Wall clock time and date at job start Sat Apr 11 2020 07:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00000 * 2 1 4 4 H 1.48501 * 109.46915 * 239.99815 * 3 2 1 5 5 H 1.48505 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47164 * 119.99568 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00408 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47447 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47138 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.46939 * 304.99140 * 12 11 10 14 14 N 1.46892 * 109.47751 * 64.99518 * 12 11 10 15 15 C 1.50701 * 109.47059 * 184.99962 * 12 11 10 16 16 O 1.21280 * 119.99838 * 259.99782 * 15 12 11 17 17 N 1.34781 * 120.00269 * 79.99222 * 15 12 11 18 18 C 1.47426 * 125.64717 * 0.04731 * 17 15 12 19 19 C 1.54907 * 104.83142 * 155.83110 * 18 17 15 20 20 C 1.55399 * 101.66583 * 36.92399 * 19 18 17 21 21 C 1.47017 * 125.64858 * 179.97438 * 17 15 12 22 22 C 1.53000 * 109.88562 * 300.67197 * 21 17 15 23 23 O 1.42898 * 109.46862 * 180.31512 * 22 21 17 24 24 C 1.50706 * 109.87837 * 61.68567 * 21 17 15 25 25 C 1.38238 * 119.99727 * 179.68456 * 24 21 17 26 26 C 1.38234 * 119.99693 * 180.02562 * 25 24 21 27 27 C 1.38234 * 120.00240 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38234 * 120.00207 * 359.69946 * 24 21 17 30 30 H 0.96995 * 120.00204 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46778 * 59.99738 * 9 7 2 32 32 H 1.09004 * 109.47042 * 299.99871 * 9 7 2 33 33 H 1.08996 * 109.47226 * 59.99575 * 10 9 7 34 34 H 1.09004 * 109.47107 * 300.00113 * 10 9 7 35 35 H 1.08995 * 109.47225 * 59.99986 * 11 10 9 36 36 H 1.09004 * 109.46874 * 300.00028 * 11 10 9 37 37 H 1.00899 * 110.99869 * 59.99971 * 14 12 11 38 38 H 1.00901 * 111.00564 * 183.95598 * 14 12 11 39 39 H 1.09003 * 110.36384 * 274.67376 * 18 17 15 40 40 H 1.09006 * 110.36395 * 36.88019 * 18 17 15 41 41 H 1.09000 * 110.99981 * 155.07990 * 19 18 17 42 42 H 1.08994 * 111.00709 * 278.89394 * 19 18 17 43 43 H 1.08997 * 110.85474 * 206.30011 * 20 19 18 44 44 H 1.09006 * 110.69775 * 82.95044 * 20 19 18 45 45 H 1.08996 * 109.46823 * 300.31249 * 22 21 17 46 46 H 1.08999 * 109.46802 * 60.31317 * 22 21 17 47 47 H 0.96704 * 113.99645 * 180.02562 * 23 22 21 48 48 H 1.07997 * 119.99846 * 359.97438 * 25 24 21 49 49 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 50 50 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 52 52 H 1.07999 * 120.00008 * 0.02562 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 1 3.1593 -6.0431 -0.8409 14 7 3.2369 -6.1420 1.2562 15 6 1.7253 -7.4516 -0.1239 16 8 1.5124 -8.1254 0.8618 17 7 1.2917 -7.8670 -1.3306 18 6 1.4815 -7.1506 -2.6050 19 6 1.3948 -8.2488 -3.6940 20 6 0.2944 -9.1803 -3.1140 21 6 0.5526 -9.1102 -1.5941 22 6 1.3856 -10.3147 -1.1515 23 8 0.6623 -11.5179 -1.4182 24 6 -0.7590 -9.0937 -0.8520 25 6 -1.6267 -10.1646 -0.9582 26 6 -2.8300 -10.1492 -0.2779 27 6 -3.1653 -9.0633 0.5090 28 6 -2.2998 -7.9903 0.6113 29 6 -1.0945 -8.0076 -0.0653 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.8720 -3.6044 0.8904 34 1 2.8720 -3.6044 -0.8895 35 1 0.8540 -5.0447 -0.8903 36 1 0.8534 -5.0451 0.8897 37 1 2.6241 -6.2398 2.0518 38 1 3.9446 -6.8611 1.2542 39 1 0.6918 -6.4127 -2.7466 40 1 2.4587 -6.6682 -2.6272 41 1 1.0861 -7.8270 -4.6505 42 1 2.3423 -8.7789 -3.7907 43 1 0.4171 -10.1999 -3.4791 44 1 -0.6984 -8.8002 -3.3548 45 1 2.3268 -10.3272 -1.7010 46 1 1.5895 -10.2426 -0.0832 47 1 1.1314 -12.3238 -1.1619 48 1 -1.3649 -11.0127 -1.5733 49 1 -3.5081 -10.9856 -0.3612 50 1 -4.1056 -9.0512 1.0402 51 1 -2.5637 -7.1400 1.2226 52 1 -0.4168 -7.1707 0.0171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342143218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:42 Heat of formation + Delta-G solvation = -84.251700 kcal Electronic energy + Delta-G solvation = -31943.340132 eV Core-core repulsion = 27906.265835 eV Total energy + Delta-G solvation = -4037.074297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22347 -39.98593 -38.78860 -37.28847 -37.13605 -35.26353 -33.23461 -33.05660 -32.73390 -31.63323 -29.88959 -29.44430 -26.94721 -26.29020 -24.83118 -23.86338 -23.43291 -22.66326 -21.75115 -21.29720 -19.91467 -18.64069 -18.44896 -18.18062 -17.72501 -17.12121 -16.87428 -16.64132 -16.47074 -16.17104 -15.76456 -15.53487 -15.50152 -15.07493 -14.80946 -14.61926 -14.31281 -14.22232 -14.15593 -13.85815 -13.70131 -13.56034 -13.47422 -13.11733 -13.08141 -12.85258 -12.51677 -12.47864 -12.40181 -12.27155 -12.05764 -12.01074 -11.86116 -11.56319 -11.44360 -11.39683 -11.25157 -10.99424 -10.82890 -10.51910 -9.89088 -9.78229 -9.73687 -9.57502 -8.17057 -6.27899 0.42811 0.50723 1.40675 1.42278 1.44498 1.52222 1.77858 2.43260 2.81999 3.15893 3.28546 3.34486 3.51261 3.55398 3.73289 3.81913 3.89160 4.03145 4.05282 4.10064 4.12566 4.16147 4.31173 4.38195 4.43504 4.47223 4.58694 4.61319 4.66895 4.73029 4.79407 4.85373 4.88190 4.95118 5.07969 5.09497 5.11600 5.12040 5.23298 5.26556 5.32438 5.35033 5.58100 5.59290 5.61390 5.73215 5.82266 5.92155 5.99254 6.11481 6.29409 6.38093 6.43584 6.80741 6.89616 7.01042 7.41232 8.94592 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002737 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.721812 B =10229.328373 C =10889.523347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.081 4.081 11 C -0.091 4.091 12 C 0.091 3.909 13 H 0.121 0.879 14 N -0.815 5.815 15 C 0.499 3.501 16 O -0.566 6.566 17 N -0.603 5.603 18 C 0.083 3.917 19 C -0.121 4.121 20 C -0.110 4.110 21 C 0.200 3.800 22 C 0.090 3.910 23 O -0.568 6.568 24 C -0.094 4.094 25 C -0.097 4.097 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.148 4.148 29 C -0.118 4.118 30 H 0.262 0.738 31 H -0.009 1.009 32 H -0.019 1.019 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.345 0.655 38 H 0.350 0.650 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.031 0.969 47 H 0.397 0.603 48 H 0.150 0.850 49 H 0.147 0.853 50 H 0.139 0.861 51 H 0.114 0.886 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -26.723 -8.533 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.118 4.118 11 C -0.130 4.130 12 C -0.025 4.025 13 H 0.139 0.861 14 N -0.344 5.344 15 C 0.287 3.713 16 O -0.445 6.445 17 N -0.338 5.338 18 C -0.038 4.038 19 C -0.159 4.159 20 C -0.148 4.148 21 C 0.115 3.885 22 C 0.011 3.989 23 O -0.376 6.376 24 C -0.095 4.095 25 C -0.115 4.115 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.166 4.166 29 C -0.136 4.136 30 H 0.071 0.929 31 H 0.009 0.991 32 H 0.000 1.000 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.248 0.752 48 H 0.168 0.832 49 H 0.165 0.835 50 H 0.156 0.844 51 H 0.132 0.868 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.315 -25.770 -8.352 27.121 hybrid contribution -0.076 0.037 1.010 1.014 sum 1.239 -25.733 -7.342 26.788 Atomic orbital electron populations 1.70103 1.07851 1.27702 1.51961 1.25996 0.95739 1.03384 0.94860 0.85524 0.78281 0.78136 0.79263 1.18812 1.20997 1.19370 1.21695 0.93588 0.92376 1.50124 0.92080 1.19025 0.94495 0.93520 0.94276 1.21260 0.97470 0.91799 1.01317 1.21420 0.96706 0.93672 1.01182 1.21601 0.95341 0.89474 0.96042 0.86134 1.59058 1.17481 1.54834 1.03032 1.22143 0.78815 0.88710 0.81650 1.90698 1.58403 1.58105 1.37262 1.48726 1.55264 1.21913 1.07853 1.22727 1.03219 0.95954 0.81941 1.22875 0.99655 0.95246 0.98110 1.22733 1.00002 1.02513 0.89504 1.19879 0.87852 0.84363 0.96439 1.22095 0.93481 0.84579 0.98777 1.86334 1.47976 1.16117 1.87135 1.20055 0.96272 0.94769 0.98407 1.21322 0.93068 0.97709 0.99426 1.21476 0.97388 0.98832 0.97264 1.21401 0.99933 0.93732 0.99405 1.21295 0.95080 0.99616 1.00604 1.21107 0.96540 0.98573 0.97380 0.92902 0.99085 1.00048 0.92475 0.92400 0.91539 0.94026 0.84165 0.83689 0.91304 0.88362 0.87408 0.88983 0.87672 0.90860 0.91822 0.95027 0.75219 0.83237 0.83524 0.84363 0.86768 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.08 -3.31 5.04 30.59 0.15 -3.15 16 11 C -0.09 -3.10 4.80 30.59 0.15 -2.95 16 12 C 0.09 2.44 2.57 44.17 0.11 2.55 16 13 H 0.12 2.73 6.91 -2.38 -0.02 2.71 16 14 N -0.82 -21.93 8.44 -171.81 -1.45 -23.38 16 15 C 0.50 13.59 4.68 87.66 0.41 14.00 16 16 O -0.57 -18.70 13.51 -3.03 -0.04 -18.74 16 17 N -0.60 -13.49 2.29 -769.21 -1.76 -15.25 16 18 C 0.08 1.42 6.24 86.85 0.54 1.97 16 19 C -0.12 -1.39 7.09 32.07 0.23 -1.16 16 20 C -0.11 -1.66 5.64 31.87 0.18 -1.48 16 21 C 0.20 4.21 0.55 3.21 0.00 4.21 16 22 C 0.09 1.70 5.88 71.98 0.42 2.12 16 23 O -0.57 -8.31 10.01 -148.98 -1.49 -9.80 16 24 C -0.09 -2.47 4.38 -19.86 -0.09 -2.56 16 25 C -0.10 -2.22 8.49 22.27 0.19 -2.03 16 26 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 27 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 28 C -0.15 -4.36 10.05 22.27 0.22 -4.14 16 29 C -0.12 -3.68 8.06 22.27 0.18 -3.50 16 30 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 31 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 33 H 0.06 2.41 7.75 -2.39 -0.02 2.39 16 34 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 2.19 7.41 -2.39 -0.02 2.17 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.34 10.07 8.58 -89.69 -0.77 9.30 16 38 H 0.35 7.90 9.06 -89.69 -0.81 7.09 16 39 H 0.07 1.33 7.87 -2.39 -0.02 1.31 16 40 H 0.10 1.41 6.92 -2.38 -0.02 1.39 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.10 1.32 7.31 -2.39 -0.02 1.31 16 44 H 0.07 1.23 7.84 -2.38 -0.02 1.21 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.03 0.80 6.70 -2.39 -0.02 0.79 16 47 H 0.40 2.53 9.12 -74.05 -0.68 1.85 16 48 H 0.15 2.91 6.15 -2.91 -0.02 2.90 16 49 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 50 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 51 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 52 H 0.10 3.36 5.14 -2.91 -0.01 3.34 16 Total: -1.00 -75.25 405.47 0.25 -75.00 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -1.31 Total: 33.93 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 4.00 Total: -30.80 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -2.93 Total: -96.42 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.53 Total: -28.54 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.25 0.25 -75.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342143218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.251 kcal (2) G-P(sol) polarization free energy of solvation -75.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds