59 -39.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120125842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.359 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds