Wall clock time and date at job start Sat Apr 11 2020 07:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46542 * 269.99526 * 3 2 1 5 5 H 1.48496 * 109.47506 * 29.99664 * 3 2 1 6 6 H 1.48496 * 109.47144 * 150.00123 * 3 2 1 7 7 C 1.37880 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47219 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.46846 * 54.99635 * 12 11 10 14 14 N 1.46902 * 109.46720 * 295.00382 * 12 11 10 15 15 C 1.50701 * 109.47328 * 175.00199 * 12 11 10 16 16 O 1.21278 * 119.99695 * 99.99873 * 15 12 11 17 17 N 1.34780 * 119.99576 * 280.27673 * 15 12 11 18 18 C 1.46927 * 120.63359 * 359.44055 * 17 15 12 19 19 C 1.53622 * 108.54155 * 126.36967 * 18 17 15 20 20 C 1.53043 * 109.24025 * 54.85836 * 19 18 17 21 21 O 1.42897 * 109.45780 * 178.48940 * 20 19 18 22 22 C 1.35900 * 117.00205 * 275.35956 * 21 20 19 23 23 C 1.38733 * 120.05239 * 5.09563 * 22 21 20 24 24 C 1.38149 * 119.94074 * 179.74307 * 23 22 21 25 25 C 1.38266 * 120.05388 * 0.50320 * 24 23 22 26 26 C 1.38261 * 120.11381 * 359.76804 * 25 24 23 27 27 C 1.38148 * 120.05562 * 359.97438 * 26 25 24 28 28 C 1.53048 * 109.53864 * 298.50737 * 20 19 18 29 29 C 1.46925 * 120.62639 * 179.72481 * 17 15 12 30 30 H 0.97002 * 119.99824 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47047 * 60.00080 * 9 7 2 32 32 H 1.09002 * 109.47012 * 300.00179 * 9 7 2 33 33 H 1.09000 * 109.46981 * 60.00268 * 10 9 7 34 34 H 1.08997 * 109.47423 * 300.00524 * 10 9 7 35 35 H 1.09000 * 109.47070 * 60.00307 * 11 10 9 36 36 H 1.09002 * 109.47009 * 300.00394 * 11 10 9 37 37 H 1.00903 * 110.99841 * 299.99237 * 14 12 11 38 38 H 1.00897 * 111.00287 * 63.95387 * 14 12 11 39 39 H 1.08996 * 109.58771 * 246.20330 * 18 17 15 40 40 H 1.09000 * 109.58492 * 6.63089 * 18 17 15 41 41 H 1.09004 * 109.63488 * 294.86805 * 19 18 17 42 42 H 1.08995 * 109.42937 * 174.72484 * 19 18 17 43 43 H 1.08997 * 109.44965 * 58.52310 * 20 19 18 44 44 H 1.08003 * 120.03057 * 359.97438 * 23 22 21 45 45 H 1.07996 * 119.96933 * 180.27489 * 24 23 22 46 46 H 1.08003 * 119.93854 * 179.74756 * 25 24 23 47 47 H 1.08001 * 119.97186 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.02486 * 179.97438 * 27 26 25 49 49 H 1.08995 * 109.49712 * 301.41964 * 28 20 19 50 50 H 1.08994 * 109.52491 * 181.33104 * 28 20 19 51 51 H 1.09001 * 109.58382 * 353.37379 * 29 17 15 52 52 H 1.09006 * 109.58648 * 113.65341 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 6 2.4745 -6.1500 0.0024 13 1 3.1587 -6.0428 0.8441 14 7 3.2375 -6.1422 -1.2529 15 6 1.7251 -7.4516 0.1267 16 8 1.5128 -8.1256 -0.8590 17 7 1.2860 -7.8638 1.3325 18 6 1.5408 -7.0612 2.5365 19 6 0.2022 -6.8054 3.2454 20 6 -0.4885 -8.1438 3.5172 21 8 -1.7179 -7.9134 4.2080 22 6 -1.6518 -7.7861 5.5595 23 6 -0.4196 -7.7753 6.1968 24 6 -0.3549 -7.6405 7.5702 25 6 -1.5172 -7.5269 8.3104 26 6 -2.7467 -7.5431 7.6781 27 6 -2.8166 -7.6724 6.3044 28 6 -0.7740 -8.8512 2.1904 29 6 0.5487 -9.1274 1.4687 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5575 -0.8880 32 1 0.6247 -2.5563 0.8920 33 1 2.8726 -3.6039 0.8910 34 1 2.8713 -3.6047 -0.8890 35 1 0.8533 -5.0450 -0.8877 36 1 0.8539 -5.0446 0.8922 37 1 2.6252 -6.2404 -2.0489 38 1 3.7992 -5.3076 -1.3295 39 1 2.2120 -7.6039 3.2020 40 1 1.9933 -6.1109 2.2531 41 1 -0.4357 -6.1888 2.6121 42 1 0.3842 -6.2916 4.1893 43 1 0.1607 -8.7693 4.1299 44 1 0.4884 -7.8683 5.6195 45 1 0.6042 -7.6275 8.0664 46 1 -1.4646 -7.4257 9.3844 47 1 -3.6531 -7.4547 8.2585 48 1 -3.7772 -7.6854 5.8111 49 1 -1.4026 -8.2153 1.5670 50 1 -1.2870 -9.7933 2.3829 51 1 0.3465 -9.5408 0.4806 52 1 1.1419 -9.8360 2.0468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339892650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:26 Heat of formation + Delta-G solvation = -63.208686 kcal Electronic energy + Delta-G solvation = -30591.575703 eV Core-core repulsion = 26555.413900 eV Total energy + Delta-G solvation = -4036.161803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93998 -40.06946 -38.17326 -36.70493 -36.07108 -33.41863 -32.58384 -31.62882 -31.27016 -31.03066 -29.94624 -27.95009 -26.13749 -24.88616 -23.69284 -22.96528 -22.62634 -22.04425 -20.83453 -20.24615 -19.01604 -18.58755 -17.67991 -16.44930 -16.35432 -16.22892 -15.91173 -15.56430 -15.31998 -15.08691 -14.80415 -14.64352 -14.51114 -14.07379 -13.98296 -13.83553 -13.68011 -13.46585 -13.35534 -12.85265 -12.65080 -12.43579 -12.25710 -12.15545 -11.91913 -11.86861 -11.82230 -11.58029 -11.25398 -11.17569 -10.87217 -10.83560 -10.75670 -10.75293 -10.59038 -9.84409 -9.75626 -9.40999 -9.27480 -9.16510 -8.88363 -8.51191 -8.44585 -8.39938 -6.04983 -4.08182 1.06139 1.18629 2.59962 2.75054 2.92456 3.28308 3.34944 3.37573 3.52396 4.22217 4.32735 4.40896 4.47496 4.55903 4.59734 4.65444 4.71442 4.80447 4.84568 4.92344 4.97306 5.08289 5.11020 5.12506 5.24195 5.29203 5.30159 5.30998 5.44642 5.45337 5.47967 5.61059 5.68941 5.72745 5.78994 5.89815 5.92578 6.06995 6.13725 6.21714 6.26369 6.30536 6.51009 6.52466 6.69316 6.98108 7.07849 7.18730 7.31320 7.57144 7.59899 7.72185 7.93702 8.15939 8.35402 8.98883 9.56499 11.06133 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007883 B = 0.002761 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.881371 B =10139.057044 C =12877.048190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C -0.149 4.149 12 C 0.074 3.926 13 H 0.099 0.901 14 N -0.830 5.830 15 C 0.529 3.471 16 O -0.533 6.533 17 N -0.617 5.617 18 C 0.107 3.893 19 C -0.163 4.163 20 C 0.089 3.911 21 O -0.307 6.307 22 C 0.134 3.866 23 C -0.211 4.211 24 C -0.080 4.080 25 C -0.162 4.162 26 C -0.081 4.081 27 C -0.155 4.155 28 C -0.129 4.129 29 C 0.117 3.883 30 H 0.261 0.739 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.349 0.651 38 H 0.352 0.648 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.101 0.899 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 -20.301 14.152 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.188 4.188 12 C -0.041 4.041 13 H 0.117 0.883 14 N -0.362 5.362 15 C 0.318 3.682 16 O -0.408 6.408 17 N -0.353 5.353 18 C -0.016 4.016 19 C -0.202 4.202 20 C 0.033 3.967 21 O -0.221 6.221 22 C 0.089 3.911 23 C -0.229 4.229 24 C -0.098 4.098 25 C -0.181 4.181 26 C -0.099 4.099 27 C -0.173 4.173 28 C -0.168 4.168 29 C -0.006 4.006 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.145 0.855 48 H 0.147 0.853 49 H 0.100 0.900 50 H 0.103 0.897 51 H 0.119 0.881 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.245 -21.204 13.735 25.294 hybrid contribution -0.019 1.980 0.036 1.980 sum -1.264 -19.224 13.770 23.680 Atomic orbital electron populations 1.69963 1.06078 1.26669 1.50635 1.25032 0.94841 0.99304 0.95257 0.86603 0.79842 0.83477 0.78145 1.20645 1.21199 1.19853 1.21231 0.92982 0.91048 1.50846 0.92696 1.19069 0.93886 0.91255 0.97207 1.21653 0.99130 0.93456 1.00357 1.22458 0.98370 0.95078 1.02929 1.21478 0.95546 0.91398 0.95652 0.88280 1.58703 1.28210 1.46056 1.03274 1.20754 0.78317 0.87080 0.82074 1.90648 1.56812 1.56744 1.36572 1.48121 1.56822 1.22822 1.07509 1.21884 0.96364 0.96996 0.86343 1.22624 0.97345 0.97704 1.02501 1.22440 0.84600 0.96542 0.93137 1.86143 1.33594 1.86224 1.16144 1.19052 0.94034 0.95367 0.82685 1.21332 0.96876 1.08740 0.95998 1.20972 0.98601 0.97019 0.93211 1.21069 0.92513 1.04418 1.00052 1.20980 0.98064 0.97398 0.93485 1.20486 0.96947 1.06371 0.93531 1.21990 0.98515 1.01678 0.94569 1.21503 0.90957 0.85755 1.02351 0.92954 0.96742 0.96642 0.93086 0.93287 0.91677 0.91500 0.83707 0.83324 0.91016 0.88088 0.89508 0.89667 0.90707 0.85255 0.85824 0.86011 0.85459 0.85256 0.90002 0.89715 0.88076 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.02 4.92 -26.73 -0.13 -2.15 16 11 C -0.15 -2.33 4.52 -26.73 -0.12 -2.45 16 12 C 0.07 1.01 2.35 -68.86 -0.16 0.85 16 13 H 0.10 1.21 6.79 -51.93 -0.35 0.86 16 14 N -0.83 -11.57 8.94 -5.65 -0.05 -11.62 16 15 C 0.53 7.56 6.95 -10.98 -0.08 7.48 16 16 O -0.53 -9.27 15.66 5.56 0.09 -9.18 16 17 N -0.62 -6.90 2.97 -172.50 -0.51 -7.41 16 18 C 0.11 0.98 5.78 -3.49 -0.02 0.96 16 19 C -0.16 -1.57 5.34 -26.39 -0.14 -1.71 16 20 C 0.09 0.81 2.08 -26.68 -0.06 0.75 16 21 O -0.31 -3.40 9.80 -19.43 -0.19 -3.59 16 22 C 0.13 1.41 6.59 -39.22 -0.26 1.15 16 23 C -0.21 -1.92 8.22 -39.43 -0.32 -2.25 16 24 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 25 C -0.16 -1.30 10.04 -39.56 -0.40 -1.70 16 26 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 27 C -0.15 -1.51 9.99 -39.43 -0.39 -1.91 16 28 C -0.13 -1.15 5.73 -26.61 -0.15 -1.31 16 29 C 0.12 1.12 6.43 -3.71 -0.02 1.09 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.89 6.87 -51.93 -0.36 0.53 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.02 6.98 -51.93 -0.36 0.66 16 37 H 0.35 5.06 8.58 -39.29 -0.34 4.73 16 38 H 0.35 4.57 7.55 -39.29 -0.30 4.28 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.98 4.85 -51.93 -0.25 0.73 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.78 6.92 -51.93 -0.36 0.42 16 43 H 0.08 0.57 6.31 -51.93 -0.33 0.25 16 44 H 0.13 0.99 5.45 -52.48 -0.29 0.70 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 1.11 7.01 -51.93 -0.36 0.74 16 52 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 408.92 15.07 6.16 6.16 Total: -1.00 -33.01 408.92 -10.72 -43.73 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.33 Total: 7.58 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -3.60 Total: -16.10 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.17 Total: -44.95 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.10 Total: -12.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.01 -10.72 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339892650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.475 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds