Wall clock time and date at job start Sat Apr 11 2020 07:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00133 * 2 1 4 4 H 1.48502 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46846 * 299.99658 * 3 2 1 6 6 H 1.48498 * 109.47163 * 59.99784 * 3 2 1 7 7 C 1.37876 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47109 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47122 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47042 * 305.00023 * 12 11 10 14 14 N 1.46905 * 109.47176 * 64.99710 * 12 11 10 15 15 C 1.50699 * 109.47336 * 184.99692 * 12 11 10 16 16 O 1.21272 * 120.00344 * 260.00016 * 15 12 11 17 17 N 1.34780 * 119.99662 * 79.99981 * 15 12 11 18 18 C 1.46925 * 120.62877 * 179.97438 * 17 15 12 19 19 C 1.53189 * 108.77927 * 233.58794 * 18 17 15 20 20 C 1.53036 * 109.31228 * 305.36853 * 19 18 17 21 21 O 1.42907 * 109.46106 * 181.38335 * 20 19 18 22 22 C 1.35893 * 117.00004 * 155.07970 * 21 20 19 23 23 C 1.38733 * 120.05785 * 5.46118 * 22 21 20 24 24 C 1.38142 * 119.94510 * 179.97438 * 23 22 21 25 25 C 1.38261 * 120.05886 * 0.02562 * 24 23 22 26 26 C 1.38272 * 120.11107 * 359.95898 * 25 24 23 27 27 C 1.38144 * 120.05242 * 0.04454 * 26 25 24 28 28 C 1.53041 * 109.52739 * 61.36911 * 20 19 18 29 29 C 1.46924 * 120.63050 * 359.97438 * 17 15 12 30 30 H 0.97000 * 119.99904 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47315 * 59.99898 * 9 7 2 32 32 H 1.08997 * 109.46679 * 300.00008 * 9 7 2 33 33 H 1.09001 * 109.46851 * 59.99781 * 10 9 7 34 34 H 1.09002 * 109.46879 * 299.99971 * 10 9 7 35 35 H 1.08998 * 109.47348 * 59.99665 * 11 10 9 36 36 H 1.09002 * 109.47289 * 299.99796 * 11 10 9 37 37 H 1.00906 * 110.99642 * 60.00446 * 14 12 11 38 38 H 1.00898 * 111.00313 * 183.95438 * 14 12 11 39 39 H 1.09002 * 109.58261 * 113.79956 * 18 17 15 40 40 H 1.08995 * 109.59049 * 353.38075 * 18 17 15 41 41 H 1.09001 * 109.50147 * 185.41652 * 19 18 17 42 42 H 1.08998 * 109.49416 * 65.31840 * 19 18 17 43 43 H 1.09000 * 109.46181 * 301.35519 * 20 19 18 44 44 H 1.08004 * 120.02909 * 359.70333 * 23 22 21 45 45 H 1.08001 * 119.97487 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.95026 * 179.97438 * 25 24 23 47 47 H 1.07998 * 119.97235 * 180.02562 * 26 25 24 48 48 H 1.07999 * 120.02906 * 179.97438 * 27 26 25 49 49 H 1.09010 * 109.49787 * 58.58210 * 28 20 19 50 50 H 1.09008 * 109.50057 * 178.67344 * 28 20 19 51 51 H 1.09005 * 109.58523 * 246.19839 * 29 17 15 52 52 H 1.09000 * 109.58767 * 6.48271 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 6 2.4744 -6.1500 -0.0024 13 1 3.1585 -6.0429 -0.8441 14 7 3.2375 -6.1423 1.2529 15 6 1.7250 -7.4516 -0.1267 16 8 1.5127 -8.1256 0.8589 17 7 1.2907 -7.8665 -1.3332 18 6 0.5593 -9.1333 -1.4705 19 6 1.2531 -9.9908 -2.5335 20 6 1.3715 -9.1895 -3.8319 21 8 1.9894 -9.9977 -4.8355 22 6 1.7199 -9.6865 -6.1306 23 6 0.9709 -8.5585 -6.4328 24 6 0.6988 -8.2440 -7.7501 25 6 1.1716 -9.0526 -8.7671 26 6 1.9186 -10.1773 -8.4686 27 6 2.1934 -10.4961 -7.1528 28 6 2.2226 -7.9414 -3.5870 29 6 1.5398 -7.0607 -2.5362 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6240 -2.5574 0.8880 33 1 2.8712 -3.6048 0.8890 34 1 2.8725 -3.6040 -0.8909 35 1 0.8539 -5.0447 -0.8922 36 1 0.8532 -5.0450 0.8877 37 1 2.6252 -6.2405 2.0489 38 1 3.9452 -6.8615 1.2503 39 1 -0.4671 -8.9312 -1.7768 40 1 0.5608 -9.6614 -0.5170 41 1 0.6666 -10.8916 -2.7141 42 1 2.2481 -10.2677 -2.1849 43 1 0.3779 -8.8915 -4.1666 44 1 0.5973 -7.9291 -5.6386 45 1 0.1161 -7.3658 -7.9859 46 1 0.9575 -8.8054 -9.7963 47 1 2.2872 -10.8071 -9.2647 48 1 2.7766 -11.3749 -6.9201 49 1 3.2084 -8.2378 -3.2284 50 1 2.3262 -7.3832 -4.5176 51 1 0.5935 -6.6893 -2.9297 52 1 2.1864 -6.2198 -2.2854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339892652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:29 Heat of formation + Delta-G solvation = -63.924327 kcal Electronic energy + Delta-G solvation = -30265.733823 eV Core-core repulsion = 26229.540987 eV Total energy + Delta-G solvation = -4036.192836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04141 -40.18621 -38.29105 -36.80682 -35.82801 -33.39392 -32.67353 -31.72032 -31.36837 -31.12004 -30.02843 -28.00181 -26.09741 -24.82826 -23.72633 -23.07103 -22.67669 -22.03134 -20.79857 -20.03577 -19.19394 -18.66763 -17.60301 -16.49138 -16.40199 -16.30185 -16.03036 -15.83194 -15.61418 -15.09240 -15.01346 -14.55415 -14.47489 -14.30912 -13.94648 -13.92052 -13.70424 -13.49684 -13.13589 -12.95848 -12.69119 -12.41502 -12.34788 -12.17566 -11.93461 -11.78773 -11.68755 -11.47568 -11.26677 -11.16630 -10.96826 -10.85412 -10.77494 -10.60142 -10.43058 -10.17207 -9.63061 -9.35422 -9.24936 -9.05036 -8.96283 -8.58711 -8.53740 -8.31273 -5.96769 -3.98279 0.98277 1.10103 2.45326 2.71141 2.81483 3.32969 3.40526 3.44352 3.45146 4.13760 4.21151 4.40657 4.48156 4.49533 4.52887 4.56996 4.59721 4.69354 4.77589 4.85660 4.88525 4.99701 5.03562 5.08621 5.20757 5.22288 5.34217 5.37573 5.37976 5.39298 5.43912 5.52635 5.62000 5.65813 5.76205 5.88931 5.97953 6.06682 6.08033 6.19312 6.22664 6.40365 6.42502 6.79098 6.98593 7.02270 7.08290 7.20484 7.23522 7.49023 7.73466 7.88280 7.99910 8.04761 8.48109 9.09612 9.65666 11.14676 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.002287 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.958927 B =12239.145091 C =14456.348552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.105 4.105 12 C 0.076 3.924 13 H 0.101 0.899 14 N -0.811 5.811 15 C 0.487 3.513 16 O -0.549 6.549 17 N -0.613 5.613 18 C 0.112 3.888 19 C -0.127 4.127 20 C 0.087 3.913 21 O -0.309 6.309 22 C 0.132 3.868 23 C -0.210 4.210 24 C -0.079 4.079 25 C -0.161 4.161 26 C -0.082 4.082 27 C -0.156 4.156 28 C -0.161 4.161 29 C 0.105 3.895 30 H 0.259 0.741 31 H 0.012 0.988 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.350 0.650 38 H 0.338 0.662 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.131 0.869 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.081 0.919 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -23.902 -14.774 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.039 4.039 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.274 3.726 16 O -0.426 6.426 17 N -0.347 5.347 18 C -0.011 4.011 19 C -0.165 4.165 20 C 0.031 3.969 21 O -0.223 6.223 22 C 0.086 3.914 23 C -0.229 4.229 24 C -0.097 4.097 25 C -0.179 4.179 26 C -0.100 4.100 27 C -0.174 4.174 28 C -0.200 4.200 29 C -0.018 4.018 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.165 0.835 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.099 0.901 50 H 0.104 0.896 51 H 0.095 0.905 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.161 -23.539 -14.331 27.643 hybrid contribution -0.169 0.136 -0.084 0.233 sum 1.993 -23.403 -14.415 27.558 Atomic orbital electron populations 1.69976 1.06048 1.26359 1.51331 1.25035 0.94832 0.99240 0.95509 0.86567 0.80197 0.83924 0.77506 1.19710 1.21115 1.21073 1.21314 0.93110 0.91064 1.49879 0.92602 1.19122 0.94084 0.91636 0.96919 1.21542 0.98764 0.92248 1.01189 1.21679 0.96561 0.93993 1.02054 1.21816 0.95910 0.90953 0.95251 0.88128 1.59058 1.17341 1.54247 1.03286 1.22579 0.78820 0.88955 0.82201 1.90658 1.57811 1.57460 1.36653 1.48271 1.56615 1.22149 1.07690 1.21548 0.94842 0.84685 1.00012 1.21970 1.03085 0.98743 0.92719 1.22456 0.96355 0.90857 0.87230 1.86121 1.68068 1.55810 1.12314 1.19044 0.94763 0.93580 0.83966 1.21367 1.04398 0.98926 0.98168 1.21014 0.97753 0.98858 0.92037 1.21092 1.01072 0.96352 0.99417 1.20981 0.96906 0.96684 0.95430 1.20462 1.04734 1.01143 0.91105 1.22537 1.00666 0.96412 1.00354 1.21843 1.01592 0.93928 0.84425 0.93167 0.96986 0.96783 0.91777 0.93709 0.91910 0.91843 0.83545 0.85019 0.91148 0.88157 0.89699 0.90308 0.90479 0.85145 0.85642 0.85937 0.85467 0.85357 0.90077 0.89574 0.90501 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -1.99 5.04 -26.73 -0.13 -2.12 16 11 C -0.10 -1.68 4.61 -26.74 -0.12 -1.81 16 12 C 0.08 1.02 2.30 -68.86 -0.16 0.86 16 13 H 0.10 1.21 6.54 -51.93 -0.34 0.87 16 14 N -0.81 -11.00 8.44 -5.65 -0.05 -11.04 16 15 C 0.49 6.53 6.94 -10.98 -0.08 6.45 16 16 O -0.55 -8.90 15.66 5.56 0.09 -8.81 16 17 N -0.61 -6.53 2.97 -172.79 -0.51 -7.05 16 18 C 0.11 1.03 6.43 -3.71 -0.02 1.01 16 19 C -0.13 -1.00 5.73 -26.61 -0.15 -1.15 16 20 C 0.09 0.70 2.08 -26.69 -0.06 0.65 16 21 O -0.31 -2.98 9.80 -19.40 -0.19 -3.17 16 22 C 0.13 1.23 6.60 -39.21 -0.26 0.97 16 23 C -0.21 -1.78 8.23 -39.43 -0.32 -2.11 16 24 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 25 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 26 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 27 C -0.16 -1.32 9.99 -39.43 -0.39 -1.71 16 28 C -0.16 -1.29 5.32 -26.63 -0.14 -1.43 16 29 C 0.11 0.93 5.59 -3.73 -0.02 0.91 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.95 7.19 -51.93 -0.37 0.58 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.35 4.95 8.58 -39.29 -0.34 4.61 16 38 H 0.34 3.99 9.06 -39.29 -0.36 3.63 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.06 7.01 -51.93 -0.36 0.69 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.57 6.31 -51.93 -0.33 0.24 16 44 H 0.13 0.97 5.45 -52.48 -0.29 0.68 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 50 H 0.09 0.65 6.93 -51.92 -0.36 0.29 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.10 0.94 5.18 -51.93 -0.27 0.67 16 LS Contribution 411.09 15.07 6.20 6.20 Total: -1.00 -33.20 411.09 -10.81 -44.02 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.45 Total: 5.59 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.61 Total: -16.13 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.18 Total: -44.39 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.10 Total: -11.98 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.20 -10.81 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339892652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.907 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds