Wall clock time and date at job start Sat Apr 11 2020 07:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00070 * 2 1 4 4 H 1.48510 * 109.47132 * 240.00472 * 3 2 1 5 5 H 1.48506 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47504 * 120.00305 * 3 2 1 7 7 C 1.37877 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46907 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46806 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47207 * 304.99702 * 12 11 10 14 14 N 1.46895 * 109.47433 * 65.00293 * 12 11 10 15 15 C 1.50701 * 109.47121 * 185.00137 * 12 11 10 16 16 O 1.21284 * 120.00424 * 260.00289 * 15 12 11 17 17 N 1.34786 * 120.00166 * 79.99742 * 15 12 11 18 18 C 1.46494 * 120.00193 * 180.02562 * 17 15 12 19 19 H 1.09007 * 112.90520 * 336.25029 * 18 17 15 20 20 C 1.53778 * 113.61889 * 107.50029 * 18 17 15 21 21 C 1.53779 * 87.08101 * 139.97961 * 20 18 17 22 22 C 1.52999 * 113.61161 * 89.11806 * 21 20 18 23 23 O 1.42903 * 109.47256 * 82.50554 * 22 21 20 24 24 C 1.50696 * 113.69191 * 220.00807 * 21 20 18 25 25 C 1.38246 * 119.99891 * 98.79373 * 24 21 20 26 26 C 1.38236 * 119.99608 * 179.81418 * 25 24 21 27 27 C 1.38235 * 120.00266 * 0.41650 * 26 25 24 28 28 C 1.38238 * 119.99905 * 359.81326 * 27 26 25 29 29 C 1.38231 * 120.00260 * 279.07071 * 24 21 20 30 30 C 1.53782 * 87.08480 * 334.57082 * 21 20 18 31 31 H 0.96996 * 120.00040 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46747 * 60.00694 * 9 7 2 33 33 H 1.09005 * 109.47367 * 300.00286 * 9 7 2 34 34 H 1.08999 * 109.46911 * 60.00540 * 10 9 7 35 35 H 1.08992 * 109.47302 * 300.00403 * 10 9 7 36 36 H 1.08997 * 109.47468 * 60.00486 * 11 10 9 37 37 H 1.09005 * 109.47458 * 299.99908 * 11 10 9 38 38 H 1.00903 * 110.99862 * 296.04390 * 14 12 11 39 39 H 1.00900 * 111.00504 * 59.99802 * 14 12 11 40 40 H 0.97000 * 119.99398 * 359.97438 * 17 15 12 41 41 H 1.08997 * 113.60938 * 25.43192 * 20 18 17 42 42 H 1.09000 * 113.61746 * 254.52958 * 20 18 17 43 43 H 1.08997 * 109.47286 * 322.50114 * 22 21 20 44 44 H 1.09008 * 109.47201 * 202.49894 * 22 21 20 45 45 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 46 46 H 1.07994 * 119.99648 * 359.97438 * 25 24 21 47 47 H 1.08001 * 119.99498 * 180.21474 * 26 25 24 48 48 H 1.07996 * 120.00132 * 179.79581 * 27 26 25 49 49 H 1.08001 * 119.99392 * 179.97438 * 28 27 26 50 50 H 1.08002 * 119.99975 * 359.97438 * 29 24 21 51 51 H 1.09001 * 113.61404 * 139.97934 * 30 21 20 52 52 H 1.09002 * 113.61131 * 270.80597 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 1 3.1592 -6.0431 -0.8418 14 7 3.2367 -6.1420 1.2552 15 6 1.7253 -7.4516 -0.1250 16 8 1.5122 -8.1254 0.8606 17 7 1.2918 -7.8669 -1.3318 18 6 0.5630 -9.1319 -1.4528 19 1 0.7783 -9.8251 -0.6395 20 6 -0.9393 -8.9535 -1.7285 21 6 -0.8218 -10.1399 -2.6997 22 6 -1.0510 -11.4997 -2.0368 23 8 -2.4542 -11.7537 -1.9434 24 6 -1.6174 -9.9656 -3.9676 25 6 -0.9915 -9.5352 -5.1227 26 6 -1.7206 -9.3790 -6.2867 27 6 -3.0772 -9.6448 -6.2936 28 6 -3.7039 -10.0706 -5.1374 29 6 -2.9741 -10.2305 -3.9743 30 6 0.6633 -9.7697 -2.8485 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8904 33 1 0.6247 -2.5571 0.8897 34 1 2.8719 -3.6044 0.8895 35 1 2.8720 -3.6043 -0.8904 36 1 0.8540 -5.0446 -0.8914 37 1 0.8533 -5.0451 0.8886 38 1 3.7984 -5.3073 1.3320 39 1 2.6239 -6.2399 2.0508 40 1 1.4619 -7.3278 -2.1200 41 1 -1.1844 -8.0110 -2.2181 42 1 -1.5695 -9.1584 -0.8630 43 1 -0.6153 -11.4948 -1.0377 44 1 -0.5797 -12.2796 -2.6349 45 1 -2.6741 -12.6006 -1.5317 46 1 0.0675 -9.3236 -5.1162 47 1 -1.2310 -9.0461 -7.1900 48 1 -3.6474 -9.5196 -7.2022 49 1 -4.7638 -10.2779 -5.1427 50 1 -3.4639 -10.5628 -3.0709 51 1 1.3269 -10.6336 -2.8872 52 1 0.8565 -9.0513 -3.6453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355270461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:58:56 Heat of formation + Delta-G solvation = -80.098870 kcal Electronic energy + Delta-G solvation = -29922.793436 eV Core-core repulsion = 25885.899219 eV Total energy + Delta-G solvation = -4036.894217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86826 -40.59311 -38.95414 -37.45302 -37.11050 -35.26255 -34.67242 -32.98758 -31.72882 -31.65897 -29.49676 -28.35599 -26.94429 -26.86588 -24.87663 -24.05819 -23.18140 -22.24624 -21.82446 -21.26069 -19.66528 -18.65726 -18.47471 -18.36295 -17.78952 -17.05943 -16.54095 -16.39263 -16.16302 -16.11318 -15.97550 -15.69752 -15.55489 -15.40584 -14.94364 -14.63822 -14.43429 -14.24314 -14.10292 -13.69258 -13.63261 -13.53123 -13.44117 -13.30702 -12.99031 -12.89389 -12.55296 -12.45743 -12.41337 -12.30241 -12.20140 -11.80613 -11.51169 -11.48436 -11.42329 -11.31519 -11.26886 -10.76472 -10.70714 -10.55929 -10.03775 -9.71597 -9.66612 -9.48225 -8.20607 -6.32125 0.51416 0.61081 1.40065 1.42772 1.50609 1.59494 2.15849 2.40584 2.87757 3.12760 3.15130 3.44843 3.57314 3.66696 3.74387 3.80270 3.91073 4.00306 4.03995 4.10313 4.19865 4.25888 4.37276 4.43303 4.43811 4.54436 4.57484 4.63437 4.70505 4.76475 4.78207 4.82902 4.87211 5.00345 5.01533 5.03677 5.12380 5.18518 5.23433 5.25646 5.33652 5.51435 5.56157 5.67660 5.72542 5.75669 5.84100 5.84668 6.06375 6.22473 6.23181 6.49043 6.56474 6.85908 6.93129 7.25236 7.37730 8.90916 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.002116 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.898222 B =13230.737185 C =14951.430992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.023 3.977 10 C -0.094 4.094 11 C -0.134 4.134 12 C 0.084 3.916 13 H 0.124 0.876 14 N -0.832 5.832 15 C 0.524 3.476 16 O -0.573 6.573 17 N -0.708 5.708 18 C 0.122 3.878 19 H 0.103 0.897 20 C -0.136 4.136 21 C -0.036 4.036 22 C 0.101 3.899 23 O -0.578 6.578 24 C -0.074 4.074 25 C -0.130 4.130 26 C -0.134 4.134 27 C -0.135 4.135 28 C -0.141 4.141 29 C -0.112 4.112 30 C -0.120 4.120 31 H 0.263 0.737 32 H -0.009 1.009 33 H -0.017 1.017 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.356 0.644 39 H 0.344 0.656 40 H 0.415 0.585 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.393 0.607 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.129 0.871 50 H 0.138 0.862 51 H 0.098 0.902 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 -26.904 -11.794 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.174 4.174 12 C -0.031 4.031 13 H 0.141 0.859 14 N -0.364 5.364 15 C 0.311 3.689 16 O -0.452 6.452 17 N -0.360 5.360 18 C 0.017 3.983 19 H 0.121 0.879 20 C -0.175 4.175 21 C -0.037 4.037 22 C 0.024 3.976 23 O -0.388 6.388 24 C -0.074 4.074 25 C -0.148 4.148 26 C -0.152 4.152 27 C -0.153 4.153 28 C -0.159 4.159 29 C -0.129 4.129 30 C -0.158 4.158 31 H 0.071 0.929 32 H 0.009 0.991 33 H 0.001 0.999 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.172 0.828 39 H 0.157 0.843 40 H 0.251 0.749 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.243 0.757 46 H 0.158 0.842 47 H 0.155 0.845 48 H 0.151 0.849 49 H 0.147 0.853 50 H 0.156 0.844 51 H 0.116 0.884 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.970 -27.366 -11.648 29.757 hybrid contribution -0.804 1.724 0.386 1.941 sum -1.774 -25.641 -11.262 28.062 Atomic orbital electron populations 1.70100 1.07918 1.27794 1.51799 1.26014 0.95730 1.03504 0.94823 0.85513 0.78251 0.78077 0.79297 1.18891 1.21161 1.19169 1.21703 0.93685 0.92277 1.50321 0.91763 1.19004 0.94500 0.93401 0.94478 1.21428 0.97899 0.92504 1.01342 1.22222 0.98364 0.94651 1.02166 1.21402 0.95118 0.90158 0.96468 0.85859 1.58719 1.28116 1.46251 1.03284 1.20827 0.77952 0.86980 0.83159 1.90635 1.58233 1.57813 1.38470 1.45878 1.57093 1.23500 1.09487 1.22500 0.90896 0.85948 0.98961 0.87863 1.23504 0.96855 0.98369 0.98778 1.20538 0.95518 0.94721 0.92928 1.21908 0.82525 0.94221 0.98991 1.86446 1.23151 1.44466 1.84692 1.19581 0.93983 0.99669 0.94150 1.21416 1.01026 0.99915 0.92403 1.21406 0.94555 1.00447 0.98785 1.21441 0.95417 0.99665 0.98749 1.21444 1.00569 1.00499 0.93348 1.21567 0.94232 0.98180 0.98944 1.23492 0.94367 1.02014 0.95923 0.92863 0.99070 0.99884 0.92597 0.91642 0.91170 0.93643 0.82826 0.84253 0.74852 0.90191 0.92121 0.92588 0.91775 0.75681 0.84157 0.84508 0.84854 0.85346 0.84449 0.88351 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.50 4.92 30.59 0.15 -3.35 16 11 C -0.13 -4.19 4.84 30.59 0.15 -4.04 16 12 C 0.08 2.16 3.21 44.17 0.14 2.30 16 13 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 14 N -0.83 -22.30 8.94 -171.81 -1.54 -23.83 16 15 C 0.52 14.21 7.08 87.66 0.62 14.84 16 16 O -0.57 -19.81 15.85 -3.04 -0.05 -19.86 16 17 N -0.71 -14.10 5.35 -440.02 -2.36 -16.45 16 18 C 0.12 2.22 3.89 45.52 0.18 2.39 16 19 H 0.10 2.18 6.98 -2.38 -0.02 2.16 16 20 C -0.14 -2.69 6.99 31.12 0.22 -2.47 16 21 C -0.04 -0.56 1.05 -52.40 -0.06 -0.62 16 22 C 0.10 1.31 6.38 71.98 0.46 1.77 16 23 O -0.58 -7.91 10.11 -148.98 -1.51 -9.41 16 24 C -0.07 -1.32 5.02 -19.87 -0.10 -1.42 16 25 C -0.13 -2.09 9.19 22.27 0.20 -1.88 16 26 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 27 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 28 C -0.14 -2.54 10.05 22.27 0.22 -2.32 16 29 C -0.11 -2.20 8.81 22.27 0.20 -2.00 16 30 C -0.12 -1.46 6.42 31.12 0.20 -1.26 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 34 H 0.06 2.00 6.87 -2.39 -0.02 1.98 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.36 8.80 7.55 -89.69 -0.68 8.12 16 39 H 0.34 9.93 8.58 -89.69 -0.77 9.16 16 40 H 0.41 6.19 8.73 -92.71 -0.81 5.38 16 41 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 42 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 43 H 0.06 0.70 7.34 -2.39 -0.02 0.68 16 44 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.39 2.05 9.12 -74.06 -0.68 1.37 16 46 H 0.14 1.63 5.79 -2.91 -0.02 1.61 16 47 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 48 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 49 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 50 H 0.14 2.81 5.56 -2.91 -0.02 2.79 16 51 H 0.10 0.89 8.10 -2.39 -0.02 0.87 16 52 H 0.11 1.10 5.97 -2.39 -0.01 1.09 16 Total: -1.00 -74.76 415.88 -1.23 -75.98 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -1.97 Total: 34.96 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 3.87 Total: -30.33 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -3.61 Total: -97.15 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.55 Total: -29.27 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -74.76 -1.23 -75.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355270461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.117 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds