Wall clock time and date at job start Sat Apr 11 2020 07:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46542 * 269.99526 * 3 2 1 5 5 H 1.48496 * 109.47506 * 29.99664 * 3 2 1 6 6 H 1.48496 * 109.47144 * 150.00123 * 3 2 1 7 7 C 1.37880 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47219 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.46846 * 54.99635 * 12 11 10 14 14 N 1.46902 * 109.46720 * 295.00382 * 12 11 10 15 15 C 1.50701 * 109.47328 * 175.00199 * 12 11 10 16 16 O 1.21278 * 119.99695 * 99.99873 * 15 12 11 17 17 N 1.34780 * 119.99576 * 280.27673 * 15 12 11 18 18 C 1.46927 * 120.63359 * 359.44055 * 17 15 12 19 19 C 1.53622 * 108.54155 * 126.36967 * 18 17 15 20 20 C 1.53043 * 109.24025 * 54.85836 * 19 18 17 21 21 O 1.42897 * 109.45780 * 178.48940 * 20 19 18 22 22 C 1.35900 * 117.00205 * 275.35956 * 21 20 19 23 23 C 1.38733 * 120.05239 * 5.09563 * 22 21 20 24 24 C 1.38149 * 119.94074 * 179.74307 * 23 22 21 25 25 C 1.38266 * 120.05388 * 0.50320 * 24 23 22 26 26 C 1.38261 * 120.11381 * 359.76804 * 25 24 23 27 27 C 1.38148 * 120.05562 * 359.97438 * 26 25 24 28 28 C 1.53048 * 109.53864 * 298.50737 * 20 19 18 29 29 C 1.46925 * 120.62639 * 179.72481 * 17 15 12 30 30 H 0.97002 * 119.99824 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47047 * 60.00080 * 9 7 2 32 32 H 1.09002 * 109.47012 * 300.00179 * 9 7 2 33 33 H 1.09000 * 109.46981 * 60.00268 * 10 9 7 34 34 H 1.08997 * 109.47423 * 300.00524 * 10 9 7 35 35 H 1.09000 * 109.47070 * 60.00307 * 11 10 9 36 36 H 1.09002 * 109.47009 * 300.00394 * 11 10 9 37 37 H 1.00903 * 110.99841 * 299.99237 * 14 12 11 38 38 H 1.00897 * 111.00287 * 63.95387 * 14 12 11 39 39 H 1.08996 * 109.58771 * 246.20330 * 18 17 15 40 40 H 1.09000 * 109.58492 * 6.63089 * 18 17 15 41 41 H 1.09004 * 109.63488 * 294.86805 * 19 18 17 42 42 H 1.08995 * 109.42937 * 174.72484 * 19 18 17 43 43 H 1.08997 * 109.44965 * 58.52310 * 20 19 18 44 44 H 1.08003 * 120.03057 * 359.97438 * 23 22 21 45 45 H 1.07996 * 119.96933 * 180.27489 * 24 23 22 46 46 H 1.08003 * 119.93854 * 179.74756 * 25 24 23 47 47 H 1.08001 * 119.97186 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.02486 * 179.97438 * 27 26 25 49 49 H 1.08995 * 109.49712 * 301.41964 * 28 20 19 50 50 H 1.08994 * 109.52491 * 181.33104 * 28 20 19 51 51 H 1.09001 * 109.58382 * 353.37379 * 29 17 15 52 52 H 1.09006 * 109.58648 * 113.65341 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 6 2.4745 -6.1500 0.0024 13 1 3.1587 -6.0428 0.8441 14 7 3.2375 -6.1422 -1.2529 15 6 1.7251 -7.4516 0.1267 16 8 1.5128 -8.1256 -0.8590 17 7 1.2860 -7.8638 1.3325 18 6 1.5408 -7.0612 2.5365 19 6 0.2022 -6.8054 3.2454 20 6 -0.4885 -8.1438 3.5172 21 8 -1.7179 -7.9134 4.2080 22 6 -1.6518 -7.7861 5.5595 23 6 -0.4196 -7.7753 6.1968 24 6 -0.3549 -7.6405 7.5702 25 6 -1.5172 -7.5269 8.3104 26 6 -2.7467 -7.5431 7.6781 27 6 -2.8166 -7.6724 6.3044 28 6 -0.7740 -8.8512 2.1904 29 6 0.5487 -9.1274 1.4687 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5575 -0.8880 32 1 0.6247 -2.5563 0.8920 33 1 2.8726 -3.6039 0.8910 34 1 2.8713 -3.6047 -0.8890 35 1 0.8533 -5.0450 -0.8877 36 1 0.8539 -5.0446 0.8922 37 1 2.6252 -6.2404 -2.0489 38 1 3.7992 -5.3076 -1.3295 39 1 2.2120 -7.6039 3.2020 40 1 1.9933 -6.1109 2.2531 41 1 -0.4357 -6.1888 2.6121 42 1 0.3842 -6.2916 4.1893 43 1 0.1607 -8.7693 4.1299 44 1 0.4884 -7.8683 5.6195 45 1 0.6042 -7.6275 8.0664 46 1 -1.4646 -7.4257 9.3844 47 1 -3.6531 -7.4547 8.2585 48 1 -3.7772 -7.6854 5.8111 49 1 -1.4026 -8.2153 1.5670 50 1 -1.2870 -9.7933 2.3829 51 1 0.3465 -9.5408 0.4806 52 1 1.1419 -9.8360 2.0468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339892650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:25 Heat of formation + Delta-G solvation = -83.472235 kcal Electronic energy + Delta-G solvation = -30592.454396 eV Core-core repulsion = 26555.413900 eV Total energy + Delta-G solvation = -4037.040497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78132 -40.96327 -38.94813 -37.63699 -37.35890 -35.31143 -33.45604 -33.00461 -32.37716 -31.70626 -30.62699 -29.45879 -27.43772 -26.01864 -24.70179 -23.97321 -23.55746 -22.94444 -21.86787 -21.64107 -19.95330 -19.29278 -18.72768 -18.46874 -17.29890 -17.02235 -16.65174 -16.54273 -16.42124 -16.30876 -16.10575 -15.81828 -15.50805 -15.07411 -14.91346 -14.80475 -14.52872 -14.36394 -14.29228 -14.23383 -13.89836 -13.58334 -13.49887 -13.33117 -12.99914 -12.91592 -12.78183 -12.58097 -12.47446 -12.41737 -12.36880 -12.32102 -11.88080 -11.56395 -11.54237 -11.51436 -11.41413 -11.25666 -10.71124 -10.57109 -9.91769 -9.81655 -9.67825 -9.13398 -8.21024 -6.32490 0.42149 0.52116 1.39990 1.40799 1.50506 1.52147 1.85733 2.18148 2.40085 2.87435 3.12614 3.34698 3.57153 3.63058 3.66869 3.87034 3.89911 3.93448 3.97292 4.01810 4.02700 4.18917 4.21200 4.31974 4.36038 4.37962 4.48255 4.53160 4.56054 4.62275 4.70168 4.71624 4.74150 4.82314 4.83839 4.96630 5.01517 5.10710 5.12603 5.19110 5.21859 5.40891 5.45528 5.50906 5.51506 5.63705 5.70886 5.83795 5.89996 6.00592 6.22364 6.28795 6.47118 6.49349 6.85634 7.09415 7.37522 8.90621 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007883 B = 0.002761 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.881371 B =10139.057044 C =12877.048190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.093 4.093 11 C -0.135 4.135 12 C 0.084 3.916 13 H 0.123 0.877 14 N -0.831 5.831 15 C 0.524 3.476 16 O -0.571 6.571 17 N -0.611 5.611 18 C 0.105 3.895 19 C -0.159 4.159 20 C 0.091 3.909 21 O -0.327 6.327 22 C 0.110 3.890 23 C -0.217 4.217 24 C -0.086 4.086 25 C -0.167 4.167 26 C -0.086 4.086 27 C -0.176 4.176 28 C -0.123 4.123 29 C 0.117 3.883 30 H 0.262 0.738 31 H -0.018 1.018 32 H -0.010 1.010 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.345 0.655 38 H 0.357 0.643 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.127 0.873 49 H 0.056 0.944 50 H 0.100 0.900 51 H 0.084 0.916 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -20.805 16.326 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.175 4.175 12 C -0.032 4.032 13 H 0.141 0.859 14 N -0.363 5.363 15 C 0.313 3.687 16 O -0.449 6.449 17 N -0.345 5.345 18 C -0.017 4.017 19 C -0.197 4.197 20 C 0.035 3.965 21 O -0.242 6.242 22 C 0.066 3.934 23 C -0.235 4.235 24 C -0.104 4.104 25 C -0.185 4.185 26 C -0.104 4.104 27 C -0.195 4.195 28 C -0.161 4.161 29 C -0.005 4.005 30 H 0.071 0.929 31 H 0.000 1.000 32 H 0.009 0.991 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.145 0.855 49 H 0.075 0.925 50 H 0.119 0.881 51 H 0.103 0.897 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.065 -21.715 15.946 26.962 hybrid contribution -0.816 2.123 -0.569 2.345 sum 0.249 -19.592 15.376 24.907 Atomic orbital electron populations 1.70109 1.07930 1.27697 1.51850 1.26006 0.95705 1.03485 0.94833 0.85467 0.78828 0.78483 0.78413 1.20018 1.21007 1.18281 1.21719 0.93691 0.92196 1.50206 0.91700 1.18986 0.94437 0.93390 0.94409 1.21426 0.97882 0.92302 1.01457 1.22258 0.98380 0.94754 1.02082 1.21419 0.95151 0.90157 0.96427 0.85897 1.58726 1.28079 1.46296 1.03210 1.20829 0.78376 0.87023 0.82512 1.90632 1.58454 1.57851 1.37974 1.48191 1.55731 1.23316 1.07248 1.22078 0.96549 0.97180 0.85865 1.22558 0.97186 0.97792 1.02193 1.22488 0.84471 0.96370 0.93185 1.86115 1.34620 1.86627 1.16817 1.19310 0.94980 0.96650 0.82510 1.21539 0.96776 1.08570 0.96653 1.21333 0.99812 0.96219 0.93013 1.21431 0.92280 1.03452 1.01321 1.21281 0.99342 0.96759 0.93037 1.20707 0.96992 1.07322 0.94474 1.21920 0.98003 1.01994 0.94208 1.21624 0.91407 0.85434 1.02045 0.92900 1.00002 0.99132 0.91494 0.92498 0.93675 0.91383 0.84220 0.82720 0.87467 0.88456 0.92533 0.88950 0.88409 0.83835 0.83523 0.83796 0.83488 0.85490 0.92490 0.88112 0.89735 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.44 4.92 30.59 0.15 -3.29 16 11 C -0.13 -4.25 4.52 30.59 0.14 -4.12 16 12 C 0.08 2.19 2.35 44.17 0.10 2.29 16 13 H 0.12 2.66 6.79 -2.39 -0.02 2.65 16 14 N -0.83 -22.39 8.94 -171.79 -1.54 -23.93 16 15 C 0.52 14.67 6.95 87.66 0.61 15.28 16 16 O -0.57 -20.01 15.66 -3.02 -0.05 -20.06 16 17 N -0.61 -12.89 2.97 -818.06 -2.43 -15.31 16 18 C 0.11 1.70 5.78 86.51 0.50 2.20 16 19 C -0.16 -2.93 5.34 30.82 0.16 -2.76 16 20 C 0.09 1.54 2.08 30.62 0.06 1.61 16 21 O -0.33 -7.26 9.80 -92.43 -0.91 -8.16 16 22 C 0.11 2.27 6.59 22.51 0.15 2.42 16 23 C -0.22 -3.57 8.22 22.37 0.18 -3.39 16 24 C -0.09 -1.21 10.04 22.26 0.22 -0.99 16 25 C -0.17 -2.31 10.04 22.28 0.22 -2.09 16 26 C -0.09 -1.33 10.04 22.25 0.22 -1.11 16 27 C -0.18 -3.44 9.99 22.37 0.22 -3.22 16 28 C -0.12 -2.14 5.73 30.67 0.18 -1.96 16 29 C 0.12 2.08 6.43 86.36 0.56 2.64 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 31 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 32 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.01 6.87 -2.39 -0.02 2.00 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.12 6.98 -2.39 -0.02 2.10 16 37 H 0.34 9.99 8.58 -89.69 -0.77 9.22 16 38 H 0.36 8.77 7.55 -89.70 -0.68 8.10 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.67 4.85 -2.39 -0.01 1.66 16 41 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.09 1.57 6.92 -2.39 -0.02 1.56 16 43 H 0.10 1.23 6.31 -2.39 -0.02 1.21 16 44 H 0.14 1.80 5.45 -2.91 -0.02 1.79 16 45 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 46 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.08 1.84 7.01 -2.39 -0.02 1.82 16 52 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -73.42 408.92 1.41 -72.01 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.51 Total: 30.94 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.53 Total: -24.43 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -3.68 Total: -95.97 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.95 Total: -28.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.42 1.41 -72.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339892650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.467 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds