Wall clock time and date at job start Sat Apr 11 2020 07:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00000 * 2 1 4 4 H 1.48501 * 109.46915 * 239.99815 * 3 2 1 5 5 H 1.48505 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47164 * 119.99568 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00408 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47447 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47138 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.46939 * 304.99140 * 12 11 10 14 14 N 1.46892 * 109.47751 * 64.99518 * 12 11 10 15 15 C 1.50701 * 109.47059 * 184.99962 * 12 11 10 16 16 O 1.21280 * 119.99838 * 259.99782 * 15 12 11 17 17 N 1.34781 * 120.00269 * 79.99222 * 15 12 11 18 18 C 1.47426 * 125.64717 * 0.04731 * 17 15 12 19 19 C 1.54907 * 104.83142 * 155.83110 * 18 17 15 20 20 C 1.55399 * 101.66583 * 36.92399 * 19 18 17 21 21 C 1.47017 * 125.64858 * 179.97438 * 17 15 12 22 22 C 1.53000 * 109.88562 * 300.67197 * 21 17 15 23 23 O 1.42898 * 109.46862 * 180.31512 * 22 21 17 24 24 C 1.50706 * 109.87837 * 61.68567 * 21 17 15 25 25 C 1.38238 * 119.99727 * 179.68456 * 24 21 17 26 26 C 1.38234 * 119.99693 * 180.02562 * 25 24 21 27 27 C 1.38234 * 120.00240 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38234 * 120.00207 * 359.69946 * 24 21 17 30 30 H 0.96995 * 120.00204 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46778 * 59.99738 * 9 7 2 32 32 H 1.09004 * 109.47042 * 299.99871 * 9 7 2 33 33 H 1.08996 * 109.47226 * 59.99575 * 10 9 7 34 34 H 1.09004 * 109.47107 * 300.00113 * 10 9 7 35 35 H 1.08995 * 109.47225 * 59.99986 * 11 10 9 36 36 H 1.09004 * 109.46874 * 300.00028 * 11 10 9 37 37 H 1.00899 * 110.99869 * 59.99971 * 14 12 11 38 38 H 1.00901 * 111.00564 * 183.95598 * 14 12 11 39 39 H 1.09003 * 110.36384 * 274.67376 * 18 17 15 40 40 H 1.09006 * 110.36395 * 36.88019 * 18 17 15 41 41 H 1.09000 * 110.99981 * 155.07990 * 19 18 17 42 42 H 1.08994 * 111.00709 * 278.89394 * 19 18 17 43 43 H 1.08997 * 110.85474 * 206.30011 * 20 19 18 44 44 H 1.09006 * 110.69775 * 82.95044 * 20 19 18 45 45 H 1.08996 * 109.46823 * 300.31249 * 22 21 17 46 46 H 1.08999 * 109.46802 * 60.31317 * 22 21 17 47 47 H 0.96704 * 113.99645 * 180.02562 * 23 22 21 48 48 H 1.07997 * 119.99846 * 359.97438 * 25 24 21 49 49 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 50 50 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 52 52 H 1.07999 * 120.00008 * 0.02562 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 1 3.1593 -6.0431 -0.8409 14 7 3.2369 -6.1420 1.2562 15 6 1.7253 -7.4516 -0.1239 16 8 1.5124 -8.1254 0.8618 17 7 1.2917 -7.8670 -1.3306 18 6 1.4815 -7.1506 -2.6050 19 6 1.3948 -8.2488 -3.6940 20 6 0.2944 -9.1803 -3.1140 21 6 0.5526 -9.1102 -1.5941 22 6 1.3856 -10.3147 -1.1515 23 8 0.6623 -11.5179 -1.4182 24 6 -0.7590 -9.0937 -0.8520 25 6 -1.6267 -10.1646 -0.9582 26 6 -2.8300 -10.1492 -0.2779 27 6 -3.1653 -9.0633 0.5090 28 6 -2.2998 -7.9903 0.6113 29 6 -1.0945 -8.0076 -0.0653 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.8720 -3.6044 0.8904 34 1 2.8720 -3.6044 -0.8895 35 1 0.8540 -5.0447 -0.8903 36 1 0.8534 -5.0451 0.8897 37 1 2.6241 -6.2398 2.0518 38 1 3.9446 -6.8611 1.2542 39 1 0.6918 -6.4127 -2.7466 40 1 2.4587 -6.6682 -2.6272 41 1 1.0861 -7.8270 -4.6505 42 1 2.3423 -8.7789 -3.7907 43 1 0.4171 -10.1999 -3.4791 44 1 -0.6984 -8.8002 -3.3548 45 1 2.3268 -10.3272 -1.7010 46 1 1.5895 -10.2426 -0.0832 47 1 1.1314 -12.3238 -1.1619 48 1 -1.3649 -11.0127 -1.5733 49 1 -3.5081 -10.9856 -0.3612 50 1 -4.1056 -9.0512 1.0402 51 1 -2.5637 -7.1400 1.2226 52 1 -0.4168 -7.1707 0.0171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342143218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:43 Heat of formation + Delta-G solvation = -61.422182 kcal Electronic energy + Delta-G solvation = -31942.350170 eV Core-core repulsion = 27906.265835 eV Total energy + Delta-G solvation = -4036.084335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30215 -38.96387 -37.89333 -36.56822 -35.73495 -33.36703 -32.22901 -31.94668 -31.35160 -30.66296 -28.94900 -27.87994 -25.74437 -25.19462 -23.56960 -22.73863 -22.33829 -21.67270 -20.39666 -20.04807 -18.94784 -17.71601 -17.36412 -16.85732 -16.23762 -16.18577 -15.77130 -15.64547 -15.10683 -14.91415 -14.58675 -14.44628 -14.26141 -14.11491 -13.93309 -13.51377 -13.22823 -13.13128 -12.86519 -12.70879 -12.60489 -12.40856 -12.32883 -11.77553 -11.71595 -11.59499 -11.37537 -11.24098 -11.12926 -10.94212 -10.79588 -10.70490 -10.63217 -10.41918 -10.28619 -10.03252 -9.60939 -9.23251 -9.05878 -8.95477 -8.78015 -8.66670 -8.56384 -8.29114 -5.94901 -3.96685 1.39525 1.51761 2.47830 2.66359 3.36440 3.40628 3.43400 3.74925 4.07099 4.17942 4.27196 4.49848 4.53659 4.57550 4.69394 4.79419 4.80949 5.00007 5.06867 5.08402 5.10835 5.21532 5.25376 5.35437 5.40766 5.41126 5.47311 5.51962 5.62813 5.65583 5.66854 5.70173 5.86365 5.93256 6.02357 6.03409 6.10029 6.22908 6.42414 6.54364 6.60523 6.71189 6.80181 6.99826 7.06499 7.07533 7.23276 7.26779 7.36085 7.47830 7.74481 7.90076 8.02530 8.06404 8.49562 9.10695 9.67013 11.16464 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002737 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.721812 B =10229.328373 C =10889.523347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.098 4.098 11 C -0.104 4.104 12 C 0.081 3.919 13 H 0.100 0.900 14 N -0.810 5.810 15 C 0.496 3.504 16 O -0.537 6.537 17 N -0.607 5.607 18 C 0.095 3.905 19 C -0.134 4.134 20 C -0.115 4.115 21 C 0.209 3.791 22 C 0.078 3.922 23 O -0.565 6.565 24 C -0.087 4.087 25 C -0.095 4.095 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.125 4.125 29 C -0.090 4.090 30 H 0.260 0.740 31 H 0.012 0.988 32 H 0.013 0.987 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.350 0.650 38 H 0.337 0.663 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.379 0.621 48 H 0.135 0.865 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -25.315 -6.659 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.035 4.035 13 H 0.118 0.882 14 N -0.338 5.338 15 C 0.285 3.715 16 O -0.413 6.413 17 N -0.343 5.343 18 C -0.028 4.028 19 C -0.172 4.172 20 C -0.153 4.153 21 C 0.123 3.877 22 C 0.000 4.000 23 O -0.370 6.370 24 C -0.088 4.088 25 C -0.113 4.113 26 C -0.151 4.151 27 C -0.139 4.139 28 C -0.143 4.143 29 C -0.108 4.108 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.226 0.774 48 H 0.153 0.847 49 H 0.135 0.865 50 H 0.135 0.865 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.047 -24.331 -6.447 25.171 hybrid contribution 0.421 -0.351 0.415 0.688 sum 0.375 -24.682 -6.032 25.411 Atomic orbital electron populations 1.69958 1.06038 1.26581 1.51102 1.25026 0.94823 0.99185 0.95481 0.86683 0.79589 0.83269 0.78603 1.20291 1.21381 1.20254 1.21235 0.93019 0.91106 1.50203 0.92735 1.19106 0.94062 0.91581 0.96903 1.21527 0.98747 0.92208 1.01127 1.21663 0.96580 0.94069 1.01910 1.21782 0.95821 0.90640 0.95224 0.88223 1.59058 1.17310 1.54175 1.03290 1.22353 0.78860 0.89017 0.81314 1.90712 1.57208 1.57296 1.36097 1.48726 1.56303 1.21494 1.07790 1.22485 1.02852 0.95231 0.82185 1.22870 0.99428 0.96487 0.98410 1.22751 0.99796 1.01357 0.91436 1.19645 0.88740 0.84278 0.95026 1.22334 0.92954 0.84202 1.00546 1.86394 1.47542 1.15783 1.87254 1.19761 0.95067 0.95149 0.98778 1.21086 0.93103 0.97751 0.99349 1.21082 0.97169 0.98439 0.98428 1.21136 0.99458 0.94151 0.99150 1.21146 0.94468 0.98708 0.99985 1.21106 0.96175 0.98036 0.95509 0.93050 0.96986 0.96821 0.91838 0.93708 0.91905 0.91984 0.83524 0.85063 0.90257 0.89723 0.89260 0.90607 0.89074 0.90089 0.93530 0.91928 0.77398 0.84747 0.86468 0.86490 0.86213 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -1.98 5.04 -26.73 -0.13 -2.12 16 11 C -0.10 -1.70 4.80 -26.73 -0.13 -1.83 16 12 C 0.08 1.09 2.57 -68.87 -0.18 0.92 16 13 H 0.10 1.22 6.91 -51.92 -0.36 0.86 16 14 N -0.81 -10.91 8.44 -5.66 -0.05 -10.95 16 15 C 0.50 6.69 4.68 -10.98 -0.05 6.64 16 16 O -0.54 -8.57 13.51 5.56 0.08 -8.50 16 17 N -0.61 -6.95 2.29 -157.06 -0.36 -7.30 16 18 C 0.09 0.88 6.24 -2.53 -0.02 0.87 16 19 C -0.13 -0.96 7.09 -24.45 -0.17 -1.13 16 20 C -0.12 -1.00 5.64 -24.77 -0.14 -1.14 16 21 C 0.21 2.30 0.55 -131.99 -0.07 2.23 16 22 C 0.08 0.80 5.88 37.16 0.22 1.02 16 23 O -0.56 -4.79 10.01 -35.23 -0.35 -5.14 16 24 C -0.09 -1.14 4.38 -104.62 -0.46 -1.60 16 25 C -0.09 -1.14 8.49 -39.58 -0.34 -1.48 16 26 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 27 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 28 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 29 C -0.09 -1.34 8.06 -39.58 -0.32 -1.66 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.33 7.75 -51.93 -0.40 0.92 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.99 7.41 -51.93 -0.38 0.61 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.35 4.95 8.58 -39.29 -0.34 4.61 16 38 H 0.34 3.92 9.06 -39.29 -0.36 3.56 16 39 H 0.08 0.78 7.87 -51.93 -0.41 0.38 16 40 H 0.08 0.70 6.92 -51.93 -0.36 0.34 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.72 7.31 -51.93 -0.38 0.34 16 44 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.80 6.70 -51.93 -0.35 0.46 16 47 H 0.38 1.68 9.12 45.56 0.42 2.09 16 48 H 0.13 1.47 6.15 -52.49 -0.32 1.14 16 49 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 52 H 0.12 1.88 5.14 -52.49 -0.27 1.61 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -33.73 405.47 -10.08 -43.81 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.69 Total: 10.02 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.53 Total: -18.39 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.33 Total: -44.72 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.28 Total: -13.64 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.73 -10.08 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342143218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.616 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds