Wall clock time and date at job start Sat Apr 11 2020 07:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48498 * 109.47074 * 270.00084 * 3 2 1 5 5 H 1.48494 * 109.46900 * 30.00235 * 3 2 1 6 6 H 1.48499 * 109.46828 * 150.00001 * 3 2 1 7 7 C 1.38811 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00158 * 174.57769 * 9 7 2 11 11 C 1.52995 * 109.47025 * 62.76893 * 10 9 7 12 12 N 1.46508 * 109.47100 * 54.64213 * 11 10 9 13 13 C 1.34775 * 120.00083 * 176.55067 * 12 11 10 14 14 O 1.21280 * 119.99634 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99788 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.46887 * 179.97438 * 15 13 12 17 17 O 1.42904 * 109.47008 * 179.97438 * 16 15 13 18 18 C 1.35900 * 116.99829 * 179.97438 * 17 16 15 19 19 C 1.38733 * 120.05684 * 359.72975 * 18 17 16 20 20 C 1.38141 * 119.94248 * 179.74576 * 19 18 17 21 21 C 1.38268 * 120.05539 * 0.50136 * 20 19 18 22 22 C 1.38261 * 120.11270 * 359.77590 * 21 20 19 23 23 C 1.38145 * 120.05521 * 359.97230 * 22 21 20 24 24 C 1.52998 * 109.46761 * 302.77254 * 10 9 7 25 25 C 1.53005 * 109.47284 * 299.99947 * 24 10 9 26 26 C 1.53002 * 109.46897 * 300.00057 * 25 24 10 27 27 C 1.53003 * 109.47040 * 60.00390 * 26 25 24 28 28 C 1.52999 * 109.46891 * 182.77242 * 10 9 7 29 29 H 0.97002 * 120.00329 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00085 * 354.30130 * 9 7 2 31 31 H 1.09000 * 109.46788 * 174.63535 * 11 10 9 32 32 H 1.08994 * 109.47340 * 294.63635 * 11 10 9 33 33 H 0.97003 * 119.99650 * 356.54407 * 12 11 10 34 34 H 1.08997 * 109.47342 * 299.99605 * 15 13 12 35 35 H 1.09003 * 109.47262 * 60.00244 * 15 13 12 36 36 H 1.08997 * 109.47037 * 300.00074 * 16 15 13 37 37 H 1.09003 * 109.46740 * 60.00206 * 16 15 13 38 38 H 1.08006 * 120.02679 * 359.97438 * 19 18 17 39 39 H 1.08004 * 119.96934 * 180.27786 * 20 19 18 40 40 H 1.08001 * 119.94062 * 179.74308 * 21 20 19 41 41 H 1.08003 * 119.97487 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.02873 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47368 * 60.00265 * 24 10 9 44 44 H 1.09003 * 109.47074 * 180.02562 * 24 10 9 45 45 H 1.08998 * 109.47142 * 180.02562 * 25 24 10 46 46 H 1.08995 * 109.46935 * 59.99800 * 25 24 10 47 47 H 1.08996 * 109.47766 * 300.00305 * 26 25 24 48 48 H 1.09003 * 109.47165 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47132 * 179.97438 * 27 26 25 50 50 H 1.08995 * 109.47785 * 59.99649 * 27 26 25 51 51 H 1.09003 * 109.46897 * 179.97438 * 28 10 9 52 52 H 1.08998 * 109.47225 * 299.99902 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0530 -3.6540 -0.1210 11 6 2.9821 -3.8248 1.0825 12 7 2.2060 -3.7047 2.3194 13 6 2.8058 -3.8903 3.5120 14 8 3.9878 -4.1573 3.5612 15 6 2.0077 -3.7662 4.7842 16 6 2.9198 -4.0229 5.9855 17 8 2.1631 -3.9046 7.1920 18 6 2.8286 -4.1050 8.3598 19 6 4.1809 -4.4147 8.3446 20 6 4.8562 -4.6128 9.5333 21 6 4.1833 -4.5127 10.7371 22 6 2.8344 -4.2098 10.7546 23 6 2.1556 -4.0057 9.5689 24 6 2.8812 -3.6457 -1.4074 25 6 1.9522 -3.4749 -2.6111 26 6 0.9548 -4.6343 -2.6540 27 6 0.1265 -4.6424 -1.3676 28 6 1.0555 -4.8133 -0.1640 29 1 -0.4851 0.8400 0.0004 30 1 0.3591 -2.3902 0.0833 31 1 3.4517 -4.8076 1.0423 32 1 3.7515 -3.0532 1.0600 33 1 1.2606 -3.4914 2.2799 34 1 1.5886 -2.7624 4.8537 35 1 1.1997 -4.4978 4.7791 36 1 3.3386 -5.0268 5.9158 37 1 3.7281 -3.2916 5.9908 38 1 4.7059 -4.4973 7.4044 39 1 5.9099 -4.8495 9.5222 40 1 4.7122 -4.6720 11.6651 41 1 2.3109 -4.1326 11.6962 42 1 1.1019 -3.7696 9.5831 43 1 3.5918 -2.8198 -1.3768 44 1 3.4222 -4.5878 -1.4973 45 1 2.5422 -3.4694 -3.5275 46 1 1.4109 -2.5331 -2.5214 47 1 1.4960 -5.5761 -2.7436 48 1 0.2932 -4.5128 -3.5118 49 1 -0.5844 -5.4682 -1.3984 50 1 -0.4148 -3.7007 -1.2779 51 1 1.5968 -5.7552 -0.2541 52 1 0.4655 -4.8191 0.7525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120125842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:59:41 Heat of formation + Delta-G solvation = -74.311765 kcal Electronic energy + Delta-G solvation = -30438.557526 eV Core-core repulsion = 26401.914257 eV Total energy + Delta-G solvation = -4036.643269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27971 -40.82896 -39.83467 -38.34719 -35.89100 -35.05273 -33.41680 -32.64636 -31.86142 -31.54450 -30.59093 -30.13107 -27.13432 -25.70636 -25.17973 -23.53038 -23.36757 -22.64564 -21.74929 -21.18336 -19.81857 -19.42137 -19.00477 -17.85228 -17.47145 -17.14704 -16.85966 -16.73152 -16.41251 -16.13002 -15.89691 -15.59848 -15.36067 -15.12097 -14.91977 -14.48576 -14.40655 -14.33170 -14.24925 -14.09825 -13.49591 -13.39787 -13.24805 -12.92136 -12.88550 -12.82680 -12.73210 -12.58831 -12.49706 -12.48094 -12.05678 -11.87450 -11.80485 -11.73814 -11.67288 -11.30985 -11.11145 -10.99833 -10.69900 -10.68584 -9.96001 -9.91395 -9.19426 -8.90160 -7.87526 -5.11560 0.38570 0.48093 1.44119 1.47536 1.52134 1.62977 1.83415 2.57285 2.68431 2.84270 3.45562 3.62097 3.82192 3.89063 3.91004 3.94075 3.95702 4.02207 4.07861 4.15100 4.25448 4.34215 4.40939 4.47212 4.49227 4.52427 4.66880 4.68061 4.70463 4.77109 4.78528 4.81498 4.82760 4.92233 4.97794 5.08296 5.08736 5.18873 5.23101 5.36571 5.45908 5.48492 5.50243 5.51916 5.58145 5.59639 5.62007 5.69582 5.81815 5.85610 6.35553 6.38870 6.63529 7.26408 7.44662 8.17659 8.43679 9.34783 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.002351 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.912585 B =11905.992353 C =13218.632070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.063 4.063 3 Si 0.944 3.056 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.282 1.282 7 C -0.204 4.204 8 H 0.061 0.939 9 N -0.708 5.708 10 C 0.188 3.812 11 C 0.122 3.878 12 N -0.694 5.694 13 C 0.514 3.486 14 O -0.592 6.592 15 C -0.131 4.131 16 C 0.085 3.915 17 O -0.326 6.326 18 C 0.106 3.894 19 C -0.225 4.225 20 C -0.089 4.089 21 C -0.162 4.162 22 C -0.082 4.082 23 C -0.167 4.167 24 C -0.114 4.114 25 C -0.106 4.106 26 C -0.108 4.108 27 C -0.113 4.113 28 C -0.107 4.107 29 H 0.246 0.754 30 H 0.378 0.622 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.409 0.591 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.125 0.875 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.138 0.862 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.083 0.917 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -14.334 13.046 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.777 3.223 4 H -0.222 1.222 5 H -0.227 1.227 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.349 5.349 10 C 0.098 3.902 11 C -0.005 4.005 12 N -0.344 5.344 13 C 0.301 3.699 14 O -0.474 6.474 15 C -0.171 4.171 16 C 0.009 3.991 17 O -0.241 6.241 18 C 0.061 3.939 19 C -0.244 4.244 20 C -0.106 4.106 21 C -0.180 4.180 22 C -0.100 4.100 23 C -0.186 4.186 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.055 0.945 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.246 0.754 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.156 0.844 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.101 0.899 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.694 -14.343 12.989 19.700 hybrid contribution 0.036 1.800 -0.464 1.859 sum 3.730 -12.543 12.525 18.114 Atomic orbital electron populations 1.69742 1.05746 1.25256 1.60319 1.25136 0.95953 0.99529 1.04959 0.85570 0.77768 0.82045 0.76949 1.22199 1.22736 1.20815 1.19169 0.90615 0.84986 1.38910 0.92109 1.42474 1.05737 0.99887 1.86812 1.20040 0.91788 0.86910 0.91487 1.21746 0.94395 0.99602 0.84718 1.45739 1.14198 1.69355 1.05103 1.20608 0.87411 0.76092 0.85801 1.90655 1.17488 1.51138 1.88128 1.21393 0.99480 1.06889 0.89346 1.22294 0.93468 1.02021 0.81289 1.85951 1.38995 1.86187 1.12924 1.19362 0.91533 0.96801 0.86223 1.21505 0.93986 1.08300 1.00571 1.21293 1.00785 0.96875 0.91695 1.21454 0.95038 1.02812 0.98696 1.21350 0.94678 0.96201 0.97778 1.20747 1.01424 1.06521 0.89875 1.21777 0.97719 1.00510 0.95329 1.21303 0.97460 0.98850 0.96801 1.21449 0.97498 0.98233 0.97326 1.21439 0.97769 1.01259 0.94580 1.21663 0.97119 0.97160 0.98559 0.94475 0.78859 0.91412 0.94997 0.75447 0.87215 0.85444 0.91193 0.92401 0.85689 0.83948 0.83259 0.82568 0.84447 0.94341 0.90926 0.92577 0.94099 0.90786 0.92361 0.90727 0.93814 0.89873 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.59 13.07 21.65 0.28 -54.30 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 3 Si 0.94 45.53 29.55 68.60 2.03 47.56 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.20 -10.22 8.70 84.03 0.73 -9.49 16 8 H 0.06 3.12 6.77 -2.91 -0.02 3.10 16 9 N -0.71 -29.91 3.40 -303.35 -1.03 -30.94 16 10 C 0.19 6.26 0.41 3.60 0.00 6.26 16 11 C 0.12 4.15 4.37 86.38 0.38 4.52 16 12 N -0.69 -22.08 5.09 -463.07 -2.36 -24.44 16 13 C 0.51 16.32 7.83 87.66 0.69 17.01 16 14 O -0.59 -22.64 15.98 -3.03 -0.05 -22.69 16 15 C -0.13 -3.25 6.07 29.85 0.18 -3.07 16 16 C 0.08 2.19 4.03 71.98 0.29 2.48 16 17 O -0.33 -8.58 10.14 -92.43 -0.94 -9.52 16 18 C 0.11 2.60 6.69 22.51 0.15 2.75 16 19 C -0.22 -5.15 9.04 22.37 0.20 -4.95 16 20 C -0.09 -1.61 10.04 22.25 0.22 -1.39 16 21 C -0.16 -2.49 10.04 22.28 0.22 -2.27 16 22 C -0.08 -1.30 10.04 22.25 0.22 -1.08 16 23 C -0.17 -3.42 9.99 22.37 0.22 -3.20 16 24 C -0.11 -3.70 4.52 30.60 0.14 -3.56 16 25 C -0.11 -3.42 5.77 30.60 0.18 -3.24 16 26 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 27 C -0.11 -3.05 5.75 30.60 0.18 -2.88 16 28 C -0.11 -2.86 4.65 30.60 0.14 -2.72 16 29 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.38 17.27 6.64 -92.70 -0.62 16.65 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.03 1.29 7.51 -2.39 -0.02 1.27 16 33 H 0.41 12.48 7.39 -92.71 -0.69 11.80 16 34 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.07 1.78 7.61 -2.39 -0.02 1.76 16 37 H 0.06 1.62 7.63 -2.39 -0.02 1.60 16 38 H 0.13 2.89 6.30 -2.91 -0.02 2.87 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 43 H 0.04 1.43 7.23 -2.39 -0.02 1.41 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.04 1.66 7.60 -2.39 -0.02 1.64 16 47 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.04 1.47 6.92 -2.39 -0.02 1.45 16 51 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.06 1.64 7.28 -2.39 -0.02 1.63 16 Total: -1.00 -64.29 410.60 2.35 -61.94 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -0.38 Total: 42.76 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.79 Total: -10.37 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.11 Total: -109.69 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.99 Total: -32.21 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -64.29 2.35 -61.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120125842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.369 kcal (2) G-P(sol) polarization free energy of solvation -64.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds