Wall clock time and date at job start Sat Apr 11 2020 07:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46940 * 299.99920 * 3 2 1 6 6 H 1.48498 * 109.47254 * 60.00085 * 3 2 1 7 7 C 1.38810 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00288 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47008 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47078 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.47384 * 180.02562 * 12 11 10 14 14 C 1.46499 * 119.99503 * 269.99964 * 13 12 11 15 15 C 1.50706 * 109.46932 * 275.31767 * 14 13 12 16 16 C 1.38240 * 119.99848 * 264.48787 * 15 14 13 17 17 C 1.38236 * 119.99684 * 179.78613 * 16 15 14 18 18 C 1.38238 * 120.00075 * 0.44600 * 17 16 15 19 19 C 1.38238 * 119.99714 * 359.80587 * 18 17 16 20 20 C 1.38225 * 120.00035 * 359.97438 * 19 18 17 21 21 C 1.34778 * 120.00179 * 89.99596 * 13 12 11 22 22 O 1.21276 * 120.00001 * 5.30072 * 21 13 12 23 23 C 1.50701 * 119.99592 * 185.30432 * 21 13 12 24 24 C 1.53002 * 109.46434 * 174.86684 * 23 21 13 25 25 H 1.08998 * 110.33359 * 52.75644 * 24 23 21 26 26 C 1.54485 * 110.36844 * 174.99653 * 24 23 21 27 27 C 1.54514 * 104.06099 * 142.81125 * 26 24 23 28 28 C 1.54478 * 104.06250 * 0.02562 * 27 26 24 29 29 O 1.44425 * 104.90230 * 335.96565 * 28 27 26 30 30 H 0.96997 * 119.99493 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99690 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46826 * 59.99689 * 10 9 7 33 33 H 1.08998 * 109.46680 * 299.99882 * 10 9 7 34 34 H 1.08997 * 109.47591 * 59.99792 * 11 10 9 35 35 H 1.09007 * 109.46962 * 299.99655 * 11 10 9 36 36 H 1.08997 * 109.47249 * 59.99375 * 12 11 10 37 37 H 1.09007 * 109.46773 * 299.99564 * 12 11 10 38 38 H 1.08993 * 109.47655 * 35.31826 * 14 13 12 39 39 H 1.09007 * 109.47106 * 155.32230 * 14 13 12 40 40 H 1.07995 * 120.00171 * 0.02562 * 16 15 14 41 41 H 1.08000 * 119.99717 * 180.27461 * 17 16 15 42 42 H 1.08001 * 119.99985 * 179.83784 * 18 17 16 43 43 H 1.07995 * 119.99356 * 180.02562 * 19 18 17 44 44 H 1.08006 * 119.99575 * 179.97438 * 20 19 18 45 45 H 1.08999 * 109.47204 * 54.87231 * 23 21 13 46 46 H 1.08994 * 109.47263 * 294.86560 * 23 21 13 47 47 H 1.08996 * 110.50814 * 24.17243 * 26 24 23 48 48 H 1.09000 * 110.62852 * 261.51376 * 26 24 23 49 49 H 1.08997 * 110.50854 * 241.35927 * 27 26 24 50 50 H 1.08998 * 110.62644 * 118.70518 * 27 26 24 51 51 H 1.09001 * 110.37358 * 94.85012 * 28 27 26 52 52 H 1.08996 * 110.37295 * 217.07782 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 6 1.8286 -6.1447 -0.0016 13 7 0.8766 -7.2583 -0.0028 14 6 0.3993 -7.8151 1.2653 15 6 1.3850 -8.8388 1.7671 16 6 1.1875 -10.1797 1.4953 17 6 2.0940 -11.1182 1.9518 18 6 3.1930 -10.7167 2.6880 19 6 3.3876 -9.3762 2.9642 20 6 2.4836 -8.4374 2.5038 21 6 0.4399 -7.7703 -1.1706 22 8 0.9062 -7.3752 -2.2181 23 6 -0.6280 -8.8336 -1.1746 24 6 -1.0300 -9.1470 -2.6172 25 1 -0.1485 -9.3824 -3.2135 26 6 -2.0326 -10.3218 -2.6529 27 6 -3.0116 -9.9456 -3.7875 28 6 -2.4843 -8.5883 -4.3036 29 8 -1.7464 -8.0306 -3.1944 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6840 -3.7150 0.8888 33 1 2.6853 -3.7142 -0.8911 34 1 0.4373 -4.7618 -0.8924 35 1 0.4367 -4.7621 0.8876 36 1 2.4547 -6.2024 0.8888 37 1 2.4559 -6.2025 -0.8912 38 1 0.3007 -7.0154 1.9992 39 1 -0.5703 -8.2891 1.1120 40 1 0.3271 -10.4937 0.9231 41 1 1.9421 -12.1654 1.7357 42 1 3.8999 -11.4502 3.0469 43 1 4.2464 -9.0625 3.5389 44 1 2.6355 -7.3901 2.7200 45 1 -1.4984 -8.4765 -0.6242 46 1 -0.2435 -9.7365 -0.7003 47 1 -2.5614 -10.4015 -1.7031 48 1 -1.5211 -11.2562 -2.8839 49 1 -4.0242 -9.8394 -3.3986 50 1 -2.9846 -10.6921 -4.5812 51 1 -1.8268 -8.7375 -5.1600 52 1 -3.3150 -7.9361 -4.5729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331080591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:09 Heat of formation + Delta-G solvation = -49.724311 kcal Electronic energy + Delta-G solvation = -30422.058108 eV Core-core repulsion = 26386.481031 eV Total energy + Delta-G solvation = -4035.577077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.49392 -39.50357 -38.80991 -36.15417 -34.92733 -32.95245 -32.37279 -31.79021 -31.34937 -31.13799 -29.53557 -27.06716 -26.47983 -24.85955 -23.08434 -22.70754 -22.13785 -21.81172 -21.19121 -20.81463 -19.06479 -17.41756 -17.17496 -16.88460 -16.59188 -16.17895 -15.92573 -15.65245 -15.43608 -15.15175 -14.76446 -14.48281 -14.36897 -13.97406 -13.72639 -13.62863 -13.39525 -13.25554 -13.06929 -12.75984 -12.56099 -12.46205 -12.24343 -12.01179 -11.94062 -11.78355 -11.49841 -11.44539 -11.33116 -11.21165 -10.89461 -10.86510 -10.81099 -10.67025 -10.31185 -9.99832 -9.85585 -9.71419 -9.61749 -9.18227 -9.08049 -8.80630 -8.61652 -6.84244 -5.69399 -2.97782 1.02081 1.13922 2.69884 2.97293 3.48114 3.53302 3.55936 3.59078 3.70263 4.28094 4.32911 4.47260 4.51101 4.61119 4.65416 4.66920 4.72283 4.77586 4.84803 4.88027 5.00153 5.13912 5.18513 5.21844 5.24241 5.34064 5.38497 5.43132 5.44135 5.51876 5.55110 5.62130 5.63649 5.71387 5.73981 5.75766 5.78955 5.82469 6.00135 6.17164 6.17962 6.25026 6.30369 6.38136 6.47049 6.61746 6.71635 6.72363 6.94621 6.97125 7.40219 7.76912 8.25672 8.49645 9.60420 10.19671 10.54371 11.53821 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007481 B = 0.002863 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3741.983730 B = 9778.024995 C =13065.512187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.120 3.880 13 N -0.608 5.608 14 C 0.144 3.856 15 C -0.104 4.104 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.102 4.102 21 C 0.517 3.483 22 O -0.522 6.522 23 C -0.139 4.139 24 C 0.089 3.911 25 H 0.078 0.922 26 C -0.152 4.152 27 C -0.155 4.155 28 C 0.043 3.957 29 O -0.357 6.357 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -30.838 2.171 31.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.177 4.177 12 C -0.003 4.003 13 N -0.340 5.340 14 C 0.021 3.979 15 C -0.105 4.105 16 C -0.130 4.130 17 C -0.140 4.140 18 C -0.138 4.138 19 C -0.137 4.137 20 C -0.120 4.120 21 C 0.305 3.695 22 O -0.397 6.397 23 C -0.179 4.179 24 C 0.031 3.969 25 H 0.096 0.904 26 C -0.190 4.190 27 C -0.193 4.193 28 C -0.034 4.034 29 O -0.276 6.276 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.077 0.923 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.072 -30.260 1.655 30.376 hybrid contribution 0.110 0.686 0.077 0.699 sum -1.962 -29.574 1.732 29.690 Atomic orbital electron populations 1.69680 1.05111 1.25429 1.58075 1.24751 0.95542 0.97693 1.03235 0.86108 0.78772 0.84143 0.77146 1.20560 1.21881 1.21909 1.19295 0.91063 0.84193 1.42217 0.91138 1.42368 1.05911 1.00026 1.89429 1.20529 0.93396 0.85482 0.97691 1.22056 0.99500 0.93724 1.02455 1.21464 0.91072 0.84669 1.03067 1.47969 1.46379 1.34619 1.05075 1.20518 0.95350 0.95579 0.86428 1.20298 0.97233 0.94506 0.98457 1.21073 0.99491 0.92563 0.99849 1.21126 0.94921 0.99422 0.98510 1.21182 0.97771 0.96104 0.98719 1.21195 0.99293 0.93218 0.99968 1.21156 0.93858 0.99927 0.97090 1.20441 0.82869 0.82788 0.83389 1.90735 1.57358 1.60706 1.30930 1.21897 0.99029 0.99174 0.97779 1.22756 0.95113 0.85827 0.93198 0.90429 1.23009 0.97381 0.98753 0.99817 1.22936 0.99964 0.97963 0.98416 1.23380 0.95741 0.94020 0.90296 1.89321 1.62574 1.30314 1.45388 0.93625 0.78305 0.96504 0.96261 0.91502 0.92042 0.90796 0.89766 0.88980 0.89302 0.86206 0.86123 0.86196 0.85933 0.85662 0.88021 0.87840 0.90489 0.90406 0.90660 0.90630 0.92321 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.38 13.06 55.49 0.72 -28.65 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.85 5.60 -59.91 -0.34 -20.18 16 10 C 0.16 3.38 6.26 -4.04 -0.03 3.36 16 11 C -0.14 -2.46 5.65 -26.73 -0.15 -2.61 16 12 C 0.12 1.74 5.47 -4.04 -0.02 1.72 16 13 N -0.61 -7.63 2.46 -175.05 -0.43 -8.06 16 14 C 0.14 1.33 5.51 -5.19 -0.03 1.30 16 15 C -0.10 -0.93 5.46 -104.62 -0.57 -1.50 16 16 C -0.11 -0.87 9.43 -39.58 -0.37 -1.25 16 17 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 18 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 19 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 20 C -0.10 -0.94 9.30 -39.59 -0.37 -1.31 16 21 C 0.52 7.26 7.57 -10.98 -0.08 7.18 16 22 O -0.52 -9.69 15.23 3.43 0.05 -9.64 16 23 C -0.14 -1.36 3.81 -27.88 -0.11 -1.46 16 24 C 0.09 0.95 2.75 -25.95 -0.07 0.88 16 25 H 0.08 0.91 7.83 -51.93 -0.41 0.51 16 26 C -0.15 -1.08 6.63 -25.16 -0.17 -1.24 16 27 C -0.15 -1.11 7.09 -25.16 -0.18 -1.29 16 28 C 0.04 0.42 7.62 37.93 0.29 0.71 16 29 O -0.36 -4.94 11.05 -37.37 -0.41 -5.36 16 30 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.38 10.91 7.67 -40.82 -0.31 10.60 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.07 0.93 6.95 -51.93 -0.36 0.56 16 37 H 0.08 1.37 7.35 -51.92 -0.38 0.99 16 38 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 39 H 0.09 0.63 6.04 -51.92 -0.31 0.32 16 40 H 0.12 0.69 6.24 -52.49 -0.33 0.36 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.13 1.11 7.39 -52.48 -0.39 0.72 16 45 H 0.10 0.88 7.36 -51.93 -0.38 0.50 16 46 H 0.10 0.71 6.02 -51.93 -0.31 0.39 16 47 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 418.86 15.07 6.31 6.31 Total: -1.00 -36.89 418.86 -11.04 -47.94 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.63 Total: 6.74 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -3.30 Total: -7.25 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.04 Total: -56.90 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.36 Total: -14.99 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.89 -11.04 -47.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331080591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.788 kcal (2) G-P(sol) polarization free energy of solvation -36.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds