Wall clock time and date at job start Sat Apr 11 2020 07:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46940 * 299.99920 * 3 2 1 6 6 H 1.48498 * 109.47254 * 60.00085 * 3 2 1 7 7 C 1.38810 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00288 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47008 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47078 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.47384 * 180.02562 * 12 11 10 14 14 C 1.46499 * 119.99503 * 269.99964 * 13 12 11 15 15 C 1.50706 * 109.46932 * 275.31767 * 14 13 12 16 16 C 1.38240 * 119.99848 * 264.48787 * 15 14 13 17 17 C 1.38236 * 119.99684 * 179.78613 * 16 15 14 18 18 C 1.38238 * 120.00075 * 0.44600 * 17 16 15 19 19 C 1.38238 * 119.99714 * 359.80587 * 18 17 16 20 20 C 1.38225 * 120.00035 * 359.97438 * 19 18 17 21 21 C 1.34778 * 120.00179 * 89.99596 * 13 12 11 22 22 O 1.21276 * 120.00001 * 5.30072 * 21 13 12 23 23 C 1.50701 * 119.99592 * 185.30432 * 21 13 12 24 24 C 1.53002 * 109.46434 * 174.86684 * 23 21 13 25 25 H 1.08998 * 110.33359 * 52.75644 * 24 23 21 26 26 C 1.54485 * 110.36844 * 174.99653 * 24 23 21 27 27 C 1.54514 * 104.06099 * 142.81125 * 26 24 23 28 28 C 1.54478 * 104.06250 * 0.02562 * 27 26 24 29 29 O 1.44425 * 104.90230 * 335.96565 * 28 27 26 30 30 H 0.96997 * 119.99493 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99690 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46826 * 59.99689 * 10 9 7 33 33 H 1.08998 * 109.46680 * 299.99882 * 10 9 7 34 34 H 1.08997 * 109.47591 * 59.99792 * 11 10 9 35 35 H 1.09007 * 109.46962 * 299.99655 * 11 10 9 36 36 H 1.08997 * 109.47249 * 59.99375 * 12 11 10 37 37 H 1.09007 * 109.46773 * 299.99564 * 12 11 10 38 38 H 1.08993 * 109.47655 * 35.31826 * 14 13 12 39 39 H 1.09007 * 109.47106 * 155.32230 * 14 13 12 40 40 H 1.07995 * 120.00171 * 0.02562 * 16 15 14 41 41 H 1.08000 * 119.99717 * 180.27461 * 17 16 15 42 42 H 1.08001 * 119.99985 * 179.83784 * 18 17 16 43 43 H 1.07995 * 119.99356 * 180.02562 * 19 18 17 44 44 H 1.08006 * 119.99575 * 179.97438 * 20 19 18 45 45 H 1.08999 * 109.47204 * 54.87231 * 23 21 13 46 46 H 1.08994 * 109.47263 * 294.86560 * 23 21 13 47 47 H 1.08996 * 110.50814 * 24.17243 * 26 24 23 48 48 H 1.09000 * 110.62852 * 261.51376 * 26 24 23 49 49 H 1.08997 * 110.50854 * 241.35927 * 27 26 24 50 50 H 1.08998 * 110.62644 * 118.70518 * 27 26 24 51 51 H 1.09001 * 110.37358 * 94.85012 * 28 27 26 52 52 H 1.08996 * 110.37295 * 217.07782 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 6 1.8286 -6.1447 -0.0016 13 7 0.8766 -7.2583 -0.0028 14 6 0.3993 -7.8151 1.2653 15 6 1.3850 -8.8388 1.7671 16 6 1.1875 -10.1797 1.4953 17 6 2.0940 -11.1182 1.9518 18 6 3.1930 -10.7167 2.6880 19 6 3.3876 -9.3762 2.9642 20 6 2.4836 -8.4374 2.5038 21 6 0.4399 -7.7703 -1.1706 22 8 0.9062 -7.3752 -2.2181 23 6 -0.6280 -8.8336 -1.1746 24 6 -1.0300 -9.1470 -2.6172 25 1 -0.1485 -9.3824 -3.2135 26 6 -2.0326 -10.3218 -2.6529 27 6 -3.0116 -9.9456 -3.7875 28 6 -2.4843 -8.5883 -4.3036 29 8 -1.7464 -8.0306 -3.1944 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6840 -3.7150 0.8888 33 1 2.6853 -3.7142 -0.8911 34 1 0.4373 -4.7618 -0.8924 35 1 0.4367 -4.7621 0.8876 36 1 2.4547 -6.2024 0.8888 37 1 2.4559 -6.2025 -0.8912 38 1 0.3007 -7.0154 1.9992 39 1 -0.5703 -8.2891 1.1120 40 1 0.3271 -10.4937 0.9231 41 1 1.9421 -12.1654 1.7357 42 1 3.8999 -11.4502 3.0469 43 1 4.2464 -9.0625 3.5389 44 1 2.6355 -7.3901 2.7200 45 1 -1.4984 -8.4765 -0.6242 46 1 -0.2435 -9.7365 -0.7003 47 1 -2.5614 -10.4015 -1.7031 48 1 -1.5211 -11.2562 -2.8839 49 1 -4.0242 -9.8394 -3.3986 50 1 -2.9846 -10.6921 -4.5812 51 1 -1.8268 -8.7375 -5.1600 52 1 -3.3150 -7.9361 -4.5729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331080591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:08 Heat of formation + Delta-G solvation = -72.508288 kcal Electronic energy + Delta-G solvation = -30423.046095 eV Core-core repulsion = 26386.481031 eV Total energy + Delta-G solvation = -4036.565064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42825 -40.20278 -39.64081 -37.53812 -36.51617 -34.42207 -33.34809 -32.70821 -32.42800 -31.71970 -31.11919 -28.10112 -27.38190 -26.32631 -24.60768 -23.42418 -23.11714 -22.52606 -22.40868 -21.83308 -20.04714 -19.17526 -18.31634 -17.74598 -17.59655 -17.00346 -16.75729 -16.66356 -16.37862 -16.11159 -15.91891 -15.81678 -15.64566 -15.29192 -15.10024 -14.65109 -14.43395 -14.29233 -14.08432 -13.62118 -13.55670 -13.44424 -13.25686 -13.11012 -12.93155 -12.81703 -12.72060 -12.59424 -12.41298 -12.21965 -12.09947 -12.05241 -12.03981 -11.88569 -11.82146 -11.73294 -11.44315 -10.98218 -10.80162 -10.70729 -9.80425 -9.76391 -9.62047 -9.05251 -7.98065 -5.28479 0.40149 0.55225 1.44930 1.47198 1.57360 1.64538 2.02492 2.54159 2.95231 2.98669 3.35218 3.54240 3.63223 3.78556 3.83026 3.89090 3.92766 4.01440 4.05223 4.15002 4.17949 4.20099 4.27433 4.29470 4.33370 4.49569 4.50068 4.56186 4.57443 4.64065 4.66579 4.73086 4.78423 4.81712 4.85271 4.86171 4.92262 4.98004 5.13042 5.15050 5.19789 5.23172 5.26362 5.27024 5.45755 5.48772 5.60614 5.67698 5.71821 5.96342 6.15356 6.23907 6.39927 7.20380 7.29272 8.03704 8.28028 9.26067 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007481 B = 0.002863 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3741.983730 B = 9778.024995 C =13065.512187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.749 5.749 10 C 0.156 3.844 11 C -0.119 4.119 12 C 0.130 3.870 13 N -0.604 5.604 14 C 0.142 3.858 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.133 4.133 20 C -0.120 4.120 21 C 0.507 3.493 22 O -0.580 6.580 23 C -0.130 4.130 24 C 0.080 3.920 25 H 0.056 0.944 26 C -0.142 4.142 27 C -0.148 4.148 28 C 0.031 3.969 29 O -0.401 6.401 30 H 0.252 0.748 31 H 0.372 0.628 32 H 0.034 0.966 33 H 0.011 0.989 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.140 0.860 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.053 0.947 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 -33.388 3.505 33.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.029 3.971 11 C -0.158 4.158 12 C 0.006 3.994 13 N -0.335 5.335 14 C 0.020 3.980 15 C -0.116 4.116 16 C -0.133 4.133 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.151 4.151 20 C -0.139 4.139 21 C 0.297 3.703 22 O -0.459 6.459 23 C -0.169 4.169 24 C 0.022 3.978 25 H 0.074 0.926 26 C -0.179 4.179 27 C -0.186 4.186 28 C -0.046 4.046 29 O -0.321 6.321 30 H 0.061 0.939 31 H 0.204 0.796 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.149 0.851 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.157 0.843 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.072 0.928 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.182 -32.862 3.026 33.073 hybrid contribution 0.199 1.423 -0.339 1.476 sum -1.982 -31.439 2.688 31.616 Atomic orbital electron populations 1.69844 1.06760 1.26152 1.59421 1.25666 0.96510 1.01388 1.03461 0.84996 0.78182 0.79287 0.76819 1.18916 1.22019 1.21492 1.19711 0.91576 0.85316 1.41449 0.90532 1.42609 1.05625 1.01387 1.89500 1.20675 0.93953 0.84708 0.97722 1.21841 0.98517 0.94226 1.01228 1.21196 0.91090 0.83948 1.03130 1.48035 1.45562 1.33614 1.06318 1.20763 0.96627 0.95978 0.84635 1.20284 0.97192 0.95042 0.99076 1.21379 1.00295 0.92004 0.99610 1.21476 0.94484 1.00662 0.97856 1.21500 0.98321 0.96162 0.98451 1.21408 0.99621 0.93702 1.00340 1.21288 0.94586 1.00099 0.97932 1.21321 0.83067 0.83157 0.82742 1.90708 1.59397 1.62769 1.32994 1.21984 0.97942 0.99012 0.97956 1.22915 0.95236 0.86583 0.93073 0.92638 1.23003 0.96429 0.97733 1.00758 1.22930 1.00285 0.96375 0.99008 1.23574 0.95559 0.95870 0.89594 1.89276 1.63396 1.32788 1.46649 0.93889 0.79630 0.94820 0.97147 0.94620 0.91164 0.88395 0.91974 0.88787 0.86625 0.83827 0.83799 0.84433 0.85061 0.86034 0.86352 0.84271 0.88529 0.88361 0.89697 0.88878 0.92835 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.19 13.06 21.65 0.28 -61.90 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.75 -41.47 5.60 -343.46 -1.92 -43.39 16 10 C 0.16 6.86 6.26 86.38 0.54 7.40 16 11 C -0.12 -4.35 5.65 30.59 0.17 -4.18 16 12 C 0.13 3.83 5.47 86.38 0.47 4.30 16 13 N -0.60 -14.87 2.46 -826.14 -2.03 -16.90 16 14 C 0.14 2.33 5.51 85.64 0.47 2.80 16 15 C -0.11 -1.83 5.46 -19.86 -0.11 -1.94 16 16 C -0.11 -1.44 9.43 22.27 0.21 -1.23 16 17 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 18 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 19 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 20 C -0.12 -2.09 9.30 22.26 0.21 -1.88 16 21 C 0.51 14.26 7.57 87.66 0.66 14.92 16 22 O -0.58 -22.63 15.23 -0.98 -0.01 -22.65 16 23 C -0.13 -2.29 3.81 29.85 0.11 -2.18 16 24 C 0.08 1.64 2.75 31.10 0.09 1.73 16 25 H 0.06 1.35 7.83 -2.39 -0.02 1.33 16 26 C -0.14 -1.59 6.63 31.61 0.21 -1.39 16 27 C -0.15 -1.81 7.09 31.61 0.22 -1.58 16 28 C 0.03 0.61 7.62 72.48 0.55 1.16 16 29 O -0.40 -11.40 11.05 -146.94 -1.62 -13.02 16 30 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.37 21.91 7.67 -92.71 -0.71 21.20 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.10 2.40 6.95 -2.39 -0.02 2.38 16 37 H 0.06 2.12 7.35 -2.38 -0.02 2.11 16 38 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 39 H 0.12 1.27 6.04 -2.38 -0.01 1.25 16 40 H 0.14 1.00 6.24 -2.91 -0.02 0.99 16 41 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.12 2.07 7.39 -2.91 -0.02 2.05 16 45 H 0.12 1.72 7.36 -2.39 -0.02 1.70 16 46 H 0.14 1.38 6.02 -2.39 -0.01 1.36 16 47 H 0.10 0.74 7.87 -2.39 -0.02 0.72 16 48 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -83.35 418.86 2.70 -80.65 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.19 Total: 32.09 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.79 Total: -4.84 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -3.67 Total: -122.20 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.64 Total: -35.67 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -83.35 2.70 -80.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331080591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.139 kcal (2) G-P(sol) polarization free energy of solvation -83.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds